Metagenome / Metatranscriptome Family F089232

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089232
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	VEIGERRQANILVLQPVGRIDNLTSAEFQARLLAAVTSS
Number of Associated Samples	87
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.56 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	88.99 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.459 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.202 % of family members)
Environment Ontology (ENVO)	Unclassified (60.550 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.459 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 17.91% β-sheet: 20.90% Coil/Unstructured: 61.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00528	BPD_transp_1	16.51
PF02668	TauD	8.26
PF10370	DUF2437	6.42
PF16490	Oxidoreduct_C	4.59
PF11746	DUF3303	2.75
PF05656	DUF805	2.75
PF07883	Cupin_2	2.75
PF06147	DUF968	1.83
PF12911	OppC_N	1.83
PF07730	HisKA_3	0.92
PF01699	Na_Ca_ex	0.92
PF12760	Zn_Tnp_IS1595	0.92
PF13683	rve_3	0.92
PF13673	Acetyltransf_10	0.92
PF12706	Lactamase_B_2	0.92
PF01355	HIPIP	0.92
PF08479	POTRA_2	0.92
PF00583	Acetyltransf_1	0.92
PF00775	Dioxygenase_C	0.92
PF00072	Response_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	8.26
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	2.75
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.92
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.92
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.92
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.92
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.92
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
All Organisms	root	All Organisms	49.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
cellular organisms	root	All Organisms → cellular organisms	49.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	33.03 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.94 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	7.34 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.92 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.83 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.92 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.92 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.92 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.92 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.92 %
Tistrella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	0.92 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	0.92 %
Roseospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Roseospira	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
unclassified Candidatus Solibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter	0.92 %
Roseospira visakhapatnamensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Roseospira → Roseospira visakhapatnamensis	0.92 %
Oxalobacteraceae bacterium IMCC9480	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	0.92 %
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.92 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.92 %
Tistrella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
Agrobacterium deltaense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium deltaense	0.92 %
Candidatus Solibacter sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	0.92 %
Roseospira visakhapatnamensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Roseospira → Roseospira visakhapatnamensis	0.92 %
Oxalobacteraceae bacterium IMCC9480	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	0.92 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.92 %
Tistrella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.46 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	7.34 %
Agrobacterium deltaense Zutra 3/1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium deltaense → Agrobacterium deltaense Zutra 3/1	0.92 %
Candidatus Solibacter sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	0.92 %
Roseospira visakhapatnamensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Roseospira → Roseospira visakhapatnamensis	0.92 %
Oxalobacteraceae bacterium IMCC9480	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	0.92 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.92 %
Tistrella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10073531	Not Available	672	Open in IMG/M
3300004082\|Ga0062384_100434701	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300005171\|Ga0066677_10068083	All Organisms → cellular organisms → Bacteria → Proteobacteria	1822	Open in IMG/M
3300005437\|Ga0070710_10389202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	932	Open in IMG/M
3300005471\|Ga0070698_101740251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	576	Open in IMG/M
3300005560\|Ga0066670_10385988	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300005569\|Ga0066705_10669072	Not Available	629	Open in IMG/M
3300006034\|Ga0066656_10624933	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300006175\|Ga0070712_101765847	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300006806\|Ga0079220_10934749	All Organisms → cellular organisms → Bacteria → Proteobacteria	678	Open in IMG/M
3300010320\|Ga0134109_10205195	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300010360\|Ga0126372_12433442	Not Available	574	Open in IMG/M
3300010361\|Ga0126378_11511529	Not Available	761	Open in IMG/M
3300010379\|Ga0136449_103315932	Not Available	619	Open in IMG/M
3300010398\|Ga0126383_11757259	Not Available	709	Open in IMG/M
3300012205\|Ga0137362_10805632	Not Available	805	Open in IMG/M
3300012209\|Ga0137379_11016470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	734	Open in IMG/M
3300012923\|Ga0137359_10362373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300012923\|Ga0137359_10804930	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300014501\|Ga0182024_10465688	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1616	Open in IMG/M
3300016270\|Ga0182036_10618025	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300016270\|Ga0182036_10851990	Not Available	745	Open in IMG/M
3300016294\|Ga0182041_10267929	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → unclassified Candidatus Solibacter → Candidatus Solibacter sp.	1399	Open in IMG/M
3300016319\|Ga0182033_10093119	Not Available	2196	Open in IMG/M
3300016319\|Ga0182033_10311136	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300016319\|Ga0182033_12108818	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300016319\|Ga0182033_12117514	Not Available	513	Open in IMG/M
3300016341\|Ga0182035_10001964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	10680	Open in IMG/M
3300016341\|Ga0182035_11517576	Not Available	603	Open in IMG/M
3300016371\|Ga0182034_11733358	Not Available	550	Open in IMG/M
3300016387\|Ga0182040_10270402	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300016387\|Ga0182040_10368798	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300016404\|Ga0182037_11269027	Not Available	649	Open in IMG/M
3300016404\|Ga0182037_12079623	Not Available	510	Open in IMG/M
3300016422\|Ga0182039_11917764	Not Available	544	Open in IMG/M
3300016445\|Ga0182038_10100773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2097	Open in IMG/M
3300016445\|Ga0182038_11096756	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300017955\|Ga0187817_10061245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2330	Open in IMG/M
3300018482\|Ga0066669_12275028	Not Available	516	Open in IMG/M
3300020581\|Ga0210399_10708362	Not Available	827	Open in IMG/M
3300020583\|Ga0210401_10952930	Not Available	717	Open in IMG/M
3300021178\|Ga0210408_11028694	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300021432\|Ga0210384_11657112	Not Available	545	Open in IMG/M
3300021476\|Ga0187846_10191435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	859	Open in IMG/M
3300021560\|Ga0126371_11621118	Not Available	773	Open in IMG/M
3300021560\|Ga0126371_12696913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300021560\|Ga0126371_13141873	Not Available	559	Open in IMG/M
3300022530\|Ga0242658_1086078	Not Available	730	Open in IMG/M
3300025929\|Ga0207664_10333815	Not Available	1339	Open in IMG/M
3300026508\|Ga0257161_1113109	Not Available	567	Open in IMG/M
3300026557\|Ga0179587_10725404	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300027680\|Ga0207826_1060562	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300027727\|Ga0209328_10044960	Not Available	1356	Open in IMG/M
3300027783\|Ga0209448_10014232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	2575	Open in IMG/M
3300027795\|Ga0209139_10052593	Not Available	1429	Open in IMG/M
3300027903\|Ga0209488_10228477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1398	Open in IMG/M
3300028047\|Ga0209526_10492558	Not Available	800	Open in IMG/M
3300028536\|Ga0137415_10331020	All Organisms → cellular organisms → Bacteria → Proteobacteria	1327	Open in IMG/M
3300031231\|Ga0170824_101861274	Not Available	673	Open in IMG/M
3300031543\|Ga0318516_10283215	Not Available	958	Open in IMG/M
3300031545\|Ga0318541_10190230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1134	Open in IMG/M
3300031546\|Ga0318538_10217315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1023	Open in IMG/M
3300031549\|Ga0318571_10252449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	649	Open in IMG/M
3300031572\|Ga0318515_10285561	Not Available	885	Open in IMG/M
3300031573\|Ga0310915_10663425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300031640\|Ga0318555_10077504	All Organisms → cellular organisms → Bacteria → Proteobacteria	1727	Open in IMG/M
3300031668\|Ga0318542_10125449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Roseospira → Roseospira visakhapatnamensis	1259	Open in IMG/M
3300031668\|Ga0318542_10258554	Not Available	887	Open in IMG/M
3300031668\|Ga0318542_10477294	Not Available	647	Open in IMG/M
3300031668\|Ga0318542_10503209	Not Available	630	Open in IMG/M
3300031681\|Ga0318572_10780260	Not Available	568	Open in IMG/M
3300031719\|Ga0306917_10619628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	851	Open in IMG/M
3300031736\|Ga0318501_10032589	All Organisms → cellular organisms → Bacteria	2318	Open in IMG/M
3300031744\|Ga0306918_10246555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1362	Open in IMG/M
3300031744\|Ga0306918_10823967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300031751\|Ga0318494_10148704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1318	Open in IMG/M
3300031768\|Ga0318509_10409553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Tistrella	758	Open in IMG/M
3300031768\|Ga0318509_10560642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031770\|Ga0318521_10058908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2010	Open in IMG/M
3300031777\|Ga0318543_10128273	Not Available	1105	Open in IMG/M
3300031777\|Ga0318543_10414964	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300031781\|Ga0318547_10059157	All Organisms → cellular organisms → Bacteria	2089	Open in IMG/M
3300031792\|Ga0318529_10427008	Not Available	617	Open in IMG/M
3300031795\|Ga0318557_10254385	Not Available	805	Open in IMG/M
3300031796\|Ga0318576_10621422	Not Available	509	Open in IMG/M
3300031833\|Ga0310917_10058897	All Organisms → cellular organisms → Bacteria	2379	Open in IMG/M
3300031833\|Ga0310917_10406570	Not Available	925	Open in IMG/M
3300031845\|Ga0318511_10620056	Not Available	505	Open in IMG/M
3300031846\|Ga0318512_10488907	Not Available	623	Open in IMG/M
3300031893\|Ga0318536_10404456	Not Available	689	Open in IMG/M
3300031894\|Ga0318522_10104885	Not Available	1049	Open in IMG/M
3300031897\|Ga0318520_10336295	Not Available	914	Open in IMG/M
3300031910\|Ga0306923_10170107	All Organisms → cellular organisms → Bacteria	2489	Open in IMG/M
3300031910\|Ga0306923_11916855	Not Available	604	Open in IMG/M
3300031941\|Ga0310912_11005651	Not Available	639	Open in IMG/M
3300031945\|Ga0310913_11178867	Not Available	534	Open in IMG/M
3300031946\|Ga0310910_10536165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	929	Open in IMG/M
3300032001\|Ga0306922_10933298	Not Available	899	Open in IMG/M
3300032001\|Ga0306922_10943403	Not Available	894	Open in IMG/M
3300032010\|Ga0318569_10564553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium deltaense → Agrobacterium deltaense Zutra 3/1	530	Open in IMG/M
3300032044\|Ga0318558_10162192	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300032063\|Ga0318504_10445207	Not Available	619	Open in IMG/M
3300032066\|Ga0318514_10544700	Not Available	618	Open in IMG/M
3300032076\|Ga0306924_10071676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3868	Open in IMG/M
3300032261\|Ga0306920_100770219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1414	Open in IMG/M
3300033289\|Ga0310914_10950238	Not Available	759	Open in IMG/M
3300033289\|Ga0310914_11129481	Not Available	685	Open in IMG/M
3300033290\|Ga0318519_10510871	Not Available	724	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.33%
Aquatic	Environmental → Aquatic	3.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.41%
Freshwater	Environmental → Aquatic → Freshwater	3.67%
Cave	Environmental → Terrestrial → Cave	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.24%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.75%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100735312	3300001545	Forest Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSVSSADVIVDFSRVEYI
Ga0062384_1004347011	3300004082	Bog Forest Soil	VDIGEKRQANILVLAPVGRIDNLTSAAFQARLLAAITSSAADVVVDLS
Ga0066677_100680831	3300005171	Soil	VDIGERRQANILVLAPIGRIDNLTSTEFQARLLAAVSSASTDVIVD
Ga0070710_103892021	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSYSSAD
Ga0070698_1017402511	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDIGERRQANILVLAPVGRIDNLTSGEFQTRLLAAVTFSSADVVIDFSG
Ga0066670_103859881	3300005560	Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSSSSADVIVDF
Ga0066705_106690721	3300005569	Soil	VDIGERRQANILVLAPIGRIDNLTSTEFQARLLAAVS
Ga0066656_106249331	3300006034	Soil	VDIGERRQANILVLAPIGRIDNLTSTDFQARLLAAVSSASTDVIVDFSRVEYI
Ga0070712_1017658472	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VEIGERRQTNILVLRPVGRIDNLTSAEFQARLLAAA
Ga0079220_109347491	3300006806	Agricultural Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVTSSG
Ga0134109_102051952	3300010320	Grasslands Soil	MEISERRLGSLVVLRPEGRIDNTTCAEFQARLLAIV
Ga0126372_124334421	3300010360	Tropical Forest Soil	VEIGERRQADILVLRPVGRIDNLTSAEFQARLLAAANSTTDDIVVDCSSVEYI
Ga0126378_115115292	3300010361	Tropical Forest Soil	VEIGESRQANLLVLRPVGRIDNFTSAEFQARLLAAVTSS
Ga0136449_1033159321	3300010379	Peatlands Soil	MSREAAVEIGERRQANILVLRPVGRIDDLTSAEFQSR
Ga0126383_117572591	3300010398	Tropical Forest Soil	VEIGERRQANTLVLQPVGRLDNLTSADFQARLLAAVTSATDDIVIDFSSV
Ga0137362_108056321	3300012205	Vadose Zone Soil	VEIGERRQSNILVLRPVGRIDNLTSAEFQARLLAAATSSP
Ga0137379_110164702	3300012209	Vadose Zone Soil	VDIGDRRQANILVLAPVGRIDNLTSGEFQTRLLAAV
Ga0137359_103623731	3300012923	Vadose Zone Soil	VEIGERRQSNILVLRPVGRIDNLTSAEFQARLLAAT
Ga0137359_108049302	3300012923	Vadose Zone Soil	VEIGERRQANILVLRPVGRIDNLTSAEFQARLLAAISSPGD
Ga0182024_104656881	3300014501	Permafrost	VEIAEKRDGNIVVLGPVGRIDNETSSSFQTRLLDSIG
Ga0182036_106180253	3300016270	Soil	VEIGERHVANNLVLQPVGRLDNLTSADFQARLLAAVTSSTEDIVIDFS
Ga0182036_108519901	3300016270	Soil	MLRQGVPVDIGERRQANVLVLAPVGRLDNLTSTAFQTRLLAAVTSGSADVVVDLSGV
Ga0182041_102679291	3300016294	Soil	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVGS
Ga0182033_100931191	3300016319	Soil	VEIGERRLANTLVLQPVGRLDNFTSADFQARLLAAVTSATDDIVIDFSS
Ga0182033_103111361	3300016319	Soil	MLRQGVPVDIGERRQANVLVLAPVGRLDNLTSAAFQTR
Ga0182033_121088181	3300016319	Soil	VEIGERRVANNLVLQPVGRLDNLTSAEFQARLLAAVTSSTEDI
Ga0182033_121175141	3300016319	Soil	MDIGERRQANILVLTPIGRIDNLTSADFQACLLAAVTSGGADVVV
Ga0182035_100019641	3300016341	Soil	MDIGERRQANILVLAPVGRIDNLTSAEFQTRLLAAVTSSSADVVIDF
Ga0182035_115175762	3300016341	Soil	MGQSVEIGEQREDGILVLRPVGRLNNDSSPDFQARLLAR
Ga0182034_117333581	3300016371	Soil	MDIGERRQANILVLTPIGRIDNLTSADFQACLLAAVTSGGADVVVDFSGVEYIS
Ga0182040_102704023	3300016387	Soil	VEIGERRRANILVLQPAGRIDNLTSAEFQARLLAAV
Ga0182040_103687983	3300016387	Soil	VEIGERHVANNLVLQPVGRLDNLTSADFQARLLAAVTSSTEDIVIDFSSIE
Ga0182037_112690271	3300016404	Soil	VEISERRQGNILVLRPVGRINDLTSTEFQARLLAAVTSATDIVVDCSSVEY
Ga0182037_120796232	3300016404	Soil	VEIGERRVANNLVLQPVGRLDNLTSADFQARLLAAVTS
Ga0182039_119177643	3300016422	Soil	VEIGERRQANILVLQPVGRIDNLTSAEFQARLLAAVTSS
Ga0182038_101007731	3300016445	Soil	VEIGERRQANILVLQPVGRVDNFTSAEFQTRLLAATNSTTD
Ga0182038_110967561	3300016445	Soil	VEIGERRQANTLVLQPVGRLDNLTSADFQARLVAA
Ga0187817_100612451	3300017955	Freshwater Sediment	VEIGERRQANILVLAPVGRLDNLTSAEFQTRLLAAVSSGSADV
Ga0066669_106593252	3300018482	Grasslands Soil	VNIGDSRVGDHLVLQPVGRLDTPTTAEFQARLLQPVTAGPDAEVG
Ga0066669_122750281	3300018482	Grasslands Soil	VDIGERRQANILVLAPIGRIDNLTSTEFQARLLAAVSSASTDVIVDFSRVE
Ga0210399_107083621	3300020581	Soil	VDIGERRQANILVLAPVGRLDNLTSAGFQARLLTAVTS
Ga0210401_109529301	3300020583	Soil	VDIGERRQANILVLAPVGRLDNLTSAGFQARLLTVVTSSSADV
Ga0210408_110286941	3300021178	Soil	VEIGERRQADILVLRPVGRIDNLTSAEFQARLLAAAASSRDDIVVDF
Ga0210384_116571121	3300021432	Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSSTS
Ga0187846_101914351	3300021476	Biofilm	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVGSSSAGVVVDFSGVEY
Ga0126371_116211181	3300021560	Tropical Forest Soil	VEIGERRQANIIVLRPVGRIDNLTSADFQARLLAAVTSSTDD
Ga0126371_126969132	3300021560	Tropical Forest Soil	VEIGERRQANILVLRPVGRIDNLTSAEFQTRLLAAASSTA
Ga0126371_131418732	3300021560	Tropical Forest Soil	VEIGERRYRDVLVLRPVGRIDNLTSAEFQARLLGAA
Ga0242658_10860782	3300022530	Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSSTSADVVVDFSGVEYISS
Ga0207664_103338151	3300025929	Agricultural Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVS
Ga0257161_11131092	3300026508	Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSSSSADVIVDFSRV
Ga0179587_107254042	3300026557	Vadose Zone Soil	VEIGERRQANILVLRPVGRIDNLTSAEFQARLLAAAT
Ga0207826_10605622	3300027680	Tropical Forest Soil	VEIGERRQANILVLRPVGRIDNLTSAEFQARLLAA
Ga0209328_100449601	3300027727	Forest Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAA
Ga0209448_100142323	3300027783	Bog Forest Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAT
Ga0209139_100525932	3300027795	Bog Forest Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSSSAADIVVDFSGVEYI
Ga0209488_102284773	3300027903	Vadose Zone Soil	VDIGERRQANILVLAPVGRIDNLTSGEFQTRLLAAVTSSSA
Ga0209526_104925581	3300028047	Forest Soil	VDIGERRQANILVLAPVGRIDNLTSTEFQARLLAAVSVS
Ga0137415_103310201	3300028536	Vadose Zone Soil	VDIGERRQANILVLAPVGRIDNLTSGEFQTRLLAAVTSSSADVVID
Ga0170824_1018612742	3300031231	Forest Soil	LDIGERRQTNILVLAPVGRIDNLTSTEFQARLLAAVSSSSADVIVDFS
Ga0318516_102832151	3300031543	Soil	VEIGERRQANMLVLAPVGRIDNLTSAGFQARLLAAVASNSADVVVDLSGVEYI
Ga0318541_101902301	3300031545	Soil	VDIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTSSSADVVIDLSG
Ga0318538_102173151	3300031546	Soil	VEIGERRQANILALRPVGRIDNLTSAEFQARLLAATTSG
Ga0318571_102524492	3300031549	Soil	MDIGERRQANILVLAPVGRIDNLTSAEFQTRLLAAVTSSSADVVID
Ga0318515_102855611	3300031572	Soil	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVGSSSAGVVVDFSGVE
Ga0310915_106634251	3300031573	Soil	VDIGERRQANILVLAPVGRIDNLTAAEFQARLLAAVTSSSADVVVDFSGVEYISS
Ga0318555_100775041	3300031640	Soil	VEIGERRQADILVLRPVGRIDNLTSAEFQARLLAA
Ga0318542_101254491	3300031668	Soil	IGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTSSSADVVID
Ga0318542_102585542	3300031668	Soil	VDIGERRQANILVLAPVGRIDNLTSAEFQTRLLAAVTSNSADVVID
Ga0318542_104772942	3300031668	Soil	VEIGERRQANMLVLAPVGRIDNLTSAGFQARLLAAVASNSADVVVDLSGVEYIYRAPV
Ga0318542_105032092	3300031668	Soil	VDIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTSSSADVVVDLSGVE
Ga0318572_107802601	3300031681	Soil	VDIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTSSSADVVID
Ga0306917_106196282	3300031719	Soil	VDIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTSGSADV
Ga0318501_100325893	3300031736	Soil	VDIGERRQANILVLAPVGRLDNLTSAAFQARLLAAVTSSPVDVVVDFSG
Ga0306918_102465553	3300031744	Soil	VEIGERRLANTLVLQPVGRLDNLTSADFHARLLAAV
Ga0306918_108239672	3300031744	Soil	VTGAAVDIGERRQANILVLAPVGRIDNLTAAEFQARLLAAVTSSSADVVVDFSGVEYISS
Ga0318494_101487043	3300031751	Soil	VEIGERRQANMLVLAPVGRIDNLTSAGFQARLLAAVASNSADVVV
Ga0318509_104095533	3300031768	Soil	VEIGERRLANTLVLRPVGRLDNLTSAEFQARLVAAVTSA
Ga0318509_105606422	3300031768	Soil	VTGAAVDIGERRQANILVLAPVGRIDNLTAAEFQARLLAAVTSSSADVVVDFSGVEYI
Ga0318521_100589083	3300031770	Soil	MDIGERRQANILVLAPVGRIDNLTSAEFQTRLLADVSRDALDEY
Ga0318543_101282731	3300031777	Soil	VDIGERRQANILVLAPVGRIDNLTSAEFQTRLLAAVTSNSADVVIDFS
Ga0318543_104149642	3300031777	Soil	VEIGERRQANILALRPVGRIDNLTSAEFQARLLAATTSGLGDIVVDFTAVE
Ga0318547_100591573	3300031781	Soil	VDIGERRQANILVLAPVGRLDNLTSAAFQARLLAAVTSSPVDVVVDFSGVEYI
Ga0318529_104270082	3300031792	Soil	VNIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTS
Ga0318557_102543852	3300031795	Soil	VDIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTSSS
Ga0318576_106214221	3300031796	Soil	VEIGERRQANTLVLQPVGRLDNLTSADFQARLLAAVTSGADDIVIDFSSV
Ga0310917_100588973	3300031833	Soil	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVGSSSADVVVDF
Ga0310917_104065701	3300031833	Soil	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVGSSSA
Ga0318511_106200561	3300031845	Soil	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVGSSSADVVVDFSGVEYI
Ga0318512_104889071	3300031846	Soil	VDIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTS
Ga0318536_104044561	3300031893	Soil	VDIGERRQANILVLAPVGRLDNLTSAGFQVRLLTAVTSGSADVVVDLSRVEYI
Ga0318522_101048851	3300031894	Soil	VDIGERRQANILVLAPVGRLDNLTSAGFQVRLLTAVTSGSADVVVDLS
Ga0318520_103362951	3300031897	Soil	VDIGERRQANILVLAPVGRIDNLTSAEFQTRLLAAVTSNSADV
Ga0306923_101701073	3300031910	Soil	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVG
Ga0306923_119168551	3300031910	Soil	VEIGERCQANLLVLRPVGRIDNLTSAEFQARLLAAVNSTTDDIV
Ga0310912_110056511	3300031941	Soil	VDIGERRQANILVLAPIGRIDNITSPEFQGRLLAAV
Ga0310913_111788671	3300031945	Soil	VEIGERRQANILVLQPAGRIDNLTSAEFQARLLAAVTSSTEDIVIDFSS
Ga0310910_105361651	3300031946	Soil	VEIGERRLANTLVLQPVGRLDNLTSADFHARLLAAVTSAADDIVIDFSSVEYI
Ga0306922_109332983	3300032001	Soil	VDIGERRQANILVLAPVGRIDNLTSAAFQARLLAAVGSSS
Ga0306922_109434032	3300032001	Soil	VEIGERRYGDVLVLRPVGRIDNLTSAEFQARLLGAAASG
Ga0318569_105645533	3300032010	Soil	VEIGERHVANNLVLQPVGRLDNITSAEFQARLLAAVTSS
Ga0318558_101621923	3300032044	Soil	VEIGERHVANNLVLQPVGRLDNLTSADFQARLLAAVTSSTEDIVIDFSSIEY
Ga0318504_104452071	3300032063	Soil	VDIGESRRANILVLAPVGRIDNLTSAGFQARLLAAVTSGSADVVVDLSGV
Ga0318514_105447001	3300032066	Soil	VEIGERRQANMLVLAPVGRIDNLTSAGFQARLLAAVTSNSADV
Ga0306924_100716761	3300032076	Soil	VTGAAVDIGERRQANILVLAPVGRIDNLTAAEFQARLLA
Ga0306920_1007702193	3300032261	Soil	VEIGESRQANLLVLRPVGRIDNFTSAEFQARLLAAANSTTDDIVVD
Ga0310914_109502381	3300033289	Soil	VEIGERRQANILVLQPAGRIDNLTSAEFQARLLAAVTSSTEDIVIDFS
Ga0310914_111294811	3300033289	Soil	VEIGERRQANTLVLRPVGRLDNLTSADFQARLLAAVTSAADDIVIDFSSVEYISS
Ga0318519_105108711	3300033290	Soil	VDIGERRQANILVLAPVGRLDNLTSAAFQARLLAAVTSSPVDVVVDFSGVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089232

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences