NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F089461

Metagenome / Metatranscriptome Family F089461

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089461
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 44 residues
Representative Sequence SWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW
Number of Associated Samples 95
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.25 %
% of genes from short scaffolds (< 2000 bps) 90.83 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.413 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(22.936 % of family members)
Environment Ontology (ENVO) Unclassified
(30.275 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.872 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56
1JGI25405J52794_100949612
2Ga0062592_1009082601
3Ga0066821_10104682
4Ga0066869_101042902
5Ga0066388_1034477172
6Ga0066388_1077327802
7Ga0070674_1021038902
8Ga0008090_101757212
9Ga0008090_102087701
10Ga0070705_1002548172
11Ga0066905_1022746271
12Ga0066903_1071176752
13Ga0066903_1074969422
14Ga0066903_1091205112
15Ga0068858_1016350761
16Ga0075363_1009976991
17Ga0070715_103661242
18Ga0070712_1004906061
19Ga0074060_120029912
20Ga0075421_1014602372
21Ga0075436_1004076131
22Ga0099827_102037701
23Ga0126384_108720913
24Ga0126384_113738831
25Ga0126382_114822922
26Ga0126372_103709402
27Ga0126377_111503162
28Ga0126377_111908371
29Ga0126377_114960662
30Ga0126379_104164713
31Ga0126381_1005808013
32Ga0126381_1035618002
33Ga0126381_1044261551
34Ga0126381_1046775052
35Ga0126383_131537412
36Ga0134121_102565612
37Ga0137377_103283931
38Ga0137366_100770383
39Ga0137366_103203782
40Ga0137395_112366261
41Ga0164301_112383251
42Ga0126369_105892281
43Ga0075304_10352682
44Ga0173483_101553231
45Ga0134085_105932471
46Ga0132258_118121733
47Ga0182036_115920912
48Ga0182036_117467961
49Ga0182033_119210902
50Ga0182038_121913531
51Ga0184619_105218291
52Ga0184640_103714791
53Ga0184628_100484251
54Ga0190271_112413541
55Ga0210381_103041051
56Ga0210382_101387432
57Ga0210406_112551301
58Ga0126371_121776172
59Ga0222622_102533721
60Ga0207681_101363513
61Ga0207669_109767601
62Ga0207651_113224932
63Ga0207641_100056581
64Ga0207683_101152591
65Ga0209474_104128951
66Ga0179587_109902862
67Ga0209799_10262622
68Ga0209689_10052588
69Ga0209481_104708652
70Ga0307276_100787521
71Ga0307291_10665251
72Ga0307317_100276304
73Ga0307319_100544651
74Ga0307299_100421511
75Ga0307310_105030481
76Ga0170824_1158190621
77Ga0170818_1008905611
78Ga0318534_104258261
79Ga0318534_107169601
80Ga0318571_103561271
81Ga0318528_100329151
82Ga0318555_104965441
83Ga0318560_105121601
84Ga0306917_101351633
85Ga0307469_117727302
86Ga0318500_100454613
87Ga0306918_110511951
88Ga0318554_105178422
89Ga0318526_100436761
90Ga0318547_100028716
91Ga0318529_101510201
92Ga0318548_104363371
93Ga0318567_108991951
94Ga0306919_104811801
95Ga0306919_109724171
96Ga0306925_107710931
97Ga0318522_104043312
98Ga0318520_110923992
99Ga0310910_108191752
100Ga0310909_115161982
101Ga0318532_103037411
102Ga0318506_102776292
103Ga0318575_101409621
104Ga0318504_100624223
105Ga0318525_101255431
106Ga0318518_102574252
107Ga0318519_100802641
108Ga0326726_123265191
109Ga0247830_111087561
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 0.00%    β-sheet: 23.94%    Coil/Unstructured: 76.06%
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510152025303540SWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWWSequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
95.4%4.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Groundwater Sediment
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Natural And Restored Wetlands
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Peat Soil
Arabidopsis Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Populus Endosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Tropical Rainforest Soil
8.3%5.5%13.8%22.9%8.3%6.4%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25405J52794_1009496123300003911Tabebuia Heterophylla RhizosphereTPACFSWAAGERIRLIAGDWNGRCIGAIFYNYARRTRCETWCGW*
Ga0062592_10090826013300004480SoilWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMSCGGSRW*
Ga0066821_101046823300005147SoilFVGRTPACWSWAAGEPIRLLAGDWNGRCDYAVFYNFYRRSTCEMSCGGSRW*
Ga0066869_1010429023300005165SoilTPACFSWAAGERIRLISGDWNGRCVAALFYNFYRRNTCEVWCGGGGWW*
Ga0066388_10344771723300005332Tropical Forest SoilGWAPGERIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGGWW*
Ga0066388_10773278023300005332Tropical Forest SoilFSWAAGERIRLIAGDWNGRCVAARFYNFYRRDTCDVWCGSGGWW*
Ga0070674_10210389023300005356Miscanthus RhizosphereRTPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW*
Ga0008090_1017572123300005363Tropical Rainforest SoilAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0008090_1020877013300005363Tropical Rainforest SoilAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW*
Ga0070705_10025481723300005440Corn, Switchgrass And Miscanthus RhizosphereCWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW*
Ga0066905_10227462713300005713Tropical Forest SoilACFSWAAGERIRLIAGDWNGRCIGAIFYNYARRNRCETWCGW*
Ga0066903_10711767523300005764Tropical Forest SoilAGERIRLLAGDWNGRCVAARFYNFYRRNTCDMWCGGGGW*
Ga0066903_10749694223300005764Tropical Forest SoilSGKTPACLSWAAGEQITLVAGDWHGRCVDAVFYNYPRRSTCEVSCGWGRY*
Ga0066903_10912051123300005764Tropical Forest SoilSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0068858_10163507613300005842Switchgrass RhizosphereCWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW*
Ga0075363_10099769913300006048Populus EndosphereTPACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCQMLCGGSRW*
Ga0070715_1036612423300006163Corn, Switchgrass And Miscanthus RhizosphereFGWVAGERITLVAGDWNARCVVAVFYNFYRRNTCEMWCGGSGWW*
Ga0070712_10049060613300006175Corn, Switchgrass And Miscanthus RhizosphereCFGWVAGERITLVAGDWNARCVVAVFYNFYRRNTCEVWCGGGWW*
Ga0074060_1200299123300006604SoilWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEVWCGGGGWW*
Ga0075421_10146023723300006845Populus RhizosphereCLHWAAGERIRLIAGDWNGRCVGAIFYNYARRNRCEMWCGW*
Ga0075436_10040761313300006914Populus RhizosphereIRLIAGDWNGRCVAARFYNFYRRNTCEVSCGGGGWW*
Ga0099827_1020377013300009090Vadose Zone SoilRRFTAKTPACMRWAAGERIRLIAGDWNGRCVDAVFYNYFWRGTCEMWCGW*
Ga0126384_1087209133300010046Tropical Forest SoilGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW*
Ga0126384_1137388313300010046Tropical Forest SoilRIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGWWW*
Ga0126382_1148229223300010047Tropical Forest SoilFTGWAPACFRWVAGERIRLIAGDWNGRCIGAIFYNYARRNRCEMWCGW*
Ga0126372_1037094023300010360Tropical Forest SoilRIRLIAGDWNGRCVAARFYNFYRRNTCDVSCGSGGWWW*
Ga0126377_1115031623300010362Tropical Forest SoilRITLIAGDWHGRCDAAVFYNYARHNTCEVSCGGGWW*
Ga0126377_1119083713300010362Tropical Forest SoilMRWAAGEPIRLIAGDWNGRCVDAIFYNYFWRSTCEMSCGRSWWY*
Ga0126377_1149606623300010362Tropical Forest SoilARTPACLGWAPGERIRLIAGDWNGRCVTAVFYNFYRRSTCEMWCGGGWW*
Ga0126379_1041647133300010366Tropical Forest SoilIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGWWW*
Ga0126381_10058080133300010376Tropical Forest SoilTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW*
Ga0126381_10356180023300010376Tropical Forest SoilGWAAGERIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGWWW*
Ga0126381_10442615513300010376Tropical Forest SoilTPACFSWAAGERIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGSWWW*
Ga0126381_10467750523300010376Tropical Forest SoilFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0126383_1315374123300010398Tropical Forest SoilFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW*
Ga0134121_1025656123300010401Terrestrial SoilTPACWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW*
Ga0137377_1032839313300012211Vadose Zone SoilCFAWAAGERIRLLAGDWNGRCVVALFYNFYRRNTCEMWCGGGWW*
Ga0137366_1007703833300012354Vadose Zone SoilGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGCWW*
Ga0137366_1032037823300012354Vadose Zone SoilCFGWAAGERIRLLAGDWNARCAVAVFYNFYRRNTCEMWCGSGWWW*
Ga0137395_1123662613300012917Vadose Zone SoilERIRLLAGDWNGRCVVALFYNFYRRNTCEMWCGGGWW*
Ga0164301_1123832513300012960SoilRITLVAGDWNARCAVAVFYNFYRRNTCEMWCGGGGWW*
Ga0126369_1058922813300012971Tropical Forest SoilARTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0075304_103526823300014307Natural And Restored WetlandsGEQIKLIEGDWNGRCVEAVFYNVWRRSTCVTVCEGNGWRWW*
Ga0173483_1015532313300015077SoilERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW*
Ga0134085_1059324713300015359Grasslands SoilRSPSCFGWAAGERIRLLAGDWNARCAVAVFYNFYRRNTCEMLCGSGWWW*
Ga0132258_1181217333300015371Arabidopsis RhizosphereWSWAAGERIKLLAGDWNARCDYAAFYNFYRRSTCEMWCGGSRW*
Ga0182036_1159209123300016270SoilTPACFSWAAGERIRLIAGDWNGRCVAALFYNFYRRNTCEVWCGGGGWW
Ga0182036_1174679613300016270SoilARTPACFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0182033_1192109023300016319SoilSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0182038_1219135313300016445SoilACFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDMWCGGGGWW
Ga0184619_1052182913300018061Groundwater SedimentTGKSRACFNWAAGERIKLIAGDWNARCTEAVFYNFYRRSTCEMWCRPW
Ga0184640_1037147913300018074Groundwater SedimentFVGRSPACWSWAAGERIKLLAGNWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0184628_1004842513300018083Groundwater SedimentSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW
Ga0190271_1124135413300018481SoilACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW
Ga0210381_1030410513300021078Groundwater SedimentACWSWAAGEAIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0210382_1013874323300021080Groundwater SedimentRIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0210406_1125513013300021168SoilERITLVAGDWNARCVVAVFYNFYRRNTCEMWCGGGGWW
Ga0126371_1217761723300021560Tropical Forest SoilSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW
Ga0222622_1025337213300022756Groundwater SedimentGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0207681_1013635133300025923Switchgrass RhizosphereRTPACWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMLCGGSRW
Ga0207669_1097676013300025937Miscanthus RhizosphereTPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0207651_1132249323300025960Switchgrass RhizosphereACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCQMLCGGSRW
Ga0207641_1000565813300026088Switchgrass RhizosphereAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW
Ga0207683_1011525913300026121Miscanthus RhizosphereTPACWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW
Ga0209474_1041289513300026550SoilTPACFSWAAGERIALIAGDWHGRCIDAVFYNFARRSTCETWCH
Ga0179587_1099028623300026557Vadose Zone SoilARTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEVWCGGGGWW
Ga0209799_102626223300027654Tropical Forest SoilRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0209689_100525883300027748SoilRIRLIAGDWNGRCVAALFYNFYRRNTCEVWCGGGGWW
Ga0209481_1047086523300027880Populus RhizosphereGMSPACFNWVAGERITLIAGDWNARCVGAVFYNFARRNRCEMLCGWRW
Ga0307276_1007875213300028705SoilTPACFSWVAGERITLVAGDWNAHCVVAVFYNFYRRNTCEMWCGGGGWW
Ga0307291_106652513300028707SoilAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0307317_1002763043300028720SoilRSPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0307319_1005446513300028722SoilAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW
Ga0307299_1004215113300028793SoilKSRACFNWAAGERIKLIAGDWNARCTEAVFYNFYRRSTCEMWCRPW
Ga0307310_1050304813300028824SoilSWAAGERIKLLAGNWNARCDYAVFYNLYRRSTCEMWCGGSRW
Ga0170824_11581906213300031231Forest SoilPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMSCGGSRW
Ga0170818_10089056113300031474Forest SoilPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0318534_1042582613300031544SoilIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318534_1071696013300031544SoilFTALTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318571_1035612713300031549SoilLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318528_1003291513300031561SoilFTARTPACFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0318555_1049654413300031640SoilRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318560_1051216013300031682SoilRTPACFSWAAGERIGLIAGDWHARCVDAVFYNFSRRSTCETWCR
Ga0306917_1013516333300031719SoilERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0307469_1177273023300031720Hardwood Forest SoilTGWAPACFRWVAGERIRLIAGDWNGRCIGAIFYNYARRNRCEMWCGW
Ga0318500_1004546133300031724SoilPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0306918_1105119513300031744SoilERIRLIAGDWNGRCVDARFYNFYRRNTCDVWCGSGGWWW
Ga0318554_1051784223300031765SoilCISWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318526_1004367613300031769SoilLIGGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318547_1000287163300031781SoilTPACFSWAAGERIRLLAGDWNGRCVTAVFYNFYRRSTCEMWCGGSWWW
Ga0318529_1015102013300031792SoilRLSAGDWNGRCVAARFYNFYRRDTCDVWCGSGGWW
Ga0318548_1043633713300031793SoilAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318567_1089919513300031821SoilSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0306919_1048118013300031879SoilIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0306919_1097241713300031879SoilRIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0306925_1077109313300031890SoilAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0318522_1040433123300031894SoilTRFTALTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318520_1109239923300031897SoilRIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0310910_1081917523300031946SoilFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0310909_1151619823300031947SoilATAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0318532_1030374113300032051SoilLSAGDWNGRCVAARFYNFYRRYTCDVWCGSGGWWW
Ga0318506_1027762923300032052SoilRTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRDTCDVWCGSGGWW
Ga0318575_1014096213300032055SoilTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318504_1006242233300032063SoilHQRRPLHGATAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318525_1012554313300032089SoilTALTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318518_1025742523300032090SoilRIRLIVGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318519_1008026413300033290SoilFTARTPACFSWAAGERIRLLAGDWNGRCVTAVFYNFYRRSTCEMWCGGSWWW
Ga0326726_1232651913300033433Peat SoilAAGERIRLVAGDWNGQCVDAVFYNVWRRSTCEMWCRAWW
Ga0247830_1110875613300033551SoilFVGQTPACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW


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