NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F089146

Metagenome Family F089146

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089146
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 41 residues
Representative Sequence MTEPVRVGELLPGVLAEVVDRAGHGYSRWAELVAQAGYC
Number of Associated Samples 66
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.06 %
% of genes near scaffold ends (potentially truncated) 88.99 %
% of genes from short scaffolds (< 2000 bps) 87.16 %
Associated GOLD sequencing projects 63
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (85.321 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere
(26.605 % of family members)
Environment Ontology (ENVO) Unclassified
(30.275 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.284 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1JGI10216J12902_1064352791
2JGI10216J12902_1070057482
3Ga0066809_102394872
4Ga0081538_100387702
5Ga0081538_102919031
6Ga0075417_100447604
7Ga0075427_100331811
8Ga0075422_103106782
9Ga0075430_1005278821
10Ga0075430_1016642131
11Ga0075420_1001095764
12Ga0075424_1001846331
13Ga0075424_1007327871
14Ga0075419_102501621
15Ga0075418_108337702
16Ga0114129_102836994
17Ga0114129_125440471
18Ga0111538_122594672
19Ga0075423_101465715
20Ga0126307_105374801
21Ga0126307_106191192
22Ga0105076_11008642
23Ga0126313_100188447
24Ga0126313_111008241
25Ga0126313_112626992
26Ga0126313_113223931
27Ga0126313_114559471
28Ga0126312_114939662
29Ga0126314_103495312
30Ga0126314_103820151
31Ga0126314_104503573
32Ga0126314_110402741
33Ga0126314_111280692
34Ga0126310_110685602
35Ga0126310_113089471
36Ga0126306_108017972
37Ga0126306_111831651
38Ga0184608_101129633
39Ga0184617_10971052
40Ga0184625_101876893
41Ga0184625_102034842
42Ga0190268_117535861
43Ga0193739_11743512
44Ga0209574_103634162
45Ga0207428_101942101
46Ga0209382_115738591
47Ga0247818_103917341
48Ga0247821_103455221
49Ga0307291_10040041
50Ga0307295_101141892
51Ga0307301_101540831
52Ga0307301_103046311
53Ga0307315_103120421
54Ga0307319_101446242
55Ga0307319_102056462
56Ga0307318_102344901
57Ga0307297_103063542
58Ga0307320_101504401
59Ga0307290_102652231
60Ga0307287_100778322
61Ga0307287_100898431
62Ga0307287_101102302
63Ga0307284_102525682
64Ga0307305_105410962
65Ga0307294_102849041
66Ga0307302_100228984
67Ga0307310_106616621
68Ga0307300_101917052
69Ga0307277_104154141
70Ga0307304_102390272
71Ga0247827_109567171
72Ga0268259_101028881
73Ga0268259_101951122
74Ga0268253_102653111
75Ga0307408_1020397041
76Ga0307405_102365301
77Ga0307405_103977291
78Ga0307405_113359662
79Ga0307413_104949601
80Ga0307413_108774671
81Ga0307413_116081261
82Ga0307413_121179561
83Ga0307410_104035081
84Ga0307406_105629092
85Ga0307406_117018321
86Ga0307407_101046911
87Ga0307407_102033303
88Ga0307407_107391143
89Ga0307407_117001331
90Ga0308175_1028324882
91Ga0307409_1002058593
92Ga0307409_1012389971
93Ga0307416_1002249243
94Ga0307416_1006064981
95Ga0307416_1008631821
96Ga0307416_1013969112
97Ga0307416_1015065532
98Ga0307416_1028052941
99Ga0307416_1028056121
100Ga0307416_1033647942
101Ga0307415_1000806214
102Ga0307415_1012543861
103Ga0307415_1018165482
104Ga0307415_1021964471
105Ga0268251_102708661
106Ga0247829_103728342
107Ga0334913_063829_671_775
108Ga0334932_015393_2_139
109Ga0334932_051131_2_112
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 43.28%    β-sheet: 0.00%    Coil/Unstructured: 56.72%
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Variant

5101520253035MTEPVRVGELLPGVLAEVVDRAGHGYSRWAELVAQAGYCSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
86.2%13.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Soil
Serpentine Soil
Soil
Sub-Biocrust Soil
Soil
Groundwater Sand
Tabebuia Heterophylla Rhizosphere
Populus Rhizosphere
Rhizosphere
Agave
Agave
3.7%22.0%15.6%4.6%14.7%26.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI10216J12902_10643527913300000956SoilMSDPTPVGELLPEVLAEVIDRAGPGYARWAELVAQAGYCHHPI
JGI10216J12902_10700574823300000956SoilMTEPVRVGELLPGVLAEVVDRAGNGYQRWAELVAQAGYCH
Ga0066809_1023948723300005168SoilMTEPTRVGRVLPEVLAEVIDRAGPDYDRWMELVAQTGYCAHPV
Ga0081538_1003877023300005981Tabebuia Heterophylla RhizosphereMTAPVRVGEVLPAVVAEAIARAGHGDDRWMEVAATGSCAHPVRTATVVPVPL*
Ga0081538_1029190313300005981Tabebuia Heterophylla RhizosphereMTDPVRVGELVPGVLGEVVDRAGHGYERWAELVAQAGYCHHPIRL
Ga0075417_1004476043300006049Populus RhizosphereMTDPVRVGELLPGVLAEVVDRAGHGYERWAEQVAATGYCTHPVRLRG
Ga0075427_1003318113300006194Populus RhizosphereMTEPTRVGEVLPGVLAEVIERAGRGYDRWAELVAQAGYCHHPIRLA
Ga0075422_1031067823300006196Populus RhizosphereMTEPTRVGEVLPGVLAEVIERAGRGYDRWAELVAQ
Ga0075430_10052788213300006846Populus RhizosphereMSEPVQVGELLPGVLQEVIERAGPGYERWAEQVAA
Ga0075430_10166421313300006846Populus RhizosphereMTDPVRVSELLPGVLGEVVDRAGHGYERWAELVAQAGYC
Ga0075420_10010957643300006853Populus RhizosphereMTDPVRVGELLPSVLGEVVDRAGAGYERWMELVAQAGYCHHPIRLA
Ga0075424_10018463313300006904Populus RhizosphereMTEPVLVGELLPGVLQEVIDRAGPGYDRWAEQVAATGYCAHPVRLRAGSSTPTLRPG
Ga0075424_10073278713300006904Populus RhizosphereMTDPSRVGELLPGVLAEVVDRAGHGYQRWVELVAQAGYCHHPIRLA
Ga0075419_1025016213300006969Populus RhizosphereMTDPVRVGELLPGVLAEVVDRAGHGYARWAEQVAATGYCAH
Ga0075418_1083377023300009100Populus RhizosphereMTEPVRVGALLPGVLGELVDRAGDGYGRWMELVAQAGYC
Ga0114129_1028369943300009147Populus RhizosphereMTEPVPVGELLPAVVAEAIERAGPGYDRWAEQVAATG*
Ga0114129_1254404713300009147Populus RhizosphereMSEPALVGELLPGVLQEVIARAGPGYDRWAEQVAATGYCAHP
Ga0111538_1225946723300009156Populus RhizosphereMTEPVRVGELLPGVLGEVVERAGHGYARWAELVAQA
Ga0075423_1014657153300009162Populus RhizosphereMTEPVLVGELLPGVLQEVIDRAGPGYDRWAEQVAATGYCAHPVRLRAGSSTPTLRPGRSARS
Ga0126307_1053748013300009789Serpentine SoilMTDPVRVGELLPAVVAELVDRAGHGYDRWAELVAQA
Ga0126307_1061911923300009789Serpentine SoilMSEPTQVGEVLPGVLAEVVDRAGHGYDRWAELVA*
Ga0105076_110086423300009816Groundwater SandMSDPVQVGELLPDVLQEVVQRAGHGYDRWAELVAQAGYCH
Ga0126313_1001884473300009840Serpentine SoilMTEPSLVGELLPGVLQEVIDRAGPSYERWAEQVAATGY
Ga0126313_1110082413300009840Serpentine SoilMSEPMPVGAVLPGVLAEVVDRAGAGYDRWMELVAQAGYCHHPIR
Ga0126313_1126269923300009840Serpentine SoilMNEPARVGELLPGVLGELVERAGHGYDRWAELVAQAGY
Ga0126313_1132239313300009840Serpentine SoilMSEPVRVGELLPGVLGEVVDRAGPGYARWMELVAQAG
Ga0126313_1145594713300009840Serpentine SoilMTDPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGYCVHPVRLRGTV
Ga0126312_1149396623300010041Serpentine SoilMTDPVRVGELLPGVLTEVVDRAGNGYERWAEQVAATGYCA
Ga0126314_1034953123300010042Serpentine SoilVTGPVRVGELVPGVLGEVVERAGHGYDRWAELVAQAG*
Ga0126314_1038201513300010042Serpentine SoilMTEPVLVGEVLPGVVAEAIARAGPGYDRWMEQVAATGY
Ga0126314_1045035733300010042Serpentine SoilMTEPVRVGEVLPEVVAEAIARAGPGYDRWMEQVAQTG
Ga0126314_1104027413300010042Serpentine SoilMSQPVQVGELLPGVVAEAIARAGPGYDRWAEQVAATGYCAHP
Ga0126314_1112806923300010042Serpentine SoilMTEPVRVGEVLPEVVAEAIARAGPGYDRWMEQVAQTGY
Ga0126310_1106856023300010044Serpentine SoilMTEPTRVGDVLPAVLAEVVDRAGAGYERWMELVAQ
Ga0126310_1130894713300010044Serpentine SoilMTEPERVGELLPGVLGEVVDRAGHGYQRWAELVAQAGYCHHPIR
Ga0126306_1080179723300010166Serpentine SoilMRVGDVLPEVLAEVVDRAGHGYDRWRELVAQAGYCHHPI
Ga0126306_1118316513300010166Serpentine SoilMIEPVRVGELLPGVLDEVVDRAGHGYQRWAELVAQAGYCHHPIRL
Ga0184608_1011296333300018028Groundwater SedimentMTGPVRVGEVLPEVVAEAIARAGPDYDRWMELVAQKGYCAHPVRL
Ga0184617_109710523300018066Groundwater SedimentMSEPARVGELLPGVPGEVVERAGHGYERWAELVAQAGYCHHP
Ga0184625_1018768933300018081Groundwater SedimentVTEPVRVGELLPGVIGEVVDRAGHGYDRWMELVAQAGYCHHPIRL
Ga0184625_1020348423300018081Groundwater SedimentMTEPVRVGELLPDVLGELVERAGHGYERWAELVAQAGYCH
Ga0190268_1175358613300018466SoilMSEPMAVGELLPGVLQEVIDRAGAGYERWAEQVAATGYCAHPVRLRGR
Ga0193739_117435123300020003SoilMTEPIQVGELLPGVVAEAIARAGPGYDRWMEQVAATGYCTHPVRLRG
Ga0209574_1036341623300027809AgaveVSEPVRVGELLPGVVGELVERAGHGYERWAELVAQAGYCHHP
Ga0207428_1019421013300027907Populus RhizosphereMTEPVRVGELLPGVLAEVVDRAGHGYSRWAELVAQAGYC
Ga0209382_1157385913300027909Populus RhizosphereMSEPVLVGELLPGVLQEVIERAGPGYERWAEQVAATGYCAH
Ga0247818_1039173413300028589SoilMTEPTRVGELLPGVLGEVIDRAGHGYERWATSSAHRS
Ga0247821_1034552213300028596SoilMTEPVRVGELLPGVLGEVVDRAGHGYDRWAELVAQA
Ga0307291_100400413300028707SoilMSEPARVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYC
Ga0307295_1011418923300028708SoilMTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGYCTH
Ga0307301_1015408313300028719SoilVTDPARVGELLPGVLGEVVDRAGQGYDRWAELVAQAGYC
Ga0307301_1030463113300028719SoilMSDPVRVGELVPGVLGEVVERAGHGYDRWAELVAQAGYCH
Ga0307315_1031204213300028721SoilMTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGYCTHP
Ga0307319_1014462423300028722SoilMIEPVRVGEVLPGVLAEVVERAGRGYDRWAELVAQAGY
Ga0307319_1020564623300028722SoilMTEPVRVGELLPDVLGELVERAGHGYERWAELVAQAGYCHHPIRLAG
Ga0307318_1023449013300028744SoilMEPIQVGELLPGVLQEVIDRAGPGYERWAEQVAATGYCAHPVRLR
Ga0307297_1030635423300028754SoilVTEPTRVGELLPGVLGEVVDRAGHGYDRWAELVAQA
Ga0307320_1015044013300028771SoilMTDPVRVGELLPGVLAEVVDRAGHGYDRWAEQVAATGYCTHPVRLRG
Ga0307290_1026522313300028791SoilMSEPVGVGELLPGVLGEVVDRAGPGYDRWMELVAQ
Ga0307287_1007783223300028796SoilMTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATGY
Ga0307287_1008984313300028796SoilMTEPVQVGELLPGVLGEVVERAGHGYERWAELVAQAGY
Ga0307287_1011023023300028796SoilMTEPVRVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYCHHPIRLA
Ga0307284_1025256823300028799SoilMTDPVRVGELLPGVLAEVVDRAGHSYDRWAEQVAATG
Ga0307305_1054109623300028807SoilMTEPTRVGELVLGVLGEVVERAGHGYERWAELVAQAGYCHHPIR
Ga0307294_1028490413300028810SoilMTDPVGVGELLPGVLAEVVDRAGHGYQRWAELVAQAGY
Ga0307302_1002289843300028814SoilMSEPVLVGELLPEVVAEAIARAGPGYDRWMEQVTAT
Ga0307310_1066166213300028824SoilVTEPTRVGELLPGVLGEVVDRAGHGYDRWAELVAQAGYCHHPIRLAG
Ga0307300_1019170523300028880SoilMSEPARVGELLPGVPGEVVERAGHGYERWAELVAQA
Ga0307277_1041541413300028881SoilMTEPVRVGELLPGVLGEVVDRAGHGYERWAELVAQVGYCH
Ga0307304_1023902723300028885SoilMTDPVRVGELLPGVLAEVVDRAGHGYDRWAEQVAATGYCTHPVGLRG
Ga0247827_1095671713300028889SoilVTEPVRVGELLPGVIGEVVDRAGHGYERWTELVAQAGYCHHPI
Ga0268259_1010288813300030499AgaveMTEPIRVGEALPGVLAEVVDRAGHGYERWAELVAQAG
Ga0268259_1019511223300030499AgaveVSEPIQVGELLPGVLQEVIDRAGPDYDRWAEQVAATGYCAHPVR
Ga0268253_1026531113300030514AgaveVSEPVRVGELLPGVVGELVERAGHGYERWAELVAQAGYCHHPIRL
Ga0307408_10203970413300031548RhizosphereMTEPVRVGELLPGVLGELVDRAGHGYERWAELVAQAG
Ga0307405_1023653013300031731RhizosphereVTEPVQVGELLPGVLGEVVDRAGHGYERWAELVAQAGYCHHP
Ga0307405_1039772913300031731RhizosphereMTEPARVGEMLPGVLAEVVDRAGHGYDRWAELVAQAGYCHH
Ga0307405_1133596623300031731RhizosphereMSQPVQVGELLPEVLAEVIQRAGNRYDRWAEQVAAT
Ga0307413_1049496013300031824RhizosphereMSEPMPVGAVLPGVLAEVVDRAGAGYDRWMELVAQAGFCHHPIR
Ga0307413_1087746713300031824RhizosphereVTEPVQVGELLPGVLGEVVDRAGVGYDRWAELVAQAGYCHHPI
Ga0307413_1160812613300031824RhizosphereMTEPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGYCVH
Ga0307413_1211795613300031824RhizosphereMTDPVRVGELLPDVLAEVIDRAGHGYERWAELVAQAGYCH
Ga0307410_1040350813300031852RhizosphereMSEPIQVGELVPGVLGELVDRAGAGYARWAELVAQAGYCHHPIRLA
Ga0307406_1056290923300031901RhizosphereMTEPSLVGELLPGVLQEVIDRAGPSYERWAEQVAATGYCAH
Ga0307406_1170183213300031901RhizosphereMTEPARVGELLPEVLQEVVQRAGHGYDRWAELVAQAGYCHH
Ga0307407_1010469113300031903RhizosphereMTEPVLVGDVLPGVVAEAIARAGPGYDRWAEQVAATGY
Ga0307407_1020333033300031903RhizosphereMSEPALVAELLPGVLQEVIDRAGPGYERWAEQVAATGYCTHPVR
Ga0307407_1073911433300031903RhizosphereMTDPTRVGELLPSVLGEVVERAGHGYERWAELVAQAGY
Ga0307407_1170013313300031903RhizosphereMTDPVLIGELLPEVVAEAIARAGPGYDRWAEQVAATG
Ga0308175_10283248823300031938SoilMSEPARVGEVVPGVLAEVIGRAGHGYARWAELVAQAGY
Ga0307409_10020585933300031995RhizosphereMSEPAQVGDVLPGVLAEVIDRAGHGYARWAELVAQA
Ga0307409_10123899713300031995RhizosphereMTDPARVGDVLPGVLAEVVDRAGHGYDRWAELVAQAG
Ga0307416_10022492433300032002RhizosphereMSEPARVGELLPGVLGEVVDRAGHGYERWAELVAQAGYCHHPI
Ga0307416_10060649813300032002RhizosphereMTDPVRVGELLPGVLAEVVDRAGHGYERWAELVAQAGYCHHPIRLA
Ga0307416_10086318213300032002RhizosphereMTEPVRVGELLPGVVAELVERAEHGYDRWAELVAQAGYCHHPIR
Ga0307416_10139691123300032002RhizosphereMSQPVQVGELLPGVVAEAIARAGPGYDRWAEQVAATGY
Ga0307416_10150655323300032002RhizosphereMTQPTRVGELLPGVLGEVVDRAGHGYQRWAELVAQAGYCHHPIR
Ga0307416_10280529413300032002RhizosphereVSGPVLVGELLPKVLAEVVQRGGPGYGRWAELVAQAGYCHHPI
Ga0307416_10280561213300032002RhizosphereMTEPVRVGEVLPEVIAEAIARAGPGYARWMELVAQTGYCTH
Ga0307416_10336479423300032002RhizosphereVTEPTRVRELLPGVLEEVVDRAAHSYDRWAELVAQ
Ga0307415_10008062143300032126RhizosphereMSEPAQVGDVLPGVLAEVIDRAGHGYARWADLVAQAG
Ga0307415_10125438613300032126RhizosphereMSDPALVGDVLPGVVAEAIARAGPGYDRWMEQVAATGYCTH
Ga0307415_10181654823300032126RhizosphereMSEPVAVGELLPGVLQEVIDRAGPGYDRWAEQVAATG
Ga0307415_10219644713300032126RhizosphereVTGPVRVGELLPGVVAELVERAGHGYDRWAELVAQAGYCHHPIRLAG
Ga0268251_1027086613300032159AgaveMSAPALVAELLPGVLQEVIDRAGPGYDRWAEQIAAT
Ga0247829_1037283423300033550SoilMNEPTRVGDVLPGVLAEVVDRAGRGYDRWAALALPS
Ga0334913_063829_671_7753300034172Sub-Biocrust SoilMTEPTRVGELLPGVLQEVIDRAGPGYDRWAEQVAA
Ga0334932_015393_2_1393300034174Sub-Biocrust SoilVREPIQVGELLPGVLQEVIDRAGPGYEQWAEQVAATGYCAHPVRLR
Ga0334932_051131_2_1123300034174Sub-Biocrust SoilMTDPVRVGELLPGVLAEVVDRAGYGYDRWAELVAQAG


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