Basic Information | |
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Family ID | F089371 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 109 |
Average Sequence Length | 42 residues |
Representative Sequence | FLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIESE |
Number of Associated Samples | 100 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 5.50 % |
% of genes near scaffold ends (potentially truncated) | 93.58 % |
% of genes from short scaffolds (< 2000 bps) | 90.83 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.16 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (97.248 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.349 % of family members) |
Environment Ontology (ENVO) | Unclassified (37.615 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (40.367 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.16 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Watersheds Groundwater Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Grasslands Soil Soil Soil Grasslands Soil Grass Soil Soil Forest Soil Soil Hardwood Forest Soil Prmafrost Soil Tropical Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Tabebuia Heterophylla Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
L01_03504680 | 2170459006 | Grass Soil | FLSTRTDPRQEVELEASRESDSKITQVEISLPLPKPNIESE |
L01_04616480 | 2170459006 | Grass Soil | DPRQEVELEASREPDSKITQVEISLPLPKPNIESE |
F47_01432450 | 2170459009 | Grass Soil | TCTDPRQEVELEASREPDSKITQVEISSPLPEPNIDSE |
JGI11643J12802_109893591 | 3300000890 | Soil | DPRQEVELEASREPDSKITHVEISSPLPKPDIESE* |
JGI11643J12802_112385104 | 3300000890 | Soil | KITRILFLSTRTDPRQEVELEASREPDSKVTQVEISCPLPKPEIASE* |
JGI10220J13317_100260391 | 3300001139 | Soil | DPRLEVELEASREPDSNITQVEISSPLPKPDIENE* |
JGI25404J52841_100058095 | 3300003659 | Tabebuia Heterophylla Rhizosphere | FLSTRTDPRQEVELEASREPDGKITHVEISSPLPKPNIDDE* |
Ga0062593_1012356752 | 3300004114 | Soil | SSNGNLTTIMFLSTRTDPVQKVELDARRAPGEKISRIKISSPLFKPDETSE* |
Ga0063356_1043586221 | 3300004463 | Arabidopsis Thaliana Rhizosphere | LSTRTDPRQEVELEASREPDSKITHVEISSPLPKPDIVSE* |
Ga0062595_1001291222 | 3300004479 | Soil | LSTRTDPRQEVEMEAKREAGGKITEVNISSPLPKPEAASD* |
Ga0066814_101126171 | 3300005162 | Soil | KITRILFLSTRTDPRQEVELEASREPDSKITRIEISSPLPKPDIGSE* |
Ga0066684_109395241 | 3300005179 | Soil | FLSTRTDPRQEVELEASREPDGKITQVEISSPLPKPEIASE* |
Ga0065715_104460611 | 3300005293 | Miscanthus Rhizosphere | ILFLSTRTDPRQEVELEASREPDSKVTQIEISSPLPKPDIGSE* |
Ga0068869_1019562441 | 3300005334 | Miscanthus Rhizosphere | LFLSTRTDPRQEVELEASREPESKVTQVEISSPLPKPGIGSE* |
Ga0070682_1005421493 | 3300005337 | Corn Rhizosphere | TRILFLSTRTDPRQEVELEASREPGGKVTRIEIASPLPKPDIGSE* |
Ga0070709_102749451 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | STRTDPRQEVELEASREPDSKVTQVEISSPLPKPDIGSE* |
Ga0070711_1008397271 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | TRILFLSTRTDPRQEVELEASREPESKVTQVEISSPLPKPEIGSE* |
Ga0070693_1006219532 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | LSTRTDPRQEVELEASREPGGKVTRIEIASPLPKPDIGSE* |
Ga0066698_110140911 | 3300005558 | Soil | LSTRTDPRQEVELEASREPDNKITQVEISSPLPKPDIESE* |
Ga0066703_101610003 | 3300005568 | Soil | NGKLTTIMFLSTRTDPVQEAKLEASREPGGKITQVEISSPLPKPDIGSE* |
Ga0066705_100518444 | 3300005569 | Soil | KITRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPVIESQ* |
Ga0066691_101870373 | 3300005586 | Soil | FLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPVIESQ* |
Ga0066903_1067766461 | 3300005764 | Tropical Forest Soil | STRTDPRQEVELEASREPDSKVTQVQISSPLPKPELGSE* |
Ga0080027_104509742 | 3300005993 | Prmafrost Soil | VRNNISSNGNLTTIMFLSTRTDPVQKVEMDARRAPGEKISRVEISSPLPKPG |
Ga0066652_1003807751 | 3300006046 | Soil | DPRQEVELEASREPDSKITKVEISSPLPKPDIESD* |
Ga0075018_105204582 | 3300006172 | Watersheds | STRTDPRQEVELEASREPDSKITQVEISSPLPKPDIESE* |
Ga0070712_1002801391 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | STRTDPRQEVELEASREPDGKITQVEISSPLPKPNIESE* |
Ga0070765_1021177052 | 3300006176 | Soil | STRTDPRQEVELEASREPDGKITQVEISSPLPKPDIEGE* |
Ga0099795_103409451 | 3300007788 | Vadose Zone Soil | NPVEKVELEASSEPNSKVTQVEISSPLPKPDIESE* |
Ga0099829_107723202 | 3300009038 | Vadose Zone Soil | LFLSTRTDPRQEVELEASREADNKITQVEISSPLPKPDIESE* |
Ga0066709_1013553901 | 3300009137 | Grasslands Soil | MNVNGKNTRILFLSTRTNPREKVELEASREADSKVTHAEISSPL |
Ga0105249_120657441 | 3300009553 | Switchgrass Rhizosphere | RTDPRQEVELEASREPDGKITQIEISSPLPKPNIESE* |
Ga0126374_116289351 | 3300009792 | Tropical Forest Soil | PRQEVELEASREPDSKITQVEISSPLPKPVVASE* |
Ga0126373_124419271 | 3300010048 | Tropical Forest Soil | TRILFLSTRNDPREEVELEASREPGSKVTQVQISSPLPKPEIGSE* |
Ga0134070_103732631 | 3300010301 | Grasslands Soil | KITRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPNIDSE* |
Ga0134109_104065041 | 3300010320 | Grasslands Soil | LFLSTRTDPRQEVELEASRDPDSKVTQVEISSPLPKPEIGSE* |
Ga0134084_102693691 | 3300010322 | Grasslands Soil | LFLSTRTDPREEVELEASREPNGKITQVEISSALPKPDFGSE* |
Ga0126370_121478091 | 3300010358 | Tropical Forest Soil | TNPGQEVELEASREKDSKVTQVAISSPPPKPDIGSE* |
Ga0126370_123162931 | 3300010358 | Tropical Forest Soil | RILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDVASE* |
Ga0126377_104110951 | 3300010362 | Tropical Forest Soil | DPRQEVELEASREPDAKITQVEISSPLPKPDIDTE* |
Ga0105246_102715033 | 3300011119 | Miscanthus Rhizosphere | LSTRTDPRQEVELEASREPDSKVTQVQISSPLPKPEIGTE* |
Ga0137391_108713532 | 3300011270 | Vadose Zone Soil | ILFLSTRTDPKQEVELEASREPGSKVTQVEISSPLPKPEIGSE* |
Ga0137388_110755752 | 3300012189 | Vadose Zone Soil | STRSDPMQEVELEASREPDGKITQVEISSPLPKPDIESE* |
Ga0137363_1000405611 | 3300012202 | Vadose Zone Soil | MFLSTRTDPLQEVKLEASREPGGKITQIEISFPLPKPDVQGE* |
Ga0137363_104397791 | 3300012202 | Vadose Zone Soil | TRTDPRQEVELEASREPNSKVTQIQISSPLPKPEVGSE* |
Ga0137363_106107971 | 3300012202 | Vadose Zone Soil | TDPRQEVELAASREQDSKITQVEISSPLPKPDIESE* |
Ga0137399_115923421 | 3300012203 | Vadose Zone Soil | KITRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIGSE* |
Ga0137372_109866272 | 3300012350 | Vadose Zone Soil | STRTDPRLEVELEASREPDSNITQVEISSPLPKPDIESE* |
Ga0137367_110804761 | 3300012353 | Vadose Zone Soil | FLSTRTDPRQEVELEASREPDNKVTQIQISSPLPKPEIGSE* |
Ga0137366_109455212 | 3300012354 | Vadose Zone Soil | FLSTRTDPRQEVELEASREPNNKVTQIQISSPLPKPEVGSE* |
Ga0137371_112024942 | 3300012356 | Vadose Zone Soil | FLSTLTDLRQEVELEASREPDSKITQIEISSPLPKPDVESE* |
Ga0137368_104665211 | 3300012358 | Vadose Zone Soil | ITRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIESE* |
Ga0137359_100889531 | 3300012923 | Vadose Zone Soil | NGKLITITSLSTRSDPVQEVKLEASREADGKVTQVEISSPLPKPDIGSE* |
Ga0137359_114216611 | 3300012923 | Vadose Zone Soil | PRQEVELEASREPDSKITQIEISSRLPKPDIESE* |
Ga0137419_117493242 | 3300012925 | Vadose Zone Soil | TQTNPVEKVELEASREPNSKVTQVEISSPLPKPDIESE* |
Ga0137404_107882211 | 3300012929 | Vadose Zone Soil | TDPRQEVELEASREPDGKITQVEISSPLPKPNIESE* |
Ga0164300_103683822 | 3300012951 | Soil | NGKVTRILFLSTRTDPRQEVELEASREPESKVTQVEISSPLPKPEIGSE* |
Ga0164302_100057291 | 3300012961 | Soil | GKLMTVTSLSTRSDPVQEVKLEASREADGKITQVEISSPLPKPNIETE* |
Ga0164306_115972831 | 3300012988 | Soil | NGKITRILFLSTRTDPRQEVELEASREPDSKITQVQISSPLPKPDIESE* |
Ga0134081_100488713 | 3300014150 | Grasslands Soil | VNGKITRILFLSTRTDPREEAELEASREPDSKITRVEISSPLPKPNIESE* |
Ga0134078_102114212 | 3300014157 | Grasslands Soil | MFLSTRTDPVQEVKLEAFREPDGKITQVEISSPLPKPDIGSE* |
Ga0132258_126805651 | 3300015371 | Arabidopsis Rhizosphere | DPRQEVELEASREPESKITQIEISSPLPKPDIESE* |
Ga0132258_136051063 | 3300015371 | Arabidopsis Rhizosphere | TTRILFLSTRTDPRQEVELEASREPASKVTQVEISSPLPKPEIGSE* |
Ga0132257_1036490971 | 3300015373 | Arabidopsis Rhizosphere | TRTDPRQEEEMEAKRDAGGKTTEVNISSPLPKPEAASD* |
Ga0132255_1058009891 | 3300015374 | Arabidopsis Rhizosphere | NPVEKVELEASREPNSKVTQVEISSPLTKPDIASE* |
Ga0182039_119880562 | 3300016422 | Soil | RILFLSTRTDPRQGVELEASREPNSKITQVQISSPLPKPDIGSE |
Ga0134112_102371363 | 3300017656 | Grasslands Soil | LFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPNIESE |
Ga0184608_104270931 | 3300018028 | Groundwater Sediment | FLSTRTDPRQEVELEASREPDGKITKVEISSPLPKPNIESE |
Ga0184612_101888031 | 3300018078 | Groundwater Sediment | TQTDPVERVELEASREPNSKVTQVEISSPLPKPKIASE |
Ga0173481_100556353 | 3300019356 | Soil | FLSTRTDPRQEVELEASREPDGKITQIEISSPLPKPNIESE |
Ga0137408_13389143 | 3300019789 | Vadose Zone Soil | MNVNADHEILFLSTRTDPRQEVELEASREPDSKVTQIEISSPLPKPEIGSE |
Ga0193748_10086643 | 3300019865 | Soil | SVNGKTTRILFLSTRTDPRQEVELEASLEPGSKVTQVEISSPLPKPEIGSE |
Ga0193720_10266852 | 3300019868 | Soil | RILFLSTRTDPRQEVELEASRQPDSKVTQVEISSPLPKPEIGSE |
Ga0193747_11374472 | 3300019885 | Soil | GKITRILSLSTQTDPVERVELEASREPKSKVTQVEISSPLPKPKIGSE |
Ga0193728_12530442 | 3300019890 | Soil | TTRILFLSTRTDPRQEVELEASREPDSKVTQVEISSPLPKPEIGSE |
Ga0193731_10463491 | 3300020001 | Soil | STRTDPRQEVELEASREPDSKITQIEISSPLPKPNIESE |
Ga0193721_10541382 | 3300020018 | Soil | LFLSTRTDPRQEVELEASREPDGKITQVEISSPLPKPDIESE |
Ga0193733_10193983 | 3300020022 | Soil | MFLSTRTDPVQKVELAARRAPGEKISRVEISSPLPKPEEAGE |
Ga0210406_112455022 | 3300021168 | Soil | RTDPRQEVELEASREPDAKITRVEISSPLPKPNIESE |
Ga0193719_100096626 | 3300021344 | Soil | EPVERVELEASREPDGKITQVEISSPLPKPEIESE |
Ga0210392_104431791 | 3300021475 | Soil | VNGKITRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIGSE |
Ga0222621_11153171 | 3300021510 | Groundwater Sediment | KVTRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIGSE |
Ga0126371_102254941 | 3300021560 | Tropical Forest Soil | GTRTDPRQEVELEASREPESKITQVEISSPLPKPEIDSE |
Ga0224452_12872791 | 3300022534 | Groundwater Sediment | STQTDPVERVELEASREPNSKVTQVEISSPLPKPEIGSE |
Ga0247688_11011071 | 3300024186 | Soil | ILFLSTRTDPRQEVELEASREPDSKVTQVQISSPLPKPEIESE |
Ga0207707_111773292 | 3300025912 | Corn Rhizosphere | NGKITRILFLSTRTDPRQEVELEASREPDSKITQIQISSPLPKPDIESE |
Ga0207671_110739532 | 3300025914 | Corn Rhizosphere | ITRLLFLSTRTDPRQEVELEASREPDSKITQVQISSPLPKPDIESE |
Ga0207693_101878983 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | STRTDPRQEVELEASREPDGKITQVEISSPLPKPNIESE |
Ga0207687_108256851 | 3300025927 | Miscanthus Rhizosphere | TDPRQEVELEASREPDGKITQIEISSPLPKPNIESE |
Ga0207702_106332691 | 3300026078 | Corn Rhizosphere | LSTRTDPRQEVELEASREPDSKITQIQISSPLPKPDIESE |
Ga0209863_102420002 | 3300026281 | Prmafrost Soil | VRNNISSNGNLTTIMFLSTRTDPVQKVEMDARRAPGEKISRVEISSP |
Ga0209648_100523034 | 3300026551 | Grasslands Soil | MFLSTRTGPLQEVKLEASREPGGKITQIEISFPLPKPDVQGE |
Ga0209590_102773661 | 3300027882 | Vadose Zone Soil | KLTTIMFLSTRSEPVERVELEASREPDGKITQVEISSPLPKPEIESE |
Ga0268266_101683052 | 3300028379 | Switchgrass Rhizosphere | DPRQEVKMEAKREAGGKTTEVNISSPLPKPEAASD |
Ga0268266_110948382 | 3300028379 | Switchgrass Rhizosphere | ILFLSTRTDPRQEVELEASREPDGKITQVEISSPLPKPNIESE |
Ga0137415_108839461 | 3300028536 | Vadose Zone Soil | GKITRILFLSTRTDPRQEVELEASREPDNKITQVEISSPLAKPNIESE |
Ga0307305_100105817 | 3300028807 | Soil | NGKITRILFLSTRTDPRQEVELEASREPDGKITKVEISSPLPKPNIESE |
Ga0307289_104226641 | 3300028875 | Soil | FLSTRTDPRQEVELEASREPDSKTTQIEISSPLPKPDIGSE |
Ga0307277_102046582 | 3300028881 | Soil | TRILSLSTQTDPVERVELEASRMPNSKVTQVEISSPLPKPKIASE |
Ga0075386_121136911 | 3300030916 | Soil | LFLSTRTDPRQEVELEASREPASKVTQVEISSPLPKPEIGSE |
Ga0075382_115391141 | 3300030917 | Soil | FLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIGNE |
Ga0170834_1062632372 | 3300031057 | Forest Soil | DPRQEVELEASREPDSKITQVQISSPLPKPDIESE |
Ga0307469_105752632 | 3300031720 | Hardwood Forest Soil | MNVNGKITRILFLSTRTDPRQEVELEASREPDSKVT |
Ga0307469_124836711 | 3300031720 | Hardwood Forest Soil | TDPRQEVELEASREPDSKITQVEISSPLPKLNIESE |
Ga0318510_101886821 | 3300032064 | Soil | RTDPRQEVELEASREPESKITQVKISSPLPKPEIDSE |
Ga0307471_1020962801 | 3300032180 | Hardwood Forest Soil | DPRQEVELEVSREQDGKITQVEISSPLPKPDIESE |
Ga0307472_1002449753 | 3300032205 | Hardwood Forest Soil | FLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIESE |
Ga0310810_103659953 | 3300033412 | Soil | RILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPEIGSE |
Ga0310811_101101725 | 3300033475 | Soil | ITRILFLSTRTDPRQEVELEASREPDSKITQVEISSPLPKPDIVSE |
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