Metagenome / Metatranscriptome Family F089333

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089333
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	74 residues
Representative Sequence	MSRQAMEQALGKLIMDVGFRDAFFRDPMAASLAAGIQLTDQERSALGRIRPGALAAFQRYLDGKRIDNRTEEVSA
Number of Associated Samples	89
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.25 %
% of genes near scaffold ends (potentially truncated)	24.77 %
% of genes from short scaffolds (< 2000 bps)	76.15 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (39.450 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.22% β-sheet: 0.00% Coil/Unstructured: 40.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.45.1.0: automated matches	d7c8sa1	7c8s	0.61543
c.45.1.1: Dual specificity phosphatase-like	d1ohea2	1ohe	0.61307
a.104.1.0: automated matches	d4ep6a_	4ep6	0.60627
a.104.1.0: automated matches	d2xbka_	2xbk	0.60492
a.104.1.0: automated matches	d3daxa1	3dax	0.597

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02321	OEP	44.04
PF00873	ACR_tran	3.67
PF09335	SNARE_assoc	3.67
PF00581	Rhodanese	2.75
PF00072	Response_reg	1.83
PF07992	Pyr_redox_2	1.83
PF00723	Glyco_hydro_15	1.83
PF13628	DUF4142	0.92
PF00857	Isochorismatase	0.92
PF01625	PMSR	0.92
PF13424	TPR_12	0.92
PF01554	MatE	0.92
PF03069	FmdA_AmdA	0.92
PF02566	OsmC	0.92
PF03729	DUF308	0.92
PF16576	HlyD_D23	0.92
PF01220	DHquinase_II	0.92
PF08281	Sigma70_r4_2	0.92
PF00196	GerE	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	88.07
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	3.67
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	3.67
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	3.67
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	1.83
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG0757	3-dehydroquinate dehydratase	Amino acid transport and metabolism [E]	0.92
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.92
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.92
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.92
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	0.92
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.32 %
Unclassified	root	N/A	14.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.32 %
Unclassified	root	N/A	14.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.32 %
Unclassified	root	N/A	14.68 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	20.18 %
Unclassified	root	N/A	14.68 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.34 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	20.18 %
Unclassified	root	N/A	14.68 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	20.18 %
Unclassified	root	N/A	14.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	20.18 %
Unclassified	root	N/A	14.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.83 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	18.35 %
Unclassified	root	N/A	14.68 %
Candidatus Rokubacteria bacterium 13_1_20CM_4_68_9	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_68_9	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2375681	Not Available	928	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101686968	Not Available	846	Open in IMG/M
3300000443\|F12B_11977435	Not Available	564	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1017909	Not Available	568	Open in IMG/M
3300000956\|JGI10216J12902_117052374	Not Available	529	Open in IMG/M
3300002908\|JGI25382J43887_10154455	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300002908\|JGI25382J43887_10295818	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	712	Open in IMG/M
3300005167\|Ga0066672_10059823	All Organisms → cellular organisms → Bacteria	2217	Open in IMG/M
3300005174\|Ga0066680_10027317	All Organisms → cellular organisms → Bacteria	3192	Open in IMG/M
3300005174\|Ga0066680_10439070	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300005176\|Ga0066679_10783253	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005179\|Ga0066684_10028931	All Organisms → cellular organisms → Bacteria	2990	Open in IMG/M
3300005180\|Ga0066685_11085259	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	524	Open in IMG/M
3300005184\|Ga0066671_10107814	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300005332\|Ga0066388_102770871	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300005467\|Ga0070706_100323747	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300005557\|Ga0066704_10361571	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300005561\|Ga0066699_11047619	Not Available	564	Open in IMG/M
3300005568\|Ga0066703_10255689	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300005568\|Ga0066703_10616054	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	631	Open in IMG/M
3300006032\|Ga0066696_10052610	All Organisms → cellular organisms → Bacteria	2292	Open in IMG/M
3300006173\|Ga0070716_100742793	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300006794\|Ga0066658_10483724	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300006796\|Ga0066665_10309638	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300006800\|Ga0066660_10217156	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300006844\|Ga0075428_101252337	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300006845\|Ga0075421_102257645	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300006852\|Ga0075433_10552072	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300006854\|Ga0075425_100073031	All Organisms → cellular organisms → Bacteria	3865	Open in IMG/M
3300006854\|Ga0075425_102506323	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	571	Open in IMG/M
3300006871\|Ga0075434_100994063	All Organisms → cellular organisms → Bacteria → Proteobacteria	853	Open in IMG/M
3300006903\|Ga0075426_10078802	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300006903\|Ga0075426_10189048	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1491	Open in IMG/M
3300006903\|Ga0075426_10579234	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	837	Open in IMG/M
3300006904\|Ga0075424_100922510	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	931	Open in IMG/M
3300007265\|Ga0099794_10133256	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300007265\|Ga0099794_10692590	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	542	Open in IMG/M
3300009012\|Ga0066710_100077789	All Organisms → cellular organisms → Bacteria	4304	Open in IMG/M
3300009038\|Ga0099829_11142075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	646	Open in IMG/M
3300009089\|Ga0099828_11476766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	600	Open in IMG/M
3300009090\|Ga0099827_10090931	All Organisms → cellular organisms → Bacteria	2407	Open in IMG/M
3300009137\|Ga0066709_100006877	All Organisms → cellular organisms → Bacteria	9709	Open in IMG/M
3300009137\|Ga0066709_101128948	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300009137\|Ga0066709_103711590	Not Available	554	Open in IMG/M
3300009147\|Ga0114129_10134335	All Organisms → cellular organisms → Bacteria	3396	Open in IMG/M
3300009147\|Ga0114129_13237473	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300010303\|Ga0134082_10554259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300010304\|Ga0134088_10464410	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300010336\|Ga0134071_10503846	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	625	Open in IMG/M
3300010358\|Ga0126370_10138405	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M
3300010360\|Ga0126372_10020344	All Organisms → cellular organisms → Bacteria	3899	Open in IMG/M
3300012410\|Ga0134060_1480781	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	840	Open in IMG/M
3300012685\|Ga0137397_10019427	All Organisms → cellular organisms → Bacteria	4763	Open in IMG/M
3300012685\|Ga0137397_10356698	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1089	Open in IMG/M
3300012685\|Ga0137397_10748848	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	725	Open in IMG/M
3300012922\|Ga0137394_10166822	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300012922\|Ga0137394_10352731	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300012925\|Ga0137419_10492205	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300012927\|Ga0137416_10614822	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300012929\|Ga0137404_10040227	All Organisms → cellular organisms → Bacteria → Proteobacteria	3522	Open in IMG/M
3300012944\|Ga0137410_10132479	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1882	Open in IMG/M
3300012944\|Ga0137410_10838884	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300015241\|Ga0137418_10413218	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300015245\|Ga0137409_10710792	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	839	Open in IMG/M
3300015358\|Ga0134089_10439099	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300017656\|Ga0134112_10426810	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300017659\|Ga0134083_10097839	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300017997\|Ga0184610_1000518	All Organisms → cellular organisms → Bacteria → Proteobacteria	9021	Open in IMG/M
3300018053\|Ga0184626_10084177	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300018056\|Ga0184623_10112906	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_68_9	1257	Open in IMG/M
3300018056\|Ga0184623_10432938	Not Available	572	Open in IMG/M
3300018076\|Ga0184609_10004178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4943	Open in IMG/M
3300018468\|Ga0066662_12092628	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
3300018482\|Ga0066669_10291991	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300025910\|Ga0207684_10712650	All Organisms → cellular organisms → Bacteria → Acidobacteria	852	Open in IMG/M
3300026295\|Ga0209234_1056351	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300026296\|Ga0209235_1165239	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300026312\|Ga0209153_1200195	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300026330\|Ga0209473_1027586	All Organisms → cellular organisms → Bacteria	2598	Open in IMG/M
3300026527\|Ga0209059_1051699	All Organisms → cellular organisms → Bacteria	1806	Open in IMG/M
3300026530\|Ga0209807_1070833	All Organisms → cellular organisms → Bacteria	1562	Open in IMG/M
3300026550\|Ga0209474_10046179	All Organisms → cellular organisms → Bacteria	3146	Open in IMG/M
3300026550\|Ga0209474_10578311	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_4_68_9	573	Open in IMG/M
3300026551\|Ga0209648_10001695	All Organisms → cellular organisms → Bacteria	17898	Open in IMG/M
3300026551\|Ga0209648_10389515	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	925	Open in IMG/M
3300026552\|Ga0209577_10324179	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300027671\|Ga0209588_1244032	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	550	Open in IMG/M
3300027846\|Ga0209180_10658532	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	573	Open in IMG/M
3300027862\|Ga0209701_10348999	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300027873\|Ga0209814_10520117	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	528	Open in IMG/M
3300027882\|Ga0209590_10664899	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300027909\|Ga0209382_11938294	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	568	Open in IMG/M
3300028536\|Ga0137415_10620374	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300030006\|Ga0299907_10853987	Not Available	681	Open in IMG/M
3300030606\|Ga0299906_10142514	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
3300030620\|Ga0302046_10040845	All Organisms → cellular organisms → Bacteria → Proteobacteria	3783	Open in IMG/M
3300031720\|Ga0307469_10651952	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300031720\|Ga0307469_10756717	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300031820\|Ga0307473_11355497	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300032174\|Ga0307470_11252773	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300032180\|Ga0307471_100509071	All Organisms → cellular organisms → Bacteria → Acidobacteria	1353	Open in IMG/M
3300032180\|Ga0307471_103978923	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.32%
Host-Associated	Host-Associated	14.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.73%
Plants	Host-Associated → Plants	14.68%
Aquatic	Environmental → Aquatic	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.68%
Sediment	Environmental → Aquatic → Sediment	4.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.68%
Loam	Environmental → Terrestrial → Soil → Loam	5.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.59%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.10%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.01%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	8.26%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010122	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_23756812	3300000033	Soil	MSRPAMEQVLGKLIMDARFRDAFFRDPLAATLAARVELTARERDALGHIRPGALAAFQRYLDGKWIRDWIEEVSA*
INPhiseqgaiiFebDRAFT_1016869683	3300000364	Soil	MRSTMSRPAMEQVLGKLIMDARFRDAFFRDPLAATLAARVELTARERDALGHIRPGALAAFQRYLDGKWIRDWIEEVSA*
F12B_119774351	3300000443	Soil	MRRPAVEQVLGKLIMDARFRDAFFRDPLAATLAARVELTARERDALGHIRPGALAGFQRDLDGKWIRDWIEEVSA*
KanNP_Total_F14TBDRAFT_10179091	3300000709	Soil	RPAMEQVLGKLIMDARFRDAFFRDPLAATLAARVELTARERDALGHIRPGALAAFQRYLDGKWIRDWIEEVSA*
JGI10216J12902_1170523741	3300000956	Soil	FRDAFFRDPLAATLAARVELTARERDALGHIRPGALAAFQRYLDGKWIRDWIEEVSA*
JGI25382J43887_101544552	3300002908	Grasslands Soil	MRSVMSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTVLGRIRPGALAAFQQYLDRKRIDDWSAA*
JGI25382J43887_102958181	3300002908	Grasslands Soil	MEQALGKLVMDAAFRDAFFRDPMAASLAAGIQLTDHERSALARIRPGALAAFQRYLDGKRIGNAVEEVSA*
Ga0066672_100598233	3300005167	Soil	MRSTMSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRIDDRSEEATAS*
Ga0066680_100273173	3300005174	Soil	MRSVMSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTVLGRIRPGALAAFQQYLDRKRIDDWRAA*
Ga0066680_104390701	3300005174	Soil	MSQPAMEQALGKLVMDAGFRDAFLLDPMAASRAAEIELTDRERSALARIPRGALAAFRRY
Ga0066679_107832532	3300005176	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRIDDRSEEATAS*
Ga0066684_100289313	3300005179	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRLDDQSEEAAAWSAVGASVISPH*
Ga0066685_110852591	3300005180	Soil	MRSAMSRQAMEQALGKLVMDVAFRDAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYVDGRWIGTWHEEPRASA*
Ga0066671_101078142	3300005184	Soil	EQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSAPGRIRPGALAAFQRYLDGKRLDDQSEEAAAWSAVGASVISPH*
Ga0066388_1027708712	3300005332	Tropical Forest Soil	MSRQAMEQALGKLIMDARFRDAFFRDPAAASLTAGLQLTHGERSALGRIRPGALAAFQRYLDDKRIGNGIEEASA*
Ga0070706_1003237473	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MRSTMSRPAMEQVLGKLIMDARFRDAFFRDPLAATLSARVELTARERDALGHIRPGALAAFQRYLDGKWIRDWIDEVSA*
Ga0066704_103615713	3300005557	Soil	MSQPAMEQTLGKLVMDAGFRDAFLLDPMAASRAAEIELTDRERSALARIPRGALAAFQRYLDGRWIGSWADGTAHDEPGRPRVQRNG*
Ga0066699_110476192	3300005561	Soil	MRSTMSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRLDDQSEEAAAWSAVGASVISPH*
Ga0066703_102556892	3300005568	Soil	MSRQAMEQALGKLVMDVGFRDAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYVDGRWIGTWHEEPRASA*
Ga0066703_106160541	3300005568	Soil	MRSTMSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRIDDRS
Ga0066696_100526102	3300006032	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRLDDQSEEGAAWSAVGASVISPH*
Ga0070716_1007427932	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSRQAMEQALGKLVMDLSFREAFFRDPLAASLAAGLQLTKPELGALGDIRPGALAAFRRYLDGKWIGDRIEDLSA*
Ga0066658_104837242	3300006794	Soil	MRSTMSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRLDDQSEEAVAS*
Ga0066665_103096384	3300006796	Soil	MRSVMSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTVLGRIRPGALAAFQQYLDRKRIDDWRAEVSA*
Ga0066660_102171562	3300006800	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSAPGRIRPGALAAFQRYLDGKRLDDQSEEAAAWSAVGASVISPH*
Ga0075428_1012523371	3300006844	Populus Rhizosphere	MRSAMSRPAMEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYLDGQRAGSW
Ga0075421_1022576451	3300006845	Populus Rhizosphere	MRSAMSRPAMEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYLDGQRAGSWREEPRASA*
Ga0075433_105520722	3300006852	Populus Rhizosphere	MRSAMSRPAMEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYLDGQRAWSWREEPRASA*
Ga0075425_1000730312	3300006854	Populus Rhizosphere	MEQALGKLVMDVGFRDAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYLDGQRAWSWREEPRASA*
Ga0075425_1025063231	3300006854	Populus Rhizosphere	MRSVMSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTALGRIRPGALAAFQRY
Ga0075434_1009940632	3300006871	Populus Rhizosphere	MSRQAMEQALGKLVMDLAFREAFFRDPLAASLAAGLQLTKQELGALGDIRPGALAAFRRYLDGKWIGDRIEDLSA*
Ga0075426_100788022	3300006903	Populus Rhizosphere	MSRQAMEQTLGKLVMDVGFREAFFRDPLAASRAAGIHLTEDERRVLARIRPGALAAFQRYLEGKRIDVA*
Ga0075426_101890482	3300006903	Populus Rhizosphere	MSRQAMEQALGKLVMDVPFRDAFFRDPLAASLAAGLQLTEQDLRALGYIRRGALAAFQRYLDGKWIGDRIEDLSA*
Ga0075426_105792341	3300006903	Populus Rhizosphere	GPMRSAMSRPAMEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYLDGQRAWSWREEPRASA*
Ga0075424_1009225102	3300006904	Populus Rhizosphere	MEQALGKLVMDVGFRDAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYVDGRWIGAWREEPRASA*
Ga0075435_1002521941	3300007076	Populus Rhizosphere	MQAAALSNQGAMDPALGKPVTDGGFRHAFFRDPARARDAAGIPLTDGERNALTRI
Ga0099794_101332562	3300007265	Vadose Zone Soil	MMSRQAMEQALGKLVMDVGFRDAFFRDPMAASLAAGLQLTDQERRALERIRPGALAAFQRYLDGKRIGNWVEEASA*
Ga0099794_106925901	3300007265	Vadose Zone Soil	VMDVGVRDAFFRDPMAASVAAGILLTDRERSALGRIQPGALAAFRRYLDGKRVGNWIAEVSA*
Ga0066710_1000777893	3300009012	Grasslands Soil	MSRQAMEQALGKLVMDVAFRDAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYVDGRWIGTWHEEPRASA
Ga0099829_111420752	3300009038	Vadose Zone Soil	MEQALGKLVMDVGFRDAFFRDPMAASLAAGLQLTDQERRALERIRPGALAAFQRYLDGKRVGNWVEEASA*
Ga0099828_114767662	3300009089	Vadose Zone Soil	MEQALGKLVMDHGFRDAFFRDPMAASLAAGIQLTDHECSSLGRIRPGALAAFQRYLDGKRIA*
Ga0099827_100909312	3300009090	Vadose Zone Soil	MMSRQAMEQALGKLVMDVGFRDAFFRDPMAASLAAGLQLTDQERRALERIRPGALAAFQRYLDGKRVGNWVEEASA*
Ga0066709_1000068778	3300009137	Grasslands Soil	MSRQAMEQALGKLVMDVAFRDAFFRDPTAASLAAGLELTDEDRGALGRIRPGALAAFQRYVDGRWIGTWHEEPRASA*
Ga0066709_1011289481	3300009137	Grasslands Soil	MSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTVLGRIRPGALAAFQQYLDPKRIDDWSAA*
Ga0066709_1037115901	3300009137	Grasslands Soil	MEQVLGKLIMDARFRDAFFRDPLAATLAARVERTPRERDALGHIRPSALAAFQRYLDGKWIRYW
Ga0114129_101343353	3300009147	Populus Rhizosphere	MEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYLDGQRAWSWREEPRASA*
Ga0114129_132374732	3300009147	Populus Rhizosphere	MSRQAVEQELGKLVMDVQFRDAFFRDPLVASLAAGIQLTDRERSTLGRIRPGALAAFQRYLGG
Ga0075423_101674434	3300009162	Populus Rhizosphere	MQAAALSNQGAMDPALGKSVTDGGFRHAFFRDPARARDAAGIPLTDGERNALTR
Ga0126382_112701771	3300010047	Tropical Forest Soil	MEVRSLSNQHAMEQALGELVMDGGFRDAFFRDPAVASEAAGIPLTDRERSALTRIRPG
Ga0127488_11458722	3300010122	Grasslands Soil	MNQQAMEQALGKLVMDGGVRDAFLRDPAVASEAAGIPLTDRERNVLTRIRPGALAAF
Ga0134082_105542592	3300010303	Grasslands Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGK
Ga0134088_104644102	3300010304	Grasslands Soil	MRAMMSRQAIEQALGKLIMDVGFRDAFFRDPMAASLAAGIHLTDQERRVLGRIRPGALAAFQRYLDGKRIDNRTEEVSA*
Ga0134071_105038461	3300010336	Grasslands Soil	MSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTVLGRIRPGALAAFQQYLDRKRIDDWRAEVSA*
Ga0126370_101384052	3300010358	Tropical Forest Soil	MSKRGVEQALGKLVMDAEFRDAFFRNPAGTILATGIELTEQERGALGRIRPGALAAFQRYLEGKRLASIEDVHRS*
Ga0126372_100203443	3300010360	Tropical Forest Soil	MSKRGVEQALGKLVMDAEFRDAFFRNPAGTILATGIELTEPERGALGRIRPGALAAFQRYLEGKRLASIEDVHRS*
Ga0126377_104813921	3300010362	Tropical Forest Soil	MEVRSLSNQHAMEQALGKLVMDGGFRDAFFRDPAVASEAAGIPLTDRERSALTRIRPGALAAFQ
Ga0137361_112198041	3300012362	Vadose Zone Soil	MEARSLSNQQAMEQALGKLVMDGGFRDAFFRDPAVASEAAGIPLTDRERNALTRIRSGALAAFQR
Ga0134060_14807812	3300012410	Grasslands Soil	MEQALGKLVMDVAFREEFFRDPMAASLAAGIQLTDQERSALRRIRPGALAAFQRYLDGKRIDNRTEEVSA*
Ga0137397_100194272	3300012685	Vadose Zone Soil	MVMSRQAMEQALGKLVMDGDFRDAFFRDPAVASEAAGLPLTEHERSALTRIRPGALAAFQRYLDDKRLDEWHEEMSAT*
Ga0137397_103566982	3300012685	Vadose Zone Soil	MRSVMSQQAMEQALGKLVMDVGFRDAFFRDPTVASLAAGIQLTDEERRALERIRPGALAAFQRYLDGKRGGSWVDEARAS*
Ga0137397_107488482	3300012685	Vadose Zone Soil	MEQALGKLVMDAAFRDAFFRDPMAASLAAGMELTDQERSALGRIRPGALAAFQRYLEGKRIGHWVEEVSA*
Ga0137394_101668222	3300012922	Vadose Zone Soil	MSQQAMEQALGKLVMDVGFRDAFFRDPTVASLAAGIQLTDEERRALERIRPGALAAFQRYLDGKRGGSWVDEARAS*
Ga0137394_103527312	3300012922	Vadose Zone Soil	MEQALGKLVMDAAFRDAFFRDPMAASLAAGMELTDQERSALARIRPGALAAFQRYLEGKRIGHWVEEVSA*
Ga0137419_104922052	3300012925	Vadose Zone Soil	RQAMEQALGKLVMDWDFRDAFFRDPAVASEAAGLPLTEHERSALTRIRPGALAAFQRYLDDKRLDEWHEEMSAT*
Ga0137416_106148222	3300012927	Vadose Zone Soil	MEQALGKLIMDVGFRDAFFRDPMAASLAAGLQLTDQERRALERIRPGALAAFQRYLDGKRVGNWVEEASA*
Ga0137404_100402273	3300012929	Vadose Zone Soil	MEQALGKLVMDVGFRDAFFRDPTAARLAAGIQLTDQECSALRRIRPGALAAFQRYLDGKRIGNWVEEVSA*
Ga0137410_101324792	3300012944	Vadose Zone Soil	MVMSRQAMEQALGKLVMDGDFRDAFFRDPTGASEAAGLPLTEHERSALTRIRPGALAAFQRYLDDKRLDEWHEEMSAT*
Ga0137410_108388842	3300012944	Vadose Zone Soil	MSRQAMEQALGKLVMDVGFRDAFFRDPTAASLAAGIQLTDQECSVLRRIRPGALAAFQRYLDGKRIGNWVEEV
Ga0137418_104132181	3300015241	Vadose Zone Soil	MSRQAMEQALGKLVMDVGFRDAFFRDPTAASLAAGIQLTDQECSVLRRIRPGALAAFQRYLDGKRI
Ga0137409_107107922	3300015245	Vadose Zone Soil	MSRQAMEQALGKLVMDVGFRDAFFRDPTAASLAAGIQLTDQECSVLRRIRPGALAAFQRYLDGKRIGNWVEEVSA*
Ga0134089_104390992	3300015358	Grasslands Soil	LGKLIMDVGFRDAFFRDPMAASLAAGIHLTDQERRVLGRIRPGALAAFQRYLDGKRIDNRTEEVSA*
Ga0134112_100722222	3300017656	Grasslands Soil	MSRQAMEQALGKLVMDSGFRAAFFRDPSAASEAAGIHLTDDEWSALTRIRPGALAAFE
Ga0134112_104268101	3300017656	Grasslands Soil	TQMRAMMSRQAIEQALGKLIMDVGFRDAFFRDPMAASLAAGIQLTDQERSALRRIRPGALAAFQRYLDGKRIDNRTEEVSA
Ga0134083_100978392	3300017659	Grasslands Soil	MSRQAIEQALGKLIMDVGFRDAFFRDPMAASLAAGIHLTDQERRVLGRIRPGALAAFQRYLDGKRIDNRTEEVSA
Ga0184610_10005187	3300017997	Groundwater Sediment	MSQPAMERALGKLVMDVGFRDAFVRDPIAASRAAGIELTDRERSALARIPRGALAAFQRYLDGKWIASSAEEISA
Ga0184626_100841772	3300018053	Groundwater Sediment	MIRQAMEQALGKLVMDVRFRDAFFRDPMAASLAAGIQLTEHERSALGRIRPGALAAFQRYLDGKRIEDPIGELRESA
Ga0184623_101129061	3300018056	Groundwater Sediment	MSQPAMERALGKLMMDVGFRDAFVRDPIAASRAAGIELTDRERSALARIPRGALAAFQRYLDGKWIASSAEEISA
Ga0184623_104329381	3300018056	Groundwater Sediment	MSQPAMERALGKLVMDVGFRDAFVRDPIAASRAAGIELTDRERSALARIPRGALAAFQQYLDGKWIGSSAEEISA
Ga0184609_100041782	3300018076	Groundwater Sediment	MSQPAMERALGKLVMDVGFRDAFVRDAIAASRAAGIELTDRERSALARIPRGALAAFQRYLDGKWIASSAEEISA
Ga0066662_120926282	3300018468	Grasslands Soil	MRSVMSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTVLGRIRPGALAAFQQYLDRKRIDDWRAEVSA
Ga0066669_102919911	3300018482	Grasslands Soil	ALGKLVMDGGFRDAFFRDPTVASEAAGIPLTEHERSALMRIRPGALAAFQRYLDDKRLDEWREEMSAT
Ga0207684_107126503	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	AMEQVLGKLIMDARFRDAFFRDPLAATLSARVELTARERDALGHIRPGALAAFQRYLDGKWIRDWIDEVSA
Ga0209234_10563511	3300026295	Grasslands Soil	MSRTAMEQALGKLVMDVAFRDAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYVDGRWIGTWHEEPRASA
Ga0209235_11652392	3300026296	Grasslands Soil	MRSVMSRQAMEQALGKLVMDVEFRRAFFHDPTAASEAAGIELSEHERTVLGRIRPGALAAFQQYLDRKRIDDWSAA
Ga0209153_12001952	3300026312	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSAPGRIRPGALAAFQRYLDGKRLDDQSEEAAAWSAVGASVISPH
Ga0209473_10275861	3300026330	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRLDDQSEEGAA
Ga0209059_10516992	3300026527	Soil	MRSTMSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRLDDQSEEAAAWSAVGASVISPH
Ga0209807_10708331	3300026530	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKR
Ga0209474_100461791	3300026550	Soil	MSRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRLDDQSEEGAAWSAVGASVISPH
Ga0209474_105783112	3300026550	Soil	MRSVMSRQGMERALGKLVMDVGFREAFFRDPMAASEAAGIPLTDQERTALGRIRPGALAAFQRYLDAKWIEELSA
Ga0209648_1000169514	3300026551	Grasslands Soil	MRSTMSRQAMEQALGKLVMDHGFRDAFFRDPMAASLAAGIQLTDHECSSLGRIRPGALAAFQRYLDGKRIA
Ga0209648_103895152	3300026551	Grasslands Soil	MEARPLSNQQAMEQALGKLVMDGGFRDAFFRDPSAASEAAGIPLTDRERNVLTRIRPGALAAFQRYLDAKRLDDWREEATA
Ga0209577_103241792	3300026552	Soil	MTRQAMEQALGKLVMDGRFREAFFRDPLAAARAAGIPLTDQERSAPGRIRPGALAAFQRYLDGKRLDDQSEEAAAWSAVGASVISPH
Ga0209588_12440322	3300027671	Vadose Zone Soil	MRSMMSRQAMEQALGKLVMDVGFRDAFFRDPMAASLAAGLQLTDQERRALERIRPGALAAFQRYLDGKRIGNWVEEASA
Ga0209180_106585322	3300027846	Vadose Zone Soil	MSRQAMEQALGKLVMDHGFRDAFFRDPMAASLAAGIQLTDHECSSLGRIRPGALAAFHR
Ga0209701_103489991	3300027862	Vadose Zone Soil	MSRSAMEQALGKLVMDVAFRDAFFRDPLAASLAAGIQLTDQECSALERIPPGALAAFKRYLDGKRFSNWVDAIAVRDRASGR
Ga0209814_105201172	3300027873	Populus Rhizosphere	MRSAMSRPAMEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQR
Ga0209590_106648992	3300027882	Vadose Zone Soil	MRSMMSRQAMEQALGKLVMDVGFRDAFFRDPMAASLAAGLQLTDQERRALERIRPGALAAFQRYLDGKRVGNWVEEASA
Ga0209382_119382942	3300027909	Populus Rhizosphere	MRSAMSRPAMEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFQRYLDGQRAGSWREEPRASA
Ga0137415_106203742	3300028536	Vadose Zone Soil	MSRQAMEQALGKLIMDVGFRDAFFRDPMAASLAAGIQLTDQERSALGRIRPGALAAFQRYLDGKRIDNRTEEVSA
Ga0299907_108539872	3300030006	Soil	MEAGSLSNQQAMEQALGKLVMDDRFRDAFFIDPAVATEAAGIPLTDRERNALARIRPGALAAFQRYLEAKRA
Ga0299906_101425141	3300030606	Soil	MSRQAMEQALGKLVMDVQFRDAFFRDPLAASLAAGVQLTDRERSALGRIRPGALAAFQRYLGGKQIGNWTEGATAWDALDRGRHGLRT
Ga0302046_100408457	3300030620	Soil	MSRQAMEQALGKLVMDVQFRDAFFRDPLAASLAAGVQLTDRERSALGRIRPGALAAFQRYLGGKQIGNWTEGATAW
Ga0307469_106519522	3300031720	Hardwood Forest Soil	MSRQAMEQALGKLVMDLSFREAFFRDPLAASLAAGLQLTKQELGALGDIRPGALAAFRRYLDGKWIGDRIEDLSA
Ga0307469_107567172	3300031720	Hardwood Forest Soil	MSRTAMEQALGKLVMDVGFREAFFRDPTAASLAAGLELTDEERGALGRIRPGALAAFHRYVDGRRIGTWREEPRASA
Ga0307473_113554972	3300031820	Hardwood Forest Soil	DVGTWKMSRQAMEQALGKLVMDLSFREAFFRDPLAASLAAGLQLTKQELGALGDIRPGALAAFRRYLDGKWIGDRIEDLSA
Ga0307470_112527732	3300032174	Hardwood Forest Soil	MSRQAMEQALGKLVMDLAFREAFFRDPLAASLAAGLQLTKQELSALGDIRPGALAAFRRYLDGKWIGDRIEDLSA
Ga0307471_1005090712	3300032180	Hardwood Forest Soil	MRSTMSRQAMEQALGKLVMDVRFREAFFRDPLAAARAAGIPLTDQERSALGRIRPGALAAFQRYLDGKRIDDRSEEATAS
Ga0307471_1039789232	3300032180	Hardwood Forest Soil	FREAFFVDPTAASVAAGIELTDHERSALGRIRPGALAAFQRYLDGKHIDPWVEKISA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089333

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences