Basic Information | |
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Family ID | F089226 |
Family Type | Metagenome |
Number of Sequences | 109 |
Average Sequence Length | 40 residues |
Representative Sequence | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE |
Number of Associated Samples | 84 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 92.66 % |
% of genes near scaffold ends (potentially truncated) | 98.17 % |
% of genes from short scaffolds (< 2000 bps) | 97.25 % |
Associated GOLD sequencing projects | 79 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.19 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (56.881 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (48.624 % of family members) |
Environment Ontology (ENVO) | Unclassified (68.807 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (48.624 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 8.82% Coil/Unstructured: 91.18% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.19 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Watersheds Vadose Zone Soil Tropical Forest Soil Soil Soil Soil Hardwood Forest Soil Tropical Forest Soil Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Termite Gut Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0070699_1002917921 | 3300005518 | Corn, Switchgrass And Miscanthus Rhizosphere | VVPSYVFAGVGGYYASKQSGLGGVFRRDAADGSDWKHALSEI |
Ga0066654_108022052 | 3300005587 | Soil | VAPSYVFAGIGGYYASKQGGLAGVFRCATSGTDVALSRPY* |
Ga0066903_1012919671 | 3300005764 | Tropical Forest Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHAL |
Ga0066903_1088587062 | 3300005764 | Tropical Forest Soil | VVPSCVFAGLGGYYASKQSGLAGVFRRDAADGSDWKHALREIEAFTVFV |
Ga0075024_1003306801 | 3300006047 | Watersheds | VALSYVFAGVGGYYASKQGGLAGVFRCATDGTDWKHALSEIEAF |
Ga0070712_1020254801 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | VVPSYIFAGVGGYYASKQGGLAGVFRGAADGSDWKHALSEIEAF |
Ga0066653_103245633 | 3300006791 | Soil | VAPSYVFADIGGYYASKQGGLAGVFRCATSGTDVALSRPY* |
Ga0066660_111453882 | 3300006800 | Soil | VTLSYVFAGVGGYYASKQGGLAGVFRCAADGTDWKHPLNEI |
Ga0126380_105514541 | 3300010043 | Tropical Forest Soil | VSSSYVFAGVGGYYASKQGGLAGVFRCANDATDWKHALSEI |
Ga0126384_112744071 | 3300010046 | Tropical Forest Soil | VFAGLGGYYASKQSGLAGVFRRDAADGSDWKHALSE |
Ga0126373_108989622 | 3300010048 | Tropical Forest Soil | VASSYVFAGVGGYYASKQGGLAGVFRYATDGSDWKHALSEIE |
Ga0131853_108636703 | 3300010162 | Termite Gut | MAQSYIYAGVGGYYASKDQGDLAGVFRGALGEGWTHPLSEREAFTVCVHP |
Ga0126381_1013651071 | 3300010376 | Tropical Forest Soil | VFAGVGGYYASKQGGLAGVFRYATDGSDWKHALSEIEAFTVF |
Ga0137362_117736221 | 3300012205 | Vadose Zone Soil | VFAGVGGYYASKQSGLAGVFCRDAADGSDWKHALSEIEAFTV |
Ga0137377_101306151 | 3300012211 | Vadose Zone Soil | MARSYVFAGVGGYYGSKQSGLAGVFCCATDDTNWKHALS |
Ga0137386_109718302 | 3300012351 | Vadose Zone Soil | VFAGVGGYYASKQSGLAGVFRCATDDSNWKHALSEIEAF |
Ga0137361_111035401 | 3300012362 | Vadose Zone Soil | VFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEA |
Ga0137396_112463462 | 3300012918 | Vadose Zone Soil | VFAGVGGYYASKQGGLAGVFRCAANGTDWKHTLSEIEAFTVFLHPRDPNL |
Ga0126375_118506331 | 3300012948 | Tropical Forest Soil | VFTGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIEAF |
Ga0126369_100598023 | 3300012971 | Tropical Forest Soil | VCSAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIE |
Ga0126369_116964331 | 3300012971 | Tropical Forest Soil | MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALS |
Ga0132256_1030334351 | 3300015372 | Arabidopsis Rhizosphere | VAQSYVFAGVGGYYASTEKGGKAGVFRRAADQSSWD |
Ga0182041_107877381 | 3300016294 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHA |
Ga0182041_110742621 | 3300016294 | Soil | MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKH |
Ga0182041_111925403 | 3300016294 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHAL |
Ga0182033_118670392 | 3300016319 | Soil | VVPSYVFAGVGGYYASKQSGLAGVFRRDAADGSDWK |
Ga0182035_109260031 | 3300016341 | Soil | VAPSYVFAGVGGYYANKQGGLAGVFRRATDDTNWKHALSEIEV |
Ga0182032_118843142 | 3300016357 | Soil | MARSCVLAGVGGYYASKQGGLAGVFRRSAEGSEWKHALSEI |
Ga0182040_101549223 | 3300016387 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWK |
Ga0182040_102795354 | 3300016387 | Soil | VAPSDVFAGVGRYSASKQGGLAGVFRCAADGSDWKHALSEV |
Ga0182039_111703472 | 3300016422 | Soil | VSSSYVYAGVGGYYASKQGGLAGVFRCATDGTDWKHALSE |
Ga0182038_105812173 | 3300016445 | Soil | VAPSYVFAGVGGYYASKQGGLAGVFRCADATDWKHALSEIE |
Ga0187804_102086381 | 3300018006 | Freshwater Sediment | VALSYVFAGVGGYYASKQGGLAGVFRCATDGTDWKHALSE |
Ga0210403_111383231 | 3300020580 | Soil | VAPSYVFAGVGGYYASKQGGLAGVFRCATGGTDWKHALNEIETFTVF |
Ga0210404_103837472 | 3300021088 | Soil | MVPSYVFAGVGGYYASKQGGLAGVFRCAANGTDWKHALSEIEAFTVFL |
Ga0210386_109382631 | 3300021406 | Soil | VVPSYIFAGVGGYYASKQGGLAGVFRSAADGSDWKH |
Ga0126371_121854252 | 3300021560 | Tropical Forest Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRDADDSDWKHALSEI |
Ga0126371_136558422 | 3300021560 | Tropical Forest Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE |
Ga0207700_106001203 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | VALSYVFAAVGGYYASKQGGLAGVFRCATDGTDWKH |
Ga0209625_10243711 | 3300027635 | Forest Soil | VVPSYIFAGVGGYYASKQGGLAGVFRGAADGSDWKHAL |
Ga0209465_100769021 | 3300027874 | Tropical Forest Soil | VVSSCVFAGVGGYYASKQSGLAGVFRRAADDSDWKHALSEIEAF |
Ga0318541_101929501 | 3300031545 | Soil | VALSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIETFTSSSTRGI |
Ga0318541_105351851 | 3300031545 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIE |
Ga0318528_103714071 | 3300031561 | Soil | VVPSYVFTGVGGYYASKQGGLAGVFRRATDGTDWKHALS |
Ga0318573_102665501 | 3300031564 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKH |
Ga0310915_108231122 | 3300031573 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKH |
Ga0318542_106576081 | 3300031668 | Soil | VAPSYVFAGVGGYYASKQSGLAGVFRCAADGSDWK |
Ga0318574_106007551 | 3300031680 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHA |
Ga0318572_106079041 | 3300031681 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALS |
Ga0318560_104935422 | 3300031682 | Soil | VPWFPSCVFAGVGGYYASKQSGLAGVFRRAADGSDW |
Ga0307469_118845192 | 3300031720 | Hardwood Forest Soil | VVRSCVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSE |
Ga0318501_100995151 | 3300031736 | Soil | MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE |
Ga0306918_104630771 | 3300031744 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSEWKHALSEIEAFT |
Ga0318492_102450032 | 3300031748 | Soil | MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWK |
Ga0318494_105265081 | 3300031751 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALS |
Ga0318509_102822682 | 3300031768 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALSE |
Ga0318509_104083143 | 3300031768 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSE |
Ga0318521_108162942 | 3300031770 | Soil | VASSYVFAGVGGYYASKQGGLAGVFRCATDGTDWKHALSDIEA |
Ga0318547_102167961 | 3300031781 | Soil | VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSE |
Ga0318547_102307923 | 3300031781 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADDSDWK |
Ga0318503_101175871 | 3300031794 | Soil | VVPSCVFAGIGGYYASKQSGLAGVFRRAADGSDWKHA |
Ga0318557_100201861 | 3300031795 | Soil | MVPSFVCAGVGGYYASKQSGLAGVFRRAADGSDWKHAL |
Ga0318576_105731741 | 3300031796 | Soil | VASSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIKTFIPI |
Ga0318523_102741452 | 3300031798 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAANGSDWKHALSE |
Ga0318568_108442882 | 3300031819 | Soil | VALSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIETFTSSSTRGIPISSSRVPLMASI |
Ga0318568_108881702 | 3300031819 | Soil | VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEVETFT |
Ga0307473_115138801 | 3300031820 | Hardwood Forest Soil | VVRSCVFAGVGGYYTSKQSGLAGVFRRAADDSDWKHALSEIEAF |
Ga0318512_105746792 | 3300031846 | Soil | VVPSYVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHA |
Ga0306919_101485183 | 3300031879 | Soil | MARSCVLAGVGGYYASKQGGLAGVFRRSLEGSEWKHVLSEIEAFTV |
Ga0306919_105075653 | 3300031879 | Soil | VTQSYVFAGVGGYYASKQGGLAGVFRCSTDSGDWKHALSEVEAF |
Ga0306919_111597613 | 3300031879 | Soil | VAPSHVFAGVGGYYANKQDGLAGVFRCATDDTNWKHALSEIEVF |
Ga0318544_101587402 | 3300031880 | Soil | VASSYVFAGVGGYYASKQGGLAGVFRCAIDGTDWK |
Ga0318536_102777041 | 3300031893 | Soil | VALSYVFAGVGGYYASKQGGLAGVFRYATDGTDWKHALSEIETFT |
Ga0318522_101780772 | 3300031894 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSEWK |
Ga0318551_103029522 | 3300031896 | Soil | MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDNM |
Ga0318551_107668201 | 3300031896 | Soil | VVSAHVFAGVGGYYASKQSGLAGVFRRATNGSDWK |
Ga0306923_108698701 | 3300031910 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKLALSEIEAFTV |
Ga0306923_111285013 | 3300031910 | Soil | VSPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHAL |
Ga0306923_115178732 | 3300031910 | Soil | VSPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALS |
Ga0306921_106672173 | 3300031912 | Soil | VVASCVFAGVGGYYASKQSGLAGVFRRAADDSDWKH |
Ga0306921_108637311 | 3300031912 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSKIE |
Ga0306921_116831272 | 3300031912 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEIEAF |
Ga0310912_105771491 | 3300031941 | Soil | VVPSYVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEAFTVF |
Ga0310912_108629701 | 3300031941 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALSEIEAF |
Ga0310912_114027142 | 3300031941 | Soil | VARSYVFAGVGGYYASKQGGLAGVFRCAADGSDWK |
Ga0310916_108820341 | 3300031942 | Soil | VAPSCVFAGVGGYYANKQGGFAGVFRRATDDTNWKHALSE |
Ga0310916_108837251 | 3300031942 | Soil | VAPSYVFAGVGGYYASKQGGLAGVFRCAAEGTDWKHALSEVETFTVFV |
Ga0310913_110081611 | 3300031945 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEAFTV |
Ga0310910_109365652 | 3300031946 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWKHALSEI |
Ga0310909_104391692 | 3300031947 | Soil | MVPSFVFAGVGGYYASKQSGLAGVFRRAADGSDWKHAL |
Ga0306926_115695431 | 3300031954 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADDSDWKH |
Ga0318507_103146901 | 3300032025 | Soil | VASSYVFAGVGGYYASKQGGLAGVFRCAIDGTDWKH |
Ga0310911_101759981 | 3300032035 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSEWKH |
Ga0318556_104894601 | 3300032043 | Soil | VVPSCVFAGVGGYYASKQTGLAGVFRRAADGSDWKHT |
Ga0318558_100538081 | 3300032044 | Soil | VVSSCVLAGVGGYYASNQGGLAGVFRRGVDDADWK |
Ga0318532_101064583 | 3300032051 | Soil | VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEVET |
Ga0318532_101715991 | 3300032051 | Soil | VVPSCVFAGVGGYYASKQTGLAGVFRRAADGSDWKHTLSE |
Ga0318533_102262082 | 3300032059 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSDWKHALSEIEAFT |
Ga0318504_101807041 | 3300032063 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRTADGSDWR |
Ga0306924_104328992 | 3300032076 | Soil | VASSYVFAGVGGYYAGKQDGLAGVFCRATDGTDWKHALSDIEVF |
Ga0318525_102510751 | 3300032089 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWEHA |
Ga0318525_104858371 | 3300032089 | Soil | MVPSCVFAGVGGYYASKQSGLAGVFRRAADGSDWK |
Ga0318540_102076011 | 3300032094 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRAADGRDWKHALSEIEP |
Ga0307471_1011366251 | 3300032180 | Hardwood Forest Soil | VTQSYVFAGVGGYYASKQGGLAGVFRCSTNSGDWKHA |
Ga0306920_1006030293 | 3300032261 | Soil | VVPSCVFAGVGGYYASKQSGLAGVFRRDAADGSDW |
Ga0306920_1028398153 | 3300032261 | Soil | VASSYVFAGVGGYYAIKQGGLAGVFRRATDGTDWKYALSDIE |
Ga0306920_1031105881 | 3300032261 | Soil | VAPSYVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEV |
Ga0310914_108516233 | 3300033289 | Soil | VVPSCVFAGIGGYYASKQSGLAGVFRRAADGSDWK |
Ga0310914_110544471 | 3300033289 | Soil | VAPSDVFAGVGGYYASKQGGLAGVFRCAADGSDWKHALSEVETFTV |
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