Basic Information | |
---|---|
Family ID | F089146 |
Family Type | Metagenome |
Number of Sequences | 109 |
Average Sequence Length | 41 residues |
Representative Sequence | MTEPVRVGELLPGVLAEVVDRAGHGYSRWAELVAQAGYC |
Number of Associated Samples | 66 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 97.06 % |
% of genes near scaffold ends (potentially truncated) | 88.99 % |
% of genes from short scaffolds (< 2000 bps) | 87.16 % |
Associated GOLD sequencing projects | 63 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.49 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (85.321 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (26.605 % of family members) |
Environment Ontology (ENVO) | Unclassified (30.275 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (41.284 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 43.28% β-sheet: 0.00% Coil/Unstructured: 56.72% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.49 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Groundwater Sediment Soil Soil Serpentine Soil Soil Sub-Biocrust Soil Soil Groundwater Sand Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere Agave Agave |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI10216J12902_1064352791 | 3300000956 | Soil | MSDPTPVGELLPEVLAEVIDRAGPGYARWAELVAQAGYCHHPI |
JGI10216J12902_1070057482 | 3300000956 | Soil | MTEPVRVGELLPGVLAEVVDRAGNGYQRWAELVAQAGYCH |
Ga0066809_102394872 | 3300005168 | Soil | MTEPTRVGRVLPEVLAEVIDRAGPDYDRWMELVAQTGYCAHPV |
Ga0081538_100387702 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MTAPVRVGEVLPAVVAEAIARAGHGDDRWMEVAATGSCAHPVRTATVVPVPL* |
Ga0081538_102919031 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MTDPVRVGELVPGVLGEVVDRAGHGYERWAELVAQAGYCHHPIRL |
Ga0075417_100447604 | 3300006049 | Populus Rhizosphere | MTDPVRVGELLPGVLAEVVDRAGHGYERWAEQVAATGYCTHPVRLRG |
Ga0075427_100331811 | 3300006194 | Populus Rhizosphere | MTEPTRVGEVLPGVLAEVIERAGRGYDRWAELVAQAGYCHHPIRLA |
Ga0075422_103106782 | 3300006196 | Populus Rhizosphere | MTEPTRVGEVLPGVLAEVIERAGRGYDRWAELVAQ |
Ga0075430_1005278821 | 3300006846 | Populus Rhizosphere | MSEPVQVGELLPGVLQEVIERAGPGYERWAEQVAA |
Ga0075430_1016642131 | 3300006846 | Populus Rhizosphere | MTDPVRVSELLPGVLGEVVDRAGHGYERWAELVAQAGYC |
Ga0075420_1001095764 | 3300006853 | Populus Rhizosphere | MTDPVRVGELLPSVLGEVVDRAGAGYERWMELVAQAGYCHHPIRLA |
Ga0075424_1001846331 | 3300006904 | Populus Rhizosphere | MTEPVLVGELLPGVLQEVIDRAGPGYDRWAEQVAATGYCAHPVRLRAGSSTPTLRPG |
Ga0075424_1007327871 | 3300006904 | Populus Rhizosphere | MTDPSRVGELLPGVLAEVVDRAGHGYQRWVELVAQAGYCHHPIRLA |
Ga0075419_102501621 | 3300006969 | Populus Rhizosphere | MTDPVRVGELLPGVLAEVVDRAGHGYARWAEQVAATGYCAH |
Ga0075418_108337702 | 3300009100 | Populus Rhizosphere | MTEPVRVGALLPGVLGELVDRAGDGYGRWMELVAQAGYC |
Ga0114129_102836994 | 3300009147 | Populus Rhizosphere | MTEPVPVGELLPAVVAEAIERAGPGYDRWAEQVAATG* |
Ga0114129_125440471 | 3300009147 | Populus Rhizosphere | MSEPALVGELLPGVLQEVIARAGPGYDRWAEQVAATGYCAHP |
Ga0111538_122594672 | 3300009156 | Populus Rhizosphere | MTEPVRVGELLPGVLGEVVERAGHGYARWAELVAQA |
Ga0075423_101465715 | 3300009162 | Populus Rhizosphere | MTEPVLVGELLPGVLQEVIDRAGPGYDRWAEQVAATGYCAHPVRLRAGSSTPTLRPGRSARS |
Ga0126307_105374801 | 3300009789 | Serpentine Soil | MTDPVRVGELLPAVVAELVDRAGHGYDRWAELVAQA |
Ga0126307_106191192 | 3300009789 | Serpentine Soil | MSEPTQVGEVLPGVLAEVVDRAGHGYDRWAELVA* |
Ga0105076_11008642 | 3300009816 | Groundwater Sand | MSDPVQVGELLPDVLQEVVQRAGHGYDRWAELVAQAGYCH |
Ga0126313_100188447 | 3300009840 | Serpentine Soil | MTEPSLVGELLPGVLQEVIDRAGPSYERWAEQVAATGY |
Ga0126313_111008241 | 3300009840 | Serpentine Soil | MSEPMPVGAVLPGVLAEVVDRAGAGYDRWMELVAQAGYCHHPIR |
Ga0126313_112626992 | 3300009840 | Serpentine Soil | MNEPARVGELLPGVLGELVERAGHGYDRWAELVAQAGY |
Ga0126313_113223931 | 3300009840 | Serpentine Soil | MSEPVRVGELLPGVLGEVVDRAGPGYARWMELVAQAG |
Ga0126313_114559471 | 3300009840 | Serpentine Soil | MTDPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGYCVHPVRLRGTV |
Ga0126312_114939662 | 3300010041 | Serpentine Soil | MTDPVRVGELLPGVLTEVVDRAGNGYERWAEQVAATGYCA |
Ga0126314_103495312 | 3300010042 | Serpentine Soil | VTGPVRVGELVPGVLGEVVERAGHGYDRWAELVAQAG* |
Ga0126314_103820151 | 3300010042 | Serpentine Soil | MTEPVLVGEVLPGVVAEAIARAGPGYDRWMEQVAATGY |
Ga0126314_104503573 | 3300010042 | Serpentine Soil | MTEPVRVGEVLPEVVAEAIARAGPGYDRWMEQVAQTG |
Ga0126314_110402741 | 3300010042 | Serpentine Soil | MSQPVQVGELLPGVVAEAIARAGPGYDRWAEQVAATGYCAHP |
Ga0126314_111280692 | 3300010042 | Serpentine Soil | MTEPVRVGEVLPEVVAEAIARAGPGYDRWMEQVAQTGY |
Ga0126310_110685602 | 3300010044 | Serpentine Soil | MTEPTRVGDVLPAVLAEVVDRAGAGYERWMELVAQ |
Ga0126310_113089471 | 3300010044 | Serpentine Soil | MTEPERVGELLPGVLGEVVDRAGHGYQRWAELVAQAGYCHHPIR |
Ga0126306_108017972 | 3300010166 | Serpentine Soil | MRVGDVLPEVLAEVVDRAGHGYDRWRELVAQAGYCHHPI |
Ga0126306_111831651 | 3300010166 | Serpentine Soil | MIEPVRVGELLPGVLDEVVDRAGHGYQRWAELVAQAGYCHHPIRL |
Ga0184608_101129633 | 3300018028 | Groundwater Sediment | MTGPVRVGEVLPEVVAEAIARAGPDYDRWMELVAQKGYCAHPVRL |
Ga0184617_10971052 | 3300018066 | Groundwater Sediment | MSEPARVGELLPGVPGEVVERAGHGYERWAELVAQAGYCHHP |
Ga0184625_101876893 | 3300018081 | Groundwater Sediment | VTEPVRVGELLPGVIGEVVDRAGHGYDRWMELVAQAGYCHHPIRL |
Ga0184625_102034842 | 3300018081 | Groundwater Sediment | MTEPVRVGELLPDVLGELVERAGHGYERWAELVAQAGYCH |
Ga0190268_117535861 | 3300018466 | Soil | MSEPMAVGELLPGVLQEVIDRAGAGYERWAEQVAATGYCAHPVRLRGR |
Ga0193739_11743512 | 3300020003 | Soil | MTEPIQVGELLPGVVAEAIARAGPGYDRWMEQVAATGYCTHPVRLRG |
Ga0209574_103634162 | 3300027809 | Agave | VSEPVRVGELLPGVVGELVERAGHGYERWAELVAQAGYCHHP |
Ga0207428_101942101 | 3300027907 | Populus Rhizosphere | MTEPVRVGELLPGVLAEVVDRAGHGYSRWAELVAQAGYC |
Ga0209382_115738591 | 3300027909 | Populus Rhizosphere | MSEPVLVGELLPGVLQEVIERAGPGYERWAEQVAATGYCAH |
Ga0247818_103917341 | 3300028589 | Soil | MTEPTRVGELLPGVLGEVIDRAGHGYERWATSSAHRS |
Ga0247821_103455221 | 3300028596 | Soil | MTEPVRVGELLPGVLGEVVDRAGHGYDRWAELVAQA |
Ga0307291_10040041 | 3300028707 | Soil | MSEPARVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYC |
Ga0307295_101141892 | 3300028708 | Soil | MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGYCTH |
Ga0307301_101540831 | 3300028719 | Soil | VTDPARVGELLPGVLGEVVDRAGQGYDRWAELVAQAGYC |
Ga0307301_103046311 | 3300028719 | Soil | MSDPVRVGELVPGVLGEVVERAGHGYDRWAELVAQAGYCH |
Ga0307315_103120421 | 3300028721 | Soil | MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGYCTHP |
Ga0307319_101446242 | 3300028722 | Soil | MIEPVRVGEVLPGVLAEVVERAGRGYDRWAELVAQAGY |
Ga0307319_102056462 | 3300028722 | Soil | MTEPVRVGELLPDVLGELVERAGHGYERWAELVAQAGYCHHPIRLAG |
Ga0307318_102344901 | 3300028744 | Soil | MEPIQVGELLPGVLQEVIDRAGPGYERWAEQVAATGYCAHPVRLR |
Ga0307297_103063542 | 3300028754 | Soil | VTEPTRVGELLPGVLGEVVDRAGHGYDRWAELVAQA |
Ga0307320_101504401 | 3300028771 | Soil | MTDPVRVGELLPGVLAEVVDRAGHGYDRWAEQVAATGYCTHPVRLRG |
Ga0307290_102652231 | 3300028791 | Soil | MSEPVGVGELLPGVLGEVVDRAGPGYDRWMELVAQ |
Ga0307287_100778322 | 3300028796 | Soil | MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGY |
Ga0307287_100898431 | 3300028796 | Soil | MTEPVQVGELLPGVLGEVVERAGHGYERWAELVAQAGY |
Ga0307287_101102302 | 3300028796 | Soil | MTEPVRVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYCHHPIRLA |
Ga0307284_102525682 | 3300028799 | Soil | MTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATG |
Ga0307305_105410962 | 3300028807 | Soil | MTEPTRVGELVLGVLGEVVERAGHGYERWAELVAQAGYCHHPIR |
Ga0307294_102849041 | 3300028810 | Soil | MTDPVGVGELLPGVLAEVVDRAGHGYQRWAELVAQAGY |
Ga0307302_100228984 | 3300028814 | Soil | MSEPVLVGELLPEVVAEAIARAGPGYDRWMEQVTAT |
Ga0307310_106616621 | 3300028824 | Soil | VTEPTRVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYCHHPIRLAG |
Ga0307300_101917052 | 3300028880 | Soil | MSEPARVGELLPGVPGEVVERAGHGYERWAELVAQA |
Ga0307277_104154141 | 3300028881 | Soil | MTEPVRVGELLPGVLGEVVDRAGHGYERWAELVAQVGYCH |
Ga0307304_102390272 | 3300028885 | Soil | MTDPVRVGELLPGVLAEVVDRAGHGYDRWAEQVAATGYCTHPVGLRG |
Ga0247827_109567171 | 3300028889 | Soil | VTEPVRVGELLPGVIGEVVDRAGHGYERWTELVAQAGYCHHPI |
Ga0268259_101028881 | 3300030499 | Agave | MTEPIRVGEALPGVLAEVVDRAGHGYERWAELVAQAG |
Ga0268259_101951122 | 3300030499 | Agave | VSEPIQVGELLPGVLQEVIDRAGPDYDRWAEQVAATGYCAHPVR |
Ga0268253_102653111 | 3300030514 | Agave | VSEPVRVGELLPGVVGELVERAGHGYERWAELVAQAGYCHHPIRL |
Ga0307408_1020397041 | 3300031548 | Rhizosphere | MTEPVRVGELLPGVLGELVDRAGHGYERWAELVAQAG |
Ga0307405_102365301 | 3300031731 | Rhizosphere | VTEPVQVGELLPGVLGEVVDRAGHGYERWAELVAQAGYCHHP |
Ga0307405_103977291 | 3300031731 | Rhizosphere | MTEPARVGEMLPGVLAEVVDRAGHGYDRWAELVAQAGYCHH |
Ga0307405_113359662 | 3300031731 | Rhizosphere | MSQPVQVGELLPEVLAEVIQRAGNRYDRWAEQVAAT |
Ga0307413_104949601 | 3300031824 | Rhizosphere | MSEPMPVGAVLPGVLAEVVDRAGAGYDRWMELVAQAGFCHHPIR |
Ga0307413_108774671 | 3300031824 | Rhizosphere | VTEPVQVGELLPGVLGEVVDRAGVGYDRWAELVAQAGYCHHPI |
Ga0307413_116081261 | 3300031824 | Rhizosphere | MTEPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGYCVH |
Ga0307413_121179561 | 3300031824 | Rhizosphere | MTDPVRVGELLPDVLAEVIDRAGHGYERWAELVAQAGYCH |
Ga0307410_104035081 | 3300031852 | Rhizosphere | MSEPIQVGELVPGVLGELVDRAGAGYARWAELVAQAGYCHHPIRLA |
Ga0307406_105629092 | 3300031901 | Rhizosphere | MTEPSLVGELLPGVLQEVIDRAGPSYERWAEQVAATGYCAH |
Ga0307406_117018321 | 3300031901 | Rhizosphere | MTEPARVGELLPEVLQEVVQRAGHGYDRWAELVAQAGYCHH |
Ga0307407_101046911 | 3300031903 | Rhizosphere | MTEPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGY |
Ga0307407_102033303 | 3300031903 | Rhizosphere | MSEPALVAELLPGVLQEVIDRAGPGYERWAEQVAATGYCTHPVR |
Ga0307407_107391143 | 3300031903 | Rhizosphere | MTDPTRVGELLPSVLGEVVERAGHGYERWAELVAQAGY |
Ga0307407_117001331 | 3300031903 | Rhizosphere | MTDPVLIGELLPEVVAEAIARAGPGYDRWAEQVAATG |
Ga0308175_1028324882 | 3300031938 | Soil | MSEPARVGEVVPGVLAEVIGRAGHGYARWAELVAQAGY |
Ga0307409_1002058593 | 3300031995 | Rhizosphere | MSEPAQVGDVLPGVLAEVIDRAGHGYARWAELVAQA |
Ga0307409_1012389971 | 3300031995 | Rhizosphere | MTDPARVGDVLPGVLAEVVDRAGHGYDRWAELVAQAG |
Ga0307416_1002249243 | 3300032002 | Rhizosphere | MSEPARVGELLPGVLGEVVDRAGHGYERWAELVAQAGYCHHPI |
Ga0307416_1006064981 | 3300032002 | Rhizosphere | MTDPVRVGELLPGVLAEVVDRAGHGYERWAELVAQAGYCHHPIRLA |
Ga0307416_1008631821 | 3300032002 | Rhizosphere | MTEPVRVGELLPGVVAELVERAEHGYDRWAELVAQAGYCHHPIR |
Ga0307416_1013969112 | 3300032002 | Rhizosphere | MSQPVQVGELLPGVVAEAIARAGPGYDRWAEQVAATGY |
Ga0307416_1015065532 | 3300032002 | Rhizosphere | MTQPTRVGELLPGVLGEVVDRAGHGYQRWAELVAQAGYCHHPIR |
Ga0307416_1028052941 | 3300032002 | Rhizosphere | VSGPVLVGELLPKVLAEVVQRGGPGYGRWAELVAQAGYCHHPI |
Ga0307416_1028056121 | 3300032002 | Rhizosphere | MTEPVRVGEVLPEVIAEAIARAGPGYARWMELVAQTGYCTH |
Ga0307416_1033647942 | 3300032002 | Rhizosphere | VTEPTRVRELLPGVLEEVVDRAAHSYDRWAELVAQ |
Ga0307415_1000806214 | 3300032126 | Rhizosphere | MSEPAQVGDVLPGVLAEVIDRAGHGYARWADLVAQAG |
Ga0307415_1012543861 | 3300032126 | Rhizosphere | MSDPALVGDVLPGVVAEAIARAGPGYDRWMEQVAATGYCTH |
Ga0307415_1018165482 | 3300032126 | Rhizosphere | MSEPVAVGELLPGVLQEVIDRAGPGYDRWAEQVAATG |
Ga0307415_1021964471 | 3300032126 | Rhizosphere | VTGPVRVGELLPGVVAELVERAGHGYDRWAELVAQAGYCHHPIRLAG |
Ga0268251_102708661 | 3300032159 | Agave | MSAPALVAELLPGVLQEVIDRAGPGYDRWAEQIAAT |
Ga0247829_103728342 | 3300033550 | Soil | MNEPTRVGDVLPGVLAEVVDRAGRGYDRWAALALPS |
Ga0334913_063829_671_775 | 3300034172 | Sub-Biocrust Soil | MTEPTRVGELLPGVLQEVIDRAGPGYDRWAEQVAA |
Ga0334932_015393_2_139 | 3300034174 | Sub-Biocrust Soil | VREPIQVGELLPGVLQEVIDRAGPGYEQWAEQVAATGYCAHPVRLR |
Ga0334932_051131_2_112 | 3300034174 | Sub-Biocrust Soil | MTDPVRVGELLPGVLAEVVDRAGYGYDRWAELVAQAG |
⦗Top⦘ |