Metagenome / Metatranscriptome Family F089133

Basic Information
Family ID	F089133
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	52 residues
Representative Sequence	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETPPKERDTVPA
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.16 %
% of genes near scaffold ends (potentially truncated)	21.10 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (72.477 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.679 % of family members)
Environment Ontology (ENVO)	Unclassified (48.624 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.468 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.00% β-sheet: 0.00% Coil/Unstructured: 75.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00881	Nitroreductase	9.17
PF00293	NUDIX	4.59
PF04185	Phosphoesterase	4.59
PF14696	Glyoxalase_5	3.67
PF01066	CDP-OH_P_transf	2.75
PF06123	CreD	1.83
PF00270	DEAD	1.83
PF12706	Lactamase_B_2	1.83
PF13416	SBP_bac_8	1.83
PF01047	MarR	0.92
PF07282	OrfB_Zn_ribbon	0.92
PF13374	TPR_10	0.92
PF02518	HATPase_c	0.92
PF07995	GSDH	0.92
PF13551	HTH_29	0.92
PF00067	p450	0.92
PF07992	Pyr_redox_2	0.92
PF00535	Glycos_transf_2	0.92
PF02775	TPP_enzyme_C	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	4.59
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	2.75
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	2.75
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	2.75
COG4452	Inner membrane protein CreD involved in colicin E2 resistance	Defense mechanisms [V]	1.83
COG2124	Cytochrome P450	Defense mechanisms [V]	0.92
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	55.96 %
Unclassified	root	N/A	27.52 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.92 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.92 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	41.28 %
Unclassified	root	N/A	27.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.75 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.92 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	11.01 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.92 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	11.01 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.92 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.92 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	11.01 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.92 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.92 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	11.01 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.92 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.92 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	11.01 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.75 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.92 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.92 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908036\|A5_v_NODE_1627_len_1778_cov_7_787402	All Organisms → cellular organisms → Bacteria	1828	Open in IMG/M
2162886012\|MBSR1b_contig_7108065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	811	Open in IMG/M
3300002245\|JGIcombinedJ26739_100132359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2354	Open in IMG/M
3300005167\|Ga0066672_10685987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	658	Open in IMG/M
3300005175\|Ga0066673_10730457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	569	Open in IMG/M
3300005176\|Ga0066679_10912398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	552	Open in IMG/M
3300005178\|Ga0066688_10528255	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300005290\|Ga0065712_10228261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1019	Open in IMG/M
3300005328\|Ga0070676_10321342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1055	Open in IMG/M
3300005328\|Ga0070676_10466715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	890	Open in IMG/M
3300005331\|Ga0070670_100945187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	782	Open in IMG/M
3300005331\|Ga0070670_101182910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	698	Open in IMG/M
3300005335\|Ga0070666_11027958	Not Available	612	Open in IMG/M
3300005353\|Ga0070669_100298285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1295	Open in IMG/M
3300005354\|Ga0070675_100855311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	832	Open in IMG/M
3300005367\|Ga0070667_100528878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1082	Open in IMG/M
3300005436\|Ga0070713_101597326	All Organisms → cellular organisms → Bacteria → Proteobacteria	633	Open in IMG/M
3300005441\|Ga0070700_100006815	All Organisms → cellular organisms → Bacteria	6125	Open in IMG/M
3300005467\|Ga0070706_101737858	Not Available	568	Open in IMG/M
3300005471\|Ga0070698_102175068	Not Available	508	Open in IMG/M
3300005518\|Ga0070699_101984408	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300005539\|Ga0068853_100256508	Not Available	1606	Open in IMG/M
3300005561\|Ga0066699_10317077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1112	Open in IMG/M
3300005569\|Ga0066705_10165245	All Organisms → cellular organisms → Bacteria → Proteobacteria	1368	Open in IMG/M
3300005569\|Ga0066705_10594164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	680	Open in IMG/M
3300005578\|Ga0068854_100438269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1088	Open in IMG/M
3300005615\|Ga0070702_100322857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1077	Open in IMG/M
3300005718\|Ga0068866_10066381	All Organisms → cellular organisms → Bacteria → Proteobacteria	1890	Open in IMG/M
3300005843\|Ga0068860_100242488	All Organisms → cellular organisms → Bacteria → Proteobacteria	1753	Open in IMG/M
3300005844\|Ga0068862_101202403	Not Available	756	Open in IMG/M
3300006028\|Ga0070717_11441212	Not Available	625	Open in IMG/M
3300006196\|Ga0075422_10188903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	841	Open in IMG/M
3300006237\|Ga0097621_101385242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	665	Open in IMG/M
3300006854\|Ga0075425_100146258	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	2706	Open in IMG/M
3300009012\|Ga0066710_101265037	All Organisms → cellular organisms → Bacteria → Proteobacteria	1144	Open in IMG/M
3300009029\|Ga0066793_10654481	Not Available	597	Open in IMG/M
3300009100\|Ga0075418_12073226	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300009137\|Ga0066709_100896028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1292	Open in IMG/M
3300009143\|Ga0099792_10140526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1319	Open in IMG/M
3300009147\|Ga0114129_10448391	All Organisms → cellular organisms → Bacteria → Proteobacteria	1692	Open in IMG/M
3300009156\|Ga0111538_10657694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1328	Open in IMG/M
3300009156\|Ga0111538_11763931	Not Available	779	Open in IMG/M
3300010866\|Ga0126344_1043344	All Organisms → cellular organisms → Bacteria → Proteobacteria	769	Open in IMG/M
3300010880\|Ga0126350_10086744	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	667	Open in IMG/M
3300011269\|Ga0137392_11336758	Not Available	576	Open in IMG/M
3300011270\|Ga0137391_10352394	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1264	Open in IMG/M
3300012198\|Ga0137364_11411560	Not Available	515	Open in IMG/M
3300012199\|Ga0137383_10962302	Not Available	623	Open in IMG/M
3300012199\|Ga0137383_11020932	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012200\|Ga0137382_10173318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1473	Open in IMG/M
3300012207\|Ga0137381_11264435	Not Available	631	Open in IMG/M
3300012208\|Ga0137376_10080810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2724	Open in IMG/M
3300012208\|Ga0137376_11702505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	521	Open in IMG/M
3300012209\|Ga0137379_10587613	Not Available	1020	Open in IMG/M
3300012210\|Ga0137378_11187624	Not Available	679	Open in IMG/M
3300012212\|Ga0150985_121055413	Not Available	582	Open in IMG/M
3300012285\|Ga0137370_10826550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	574	Open in IMG/M
3300012361\|Ga0137360_10997804	Not Available	722	Open in IMG/M
3300012485\|Ga0157325_1039605	Not Available	507	Open in IMG/M
3300012495\|Ga0157323_1006102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	829	Open in IMG/M
3300012519\|Ga0157352_1047821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	628	Open in IMG/M
3300012891\|Ga0157305_10304494	Not Available	501	Open in IMG/M
3300012917\|Ga0137395_10257329	Not Available	1228	Open in IMG/M
3300012923\|Ga0137359_11517180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	558	Open in IMG/M
3300012957\|Ga0164303_10033963	All Organisms → cellular organisms → Bacteria → Proteobacteria	2125	Open in IMG/M
3300012961\|Ga0164302_10157887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1345	Open in IMG/M
3300012961\|Ga0164302_11744329	Not Available	523	Open in IMG/M
3300012989\|Ga0164305_10265086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1249	Open in IMG/M
3300013100\|Ga0157373_10796111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	697	Open in IMG/M
3300013308\|Ga0157375_10164020	All Organisms → cellular organisms → Bacteria → Proteobacteria	2366	Open in IMG/M
3300014968\|Ga0157379_10302028	All Organisms → cellular organisms → Bacteria → Proteobacteria	1459	Open in IMG/M
3300015090\|Ga0167634_1001197	All Organisms → cellular organisms → Bacteria	3202	Open in IMG/M
3300015193\|Ga0167668_1021860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1431	Open in IMG/M
3300015193\|Ga0167668_1035372	All Organisms → cellular organisms → Bacteria	1088	Open in IMG/M
3300015373\|Ga0132257_102019981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	744	Open in IMG/M
3300017792\|Ga0163161_10924287	Not Available	740	Open in IMG/M
3300018061\|Ga0184619_10306787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	727	Open in IMG/M
3300018468\|Ga0066662_11586358	Not Available	683	Open in IMG/M
3300019356\|Ga0173481_10331349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	720	Open in IMG/M
3300019888\|Ga0193751_1000672	All Organisms → cellular organisms → Bacteria → Proteobacteria	25151	Open in IMG/M
3300019888\|Ga0193751_1160093	Not Available	797	Open in IMG/M
3300021413\|Ga0193750_1003310	All Organisms → cellular organisms → Bacteria	4321	Open in IMG/M
3300021478\|Ga0210402_10000177	All Organisms → cellular organisms → Bacteria → Proteobacteria	72524	Open in IMG/M
3300025271\|Ga0207666_1002004	All Organisms → cellular organisms → Bacteria	2430	Open in IMG/M
3300025321\|Ga0207656_10295434	Not Available	801	Open in IMG/M
3300025893\|Ga0207682_10096882	All Organisms → cellular organisms → Bacteria → Acidobacteria	1286	Open in IMG/M
3300025911\|Ga0207654_10729856	Not Available	713	Open in IMG/M
3300025923\|Ga0207681_10131776	All Organisms → cellular organisms → Bacteria	1849	Open in IMG/M
3300025923\|Ga0207681_11602575	Not Available	545	Open in IMG/M
3300025932\|Ga0207690_11182532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	638	Open in IMG/M
3300025933\|Ga0207706_11660365	Not Available	516	Open in IMG/M
3300025934\|Ga0207686_10612910	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300025937\|Ga0207669_11042931	Not Available	688	Open in IMG/M
3300026041\|Ga0207639_10376941	All Organisms → cellular organisms → Bacteria → Acidobacteria	1273	Open in IMG/M
3300026088\|Ga0207641_10819280	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300026300\|Ga0209027_1039802	Not Available	1772	Open in IMG/M
3300026317\|Ga0209154_1090597	All Organisms → cellular organisms → Bacteria	1311	Open in IMG/M
3300026318\|Ga0209471_1057161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1786	Open in IMG/M
3300026322\|Ga0209687_1040109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1524	Open in IMG/M
3300026530\|Ga0209807_1065552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1637	Open in IMG/M
3300027587\|Ga0209220_1042322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1219	Open in IMG/M
3300027660\|Ga0209736_1007125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	3650	Open in IMG/M
3300027727\|Ga0209328_10174497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	651	Open in IMG/M
3300028047\|Ga0209526_10005624	All Organisms → cellular organisms → Bacteria	8548	Open in IMG/M
3300028381\|Ga0268264_11346683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	724	Open in IMG/M
3300031720\|Ga0307469_11646781	Not Available	617	Open in IMG/M
3300031847\|Ga0310907_10101373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1244	Open in IMG/M
3300031943\|Ga0310885_10421680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	714	Open in IMG/M
3300032179\|Ga0310889_10381081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	697	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.47%
Host-Associated	Host-Associated	38.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.55%
Plants	Host-Associated → Plants	38.53%
Aquatic	Environmental → Aquatic	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.68%
Sediment	Environmental → Aquatic → Sediment	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.84%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.42%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.42%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908036	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Active Layer A5	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015090	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5A, Northern proglacial tributary margin, adjacent to top of river)	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A5_v_00168230	2124908036	Soil	MCYEYGDWAWQARAVELAKKERKLPEAQKKPQHTEPQPEAAPETPSRERDTVPA
MBSR1b_0739.00007370	2162886012	Miscanthus Rhizosphere	MCYEYSDWAWKARIAELAKKEREVESQRPARTERQPEPTPETPPKERDTVPA
JGIcombinedJ26739_1001323592	3300002245	Forest Soil	MCYEYSDWAWQARALELAKKERKLPEAQKKPQQTEPQPEAAPETPSRERDTVPA*
Ga0066672_106859872	3300005167	Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEAPSRERDTVPA*
Ga0066673_107304572	3300005175	Soil	MCYEYSDWAWQARAAELAKKERKLPETQKTPQHTEPQPEAAQEAPSRERDTVPA*
Ga0066679_109123981	3300005176	Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEAPARERDTVPA*
Ga0066688_105282552	3300005178	Soil	MCYEYSDWAWKARAAELAKKQRQLADEQKKPRERTEPATPDAAPAMPGKEQEPVPA*
Ga0065712_102282612	3300005290	Miscanthus Rhizosphere	MCYEYSDWAWKARIAELAKKEREVESQRPARTERQPEPTPETPPKERDTVPA*
Ga0070676_103213422	3300005328	Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKMREVESQRPARTERQPERAAETPPKERDTVPA*
Ga0070676_104667152	3300005328	Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETPPKER
Ga0070670_1009451872	3300005331	Switchgrass Rhizosphere	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAVETPPKERDTVPA*
Ga0070670_1011829102	3300005331	Switchgrass Rhizosphere	MCYEYSDWAWKARIAELAKKDREVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0070666_110279582	3300005335	Switchgrass Rhizosphere	TMCYEYSDWAWKARVAELAKKERGVDSQRPARTGRQPEPAAETPPKERDTVPA*
Ga0070669_1002982851	3300005353	Switchgrass Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0070675_1008553112	3300005354	Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKERGVDSQRPARTGRQPEPAAETPPKERDTVPA*
Ga0070667_1005288782	3300005367	Switchgrass Rhizosphere	MCYEYSDWAWKARIAELAKKEREVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0070713_1015973262	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MCYEYSDWAWKARIAALAKKERKLPETQTKPQHTEPQPEAAPAAAPRERDTVPA*
Ga0070700_1000068151	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0070706_1017378581	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MCYEYSDWAWKARAAELAKKERKLAESQKKPERTEPQPEAAGEPPPKEHETVPA*
Ga0070698_1021750681	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MDRKETMCYEYSDWAWKARIAALAKKERKLPETQTKPQHTEPQPEAAPPAAPRERDTVPA
Ga0070699_1019844082	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MCYEYSDWAWKARIAALAKKERKLPETQTKPQHTEPQPEAAPPAAPRERDTVPA*
Ga0068853_1002565082	3300005539	Corn Rhizosphere	MCYEYSDWAWKTRVAEIANKMREVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0066699_103170771	3300005561	Soil	MCYEYSDWAWQARAAELAKKERKLPETQKTPQHTEPQPEAAPEAPSRERDTVPA*
Ga0066705_101652451	3300005569	Soil	MCYEYSDWAWKARAAELAKKERKLAESQKKPERAEPQPEATPEPPKETVPA*
Ga0066705_105941641	3300005569	Soil	EYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEAPARERDTVPA*
Ga0068854_1004382692	3300005578	Corn Rhizosphere	MCYEYSDWAWKARVAELAKKMREVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0070702_1003228572	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPERAAETPPKERDTVPA*
Ga0068866_100663811	3300005718	Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKVRGVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0068860_1002424881	3300005843	Switchgrass Rhizosphere	MCYEYSDWAWKARIAELAKKEREVESQRPARTERQPE
Ga0068862_1012024031	3300005844	Switchgrass Rhizosphere	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETSPKERDKVPA*
Ga0070717_114412122	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MCYEYSDWAWKARIAALAKKERKLPETPTKPQHTEPQPEAAPAAAPRERDTVPA*
Ga0075422_101889032	3300006196	Populus Rhizosphere	MCYEYSDWAWKARVAELAKKMREVESQRPARTERQPERAAETPPKERDTVP
Ga0097621_1013852421	3300006237	Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKARDVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0075425_1001462582	3300006854	Populus Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPAEETPPKERDTVPA*
Ga0066710_1012650372	3300009012	Grasslands Soil	MCYEYSDWAWKARAAELAKKQRQLADEQKKPRERTEPATPDAAPAMPGKEQEPVPA
Ga0066793_106544811	3300009029	Prmafrost Soil	MCYEYSDWAWKVRIAELAKKERKLPATQTKPQHTEPQPEAAPEAGSRERDTVPA*
Ga0075418_120732261	3300009100	Populus Rhizosphere	MCYEYSHWAWKARAAELAKKMGKLTEPQKKPRTEPQPEPAAKTSPKQRDT
Ga0066709_1008960282	3300009137	Grasslands Soil	MCYEYSDWAWKARAAELAKKQRQLPEEQKKPRERAEPAAPEAAPETPGKQHEPVPA*
Ga0099792_101405262	3300009143	Vadose Zone Soil	MCYEYSDLAWQARAAELAKKARKLPETQKAPQHTELQPEAAPEAPSRERDTVPA*
Ga0114129_104483912	3300009147	Populus Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPAAEAPPKERDTVPA*
Ga0111538_106576941	3300009156	Populus Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPAAETPPKGRDTVPA*
Ga0111538_117639311	3300009156	Populus Rhizosphere	MCYEYSDWAWKARVAELAKKTREVELQRPAQTERQPEPAAEAPPKERDTVPA*
Ga0126344_10433442	3300010866	Boreal Forest Soil	MCYEYSDWAWKARAAELAKKQRKQSEAQDKPQRTEPQPEAAPEMAPKERDTVPA*
Ga0126350_100867442	3300010880	Boreal Forest Soil	MCDEYSDWAWKARVAELAKKERKLPEAQTKPQHTEPQPEAAPEAAPRERDTVPA*
Ga0137392_113367582	3300011269	Vadose Zone Soil	MCYEYSDWAWKARIAALAKKERKLPEAQTKPQHTEPQPEAAPEAASPERDTVPA*
Ga0137391_103523942	3300011270	Vadose Zone Soil	MCYEYSEWAWKARIAALAKKERKLPEAQTKPQHTEPQPEAAPEAASPERDTVPA*
Ga0137364_114115601	3300012198	Vadose Zone Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQHSEPQPEAAPEAPSRERDTVPA*
Ga0137383_109623021	3300012199	Vadose Zone Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQRTEPQPEAAPETSSRERDTVPA*
Ga0137383_110209321	3300012199	Vadose Zone Soil	MCYEYSDWAWKVRIAELAKKERKLPEAQSKPQHTEPQAEAAPEAASRERDTVPA*
Ga0137382_101733181	3300012200	Vadose Zone Soil	MCYEYSDWAWQGAAELAKKARKLPETQKTPQHTEPQPEAAPEAPSRERDTVPA*
Ga0137381_112644351	3300012207	Vadose Zone Soil	MCYEYSDWAWKVRIAELAKKERKMPEAQTKPQHTEPQPEAAPAAAPRERDTVPA*
Ga0137376_100808103	3300012208	Vadose Zone Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQRTEPQPEAAPETPSRERDTVPA*
Ga0137376_117025052	3300012208	Vadose Zone Soil	MCYEYSDWAWKVRIAELAKKERKLPEAQSKPQHTEPQPEAAPAAAPRERDTVPA*
Ga0137379_105876131	3300012209	Vadose Zone Soil	MCYEYSDWAWKARAAELAKKQRQLADEQKKPRERTEPATPDAAP
Ga0137378_111876242	3300012210	Vadose Zone Soil	MCYEYSDWAWKARAAELAKKERKLAEAQKKQERTEPQPEAAPEAPPKEPETVPA*
Ga0150985_1210554131	3300012212	Avena Fatua Rhizosphere	MCYQYSDWAWKARVAELAKKERKVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0137370_108265502	3300012285	Vadose Zone Soil	MCYEYSDWAWQGAAELAKKARKLPETQKTPQHTEPQPQAAPEAPSRERDTVPA*
Ga0137360_109978042	3300012361	Vadose Zone Soil	MCYEYSDWAWKVRIAELAKKERKLPEAQTKPQHTEPQPEAAPEAASRERDTVPA*
Ga0157325_10396052	3300012485	Arabidopsis Rhizosphere	MCYEYSDWAWKARVAELAKKVREGESQRPARTERQPEPAEETPPKERDTVPA*
Ga0157323_10061021	3300012495	Arabidopsis Rhizosphere	MCYEYSDWAWKARVAELAKKMREVESQRPARTERQPEPAAETPPKERETVPA*
Ga0157352_10478211	3300012519	Unplanted Soil	MCYEYSDWAWKARVAELAKKMREVGSQRPARTERQPEPAAETPPKERDTVPA*
Ga0157305_103044941	3300012891	Soil	MCYEYSDWAWKTRVAELANKMREVESQRPARTERQPEPAAETPPKERDTVPA*
Ga0137395_102573291	3300012917	Vadose Zone Soil	MCYEYSDWAWQARATELAKKARKLPETQKTPQHTEPQPEAAPETPSRERDTVPA*
Ga0137359_115171801	3300012923	Vadose Zone Soil	MCYEYSDWAWKVRIAEQAKKERKLPEAQTKPQHTEPQPEAAPEAASRERDTVPA*
Ga0164303_100339632	3300012957	Soil	MCYEYSDWAWKARVAELAKTVREVESQRPARTERQPEPAAKTPPKERDTVPA*
Ga0164302_101578872	3300012961	Soil	MCYEYSDWAWKARVAELAKKEREVESQSSARTERQPEPAAETPPKERDTVPA*
Ga0164302_117443291	3300012961	Soil	EYSDWAWKARVAELAKKEREGESQRPARTERQPEPAAETPPNERNTVPA*
Ga0164305_102650862	3300012989	Soil	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPERAAETPPKERDTVPA*
Ga0157373_107961111	3300013100	Corn Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPAAETPPKERHTVPA*
Ga0157375_101640201	3300013308	Miscanthus Rhizosphere	MCYENSDWAWKARVAELAKKERGVDSQRPARTGRQPEPAAETPPKERDTVPA*
Ga0157379_103020282	3300014968	Switchgrass Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPA
Ga0167634_10011972	3300015090	Glacier Forefield Soil	MCYEYGDWAWQARAVELAKKERKLPEAQKKPQHTEPQPEAAPETPSRERDTVPA*
Ga0167668_10218602	3300015193	Glacier Forefield Soil	MCYEYGDWAWQARAVELAKKERKLPEAQKKPQQTEPQPEAAPETPSRERDTVPA*
Ga0167668_10353722	3300015193	Glacier Forefield Soil	VCYEYSDWAWKARVAELAKKERKLPEAQTKPQHTEPQPEAAPEAASRERDTVPA*
Ga0132257_1020199812	3300015373	Arabidopsis Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQ
Ga0163161_109242871	3300017792	Switchgrass Rhizosphere	MCYEYSDWAWKARIAELAKKEREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0184619_103067872	3300018061	Groundwater Sediment	MCYEYSDWAWKARAAELAKKQRQLAEEQRKPRERTEPAAPAAAPEMPGKDREPVPV
Ga0066662_115863583	3300018468	Grasslands Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEVAPEA
Ga0173481_103313492	3300019356	Soil	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETPPK
Ga0193751_100067218	3300019888	Soil	MCYEYSDWAWKARAAELAKKQRQLAEEQKKSRERTEPAAPDAAPATPGKEHEPVPA
Ga0193751_11600931	3300019888	Soil	MCYEYSDWAWKARIAALAKKERKLPETQTKPQHTEPQPEAAPAAAPRERDTVPA
Ga0193750_10033107	3300021413	Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEAPSRERDTVPA
Ga0210402_1000017739	3300021478	Soil	MCYEYSDWAWKLRVAELAKKERKLPEPQTKPQQTEPQPEAAPEAASRKRDTVPA
Ga0207666_10020043	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKMREVESQRPARTERQPERAAETPPKERDTVPA
Ga0207656_102954341	3300025321	Corn Rhizosphere	MCYEYSDWAWKARIAELAKKEREVESQRPARTERQPEPAAKTPPKERDTVPA
Ga0207682_100968822	3300025893	Miscanthus Rhizosphere	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0207654_107298561	3300025911	Corn Rhizosphere	MCYEYSDWAWKARVAELAKKMREVESQRPPRTERQPEPAAETPPKERDTVPA
Ga0207681_101317762	3300025923	Switchgrass Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0207681_116025751	3300025923	Switchgrass Rhizosphere	MCYENSDWAWKARVAELAKKERGVDSQRSARTGRQPEAAAETPPKERDTVPA
Ga0207690_111825321	3300025932	Corn Rhizosphere	MCYEYSDWAWKARVAELAKKMREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0207706_116603651	3300025933	Corn Rhizosphere	YEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0207686_106129102	3300025934	Miscanthus Rhizosphere	MCYEYSDWAWKARIAELAKKEREVESQRPARTERQREPAAETPPKERDTDTA
Ga0207669_110429311	3300025937	Miscanthus Rhizosphere	YSDWAWKARVAELAKKVREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0207639_103769412	3300026041	Corn Rhizosphere	MCYEYSDWAWKTRVAEIANKMREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0207641_108192801	3300026088	Switchgrass Rhizosphere	CYEYSDWAWKARVAELAKKMREVESQRPARTERQPERAAETPPKERDTVPA
Ga0209027_10398022	3300026300	Grasslands Soil	MCYEYSDWAWQARAAELAKKERKLPETQKTPQHTEPQPEAAQEAPSRERDTVPA
Ga0209154_10905972	3300026317	Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEVPSRERDTVPA
Ga0209471_10571613	3300026318	Soil	CYEYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEAPARERDTVPA
Ga0209687_10401092	3300026322	Soil	MCYEYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEAPARERDTVPA
Ga0209807_10655523	3300026530	Soil	EYSDWAWQARAAELAKKARKLPETQKTPQHTEPQPEAAPEAPARERDTVPA
Ga0209220_10423221	3300027587	Forest Soil	MCYEYGDWAWQARAVELAKKERKLPEAQKKPQHTEPQPEA
Ga0209736_10071254	3300027660	Forest Soil	MCYEYGDWAWQARAVELAKKERKLPEAQKKPQQTEPQPEAAPETPSRERDTVPA
Ga0209328_101744971	3300027727	Forest Soil	MCYEYSDWAWQARAAELAKKERKLPEAQKKPQQTEPQPEAAPETPSRDRDTVPA
Ga0209526_100056248	3300028047	Forest Soil	MCYEYSDWAWQARALELAKKERKLPEAQKKPQQTEPQPEAAPETPSRERDTVPA
Ga0268264_113466832	3300028381	Switchgrass Rhizosphere	MCYEYSDWAWKARVAELAKKVREVESQRPARTERQPEPAAETPPKG
Ga0307469_116467811	3300031720	Hardwood Forest Soil	MCYEYSDWAWKARIAALAKKERKLPEAQTKPPHTEPEPEAAPAAAPRERDTVPA
Ga0310907_101013731	3300031847	Soil	MCYEYSDWAWKARIAELAKKDREVESQRPARTERQPEPAAETPPKERDTVPA
Ga0310885_104216802	3300031943	Soil	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETP
Ga0310889_103810812	3300032179	Soil	MCYEYSDWAWKARVAELAKKEREVESQRPARTERQPEPAAETPPKERDTVP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089133

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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