Basic Information | |
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Family ID | F089080 |
Family Type | Metagenome |
Number of Sequences | 109 |
Average Sequence Length | 54 residues |
Representative Sequence | MPDTPLRGRRGRDRRIAERVATDFAARHAPPSPDDEVDFDVAAVDAEVED |
Number of Associated Samples | 97 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 86.24 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 93.58 % |
Associated GOLD sequencing projects | 97 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.50 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (100.000 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.771 % of family members) |
Environment Ontology (ENVO) | Unclassified (29.358 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (46.789 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 43.59% β-sheet: 0.00% Coil/Unstructured: 56.41% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.50 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Freshwater Sediment Sediment Sediment Polar Desert Sand Sediment Soil Groundwater Sediment Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Soil Soil Agricultural Soil Permafrost Soil Soil Soil Soil Natural And Restored Wetlands Tropical Peatland Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Fen Peat Soil Sediment Switchgrass Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
LWAnNN_05919680 | 2088090013 | Freshwater Sediment | MPTPPLRGRRGRDRRIADRVASDFAARHAPPAPGAGDAVDFDIAAVDAEVEDARRPTPTTRSP |
OU_02478660 | 2124908016 | MPESPRPPLRGRRGRDRRIAERVAADFATRHAPPTDEALGFDVAAVDAEVEDARRDAARAPRKPP | |
INPhiseqgaiiFebDRAFT_1007704163 | 3300000364 | Soil | VPDTPLRGRRGRDRRIGEKVATDFAARHAPRSADDEVDFDLAAV |
JGI10216J12902_1044052191 | 3300000956 | Soil | MADRDTPIRGRRGRDRRIAEKVAADFAARHATPTPEAEIDFDIAAVDAEVEDARRPARP |
A1565W1_108279931 | 3300001536 | Permafrost | VPDTPLRGRRGRDRRIAERVATDFAARHAARAPESETDFDVAAVDAEVADARR |
JGI24743J22301_100672512 | 3300001991 | Corn, Switchgrass And Miscanthus Rhizosphere | MPESTPPTLRGRRGRDRRIAERVAEEFASRHAATNDEDAVDFDVAAVDAEV |
Ga0063454_1004832161 | 3300004081 | Soil | MPDTPLRGRRGRDRRIAERVATDFAARHAPPRPENETDFDV |
Ga0062593_1010432002 | 3300004114 | Soil | MPESTTPPLRGRRGRDRRIAEQVAAEFAARHAPPRDEDAIDFDIGAVDAEVEDARRAEA |
Ga0063455_1011231612 | 3300004153 | Soil | MPDTPLRGRRGRDRRIAERVATEFAERHAPPRPENETDFDVAAVDAEV |
Ga0062589_1009269721 | 3300004156 | Soil | MAGTPLRGRRGRDRRIAEQVATDFATRHAPSRPEDEVDFDVGEVDAEVADARRAE |
Ga0062595_1006941951 | 3300004479 | Soil | MPESTPPTLRGRRGRDRRIAERIAEEFASRHAAKNDEDAVDFDVAAVDAEVEDARRA |
Ga0062595_1007432142 | 3300004479 | Soil | MAGTPLRGRRGRDRRIAERVATDFATRHAPPRPEDELDFDVAEVDAE |
Ga0062595_1014059691 | 3300004479 | Soil | MPESTPPTLRGRRGRDRRIAERVAEEFATRHAPRVDEDAVDFDVAAVDAEVEDA |
Ga0062592_1010722912 | 3300004480 | Soil | VPDTPLRGRRGRDRRIAERVATDFATRHAPPSPDDEIDFDVAAVDAEVE |
Ga0062594_1017144542 | 3300005093 | Soil | MPDTPLRGRRGRDRRIAERVATDFAARHAPTPADQEVDFDVAAVDAEVD |
Ga0070690_1006095512 | 3300005330 | Switchgrass Rhizosphere | MPDTPLRGRRGRDRRIAERVATDFAARHAPPSPDDEVDFDVAAVDAEVED |
Ga0070690_1014569712 | 3300005330 | Switchgrass Rhizosphere | MPDTPLRGRRGRDRRIAERIATEFAERHAKPRPDAEAEVDFDVA |
Ga0070666_112758942 | 3300005335 | Switchgrass Rhizosphere | MPDTPLRGRRGRDRRISERVATDFAARHAGPSPETEIDFDVAAVDAEVE |
Ga0068868_1016568701 | 3300005338 | Miscanthus Rhizosphere | MRGRRGRDRRIAERVATDFAARHAPPSPDEEVDFDVAAVDAEVEDARRVPPKPRPA |
Ga0070668_1004849292 | 3300005347 | Switchgrass Rhizosphere | MRGRRGRDRRIAERVATEFAARHAPPKPEDEVDFDVAAVDAEVADA |
Ga0070671_1015589381 | 3300005355 | Switchgrass Rhizosphere | MPDTPLRGRRGRDRRISERVATDFAARHAGPSPETEIDFDV |
Ga0070705_1000790891 | 3300005440 | Corn, Switchgrass And Miscanthus Rhizosphere | MPESTTPPLRGRRGRDRRIAEEVARDFAARHAPPADDDVVDFDIGAVDAEVDDARRAEAG |
Ga0070678_1015685821 | 3300005456 | Miscanthus Rhizosphere | MPDTPLRGRRGRDRRIAERVATDFAARHAPPSPDDEVDFDVAAVDAEVEDARRLPPK |
Ga0070707_1006476721 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MPESTTPPLRGRRGRDRRIAEDVARDFAARHAPPTDDAVVDFDIGAVDAEVEDARGA |
Ga0070684_1017524482 | 3300005535 | Corn Rhizosphere | MPDTPLRGRRGRDRRIAERVATDFAARHAGPPPDTEVDFDIAAVDAEVEDARRP |
Ga0070695_1015050372 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | MAGTPHRGRRGRDRRIAEQVATDFASRHAPPRPEDEVDFDVGEVDAEVADAR |
Ga0070664_1000615514 | 3300005564 | Corn Rhizosphere | MPESTPPTLRGRRGRDRRIAERVAEEFASRHAAKNDEDAVDFDVAAVDAEVEDARRAPARATTR |
Ga0068866_113648182 | 3300005718 | Miscanthus Rhizosphere | VPETPRRGRRGRDRRIAERVATEFAARHAPPKPEDEVDFDVAAVDAEV |
Ga0066903_1034381012 | 3300005764 | Tropical Forest Soil | VPTPPLRGRRGRDRRIAERVATEFATRHAPPKPEDQVDFDVAEVDAEAEDARRAEADVGDDGA |
Ga0097621_1006099041 | 3300006237 | Miscanthus Rhizosphere | MPESTPPTLRGRRGRDRRIAERVAEEFASRHAAKNDEDAVDFDVAAVDAEVEDARRAP |
Ga0079217_114738871 | 3300006876 | Agricultural Soil | MPESTTPPLRGRRGRDRRIAEQVARDFASRHPRPKDEDAIDFDIAAVDAEIEDAR |
Ga0079215_108232881 | 3300006894 | Agricultural Soil | MPESTTPPLRGRRGRDRRIAEQVARDFASRHPRPKDEDAIDFDIAAVDAE |
Ga0075426_103002112 | 3300006903 | Populus Rhizosphere | MPEDAQPPLRGRRGRDRRIAERVAAEFATRHAPPVEPREDALDFDVAAVDAEV |
Ga0075424_1025320961 | 3300006904 | Populus Rhizosphere | MPESTPPTLRGRRGRDRRIAERVAEEFASRHAATNDEDAVDFDVAAVDAEVEDARRAPARAT |
Ga0079218_117245011 | 3300007004 | Agricultural Soil | MPESTTPPLRGRRGRDRRIAEQVAKDFAARHPRPRDEDIVDFDIGAVDAE |
Ga0079218_119249431 | 3300007004 | Agricultural Soil | MPESPRPPLRGRRGRDRRIAEKVAADFATRHAPTRDEDTVDFDVAAVDAE |
Ga0105240_118783782 | 3300009093 | Corn Rhizosphere | VPDTPLRGRRGRDRRIAERVATDFAARHAAPTADEMVDFDVAE |
Ga0114129_107334573 | 3300009147 | Populus Rhizosphere | MPESTPPTLRGRRGRDRRIAERVAEEFATRHAPRADEDAVDFDVAAVDAEVE |
Ga0126307_111572141 | 3300009789 | Serpentine Soil | MPDTPLRGRRGRDRRIAERIATEFATRHAAPRPETETDFDIAAVDAEVADARRREAAATATAE |
Ga0105239_103250363 | 3300010375 | Corn Rhizosphere | MAGTPLRGRRGRDRRIAEQVATDFASRHAPPRPEDEVDFDVGEVDAEVAD |
Ga0134123_101160961 | 3300010403 | Terrestrial Soil | MAERATPPIRGRRGRDRRLAEQAASTLAARHRPIADEDTVDFDLAAVDAEAEDARRAEAR |
Ga0134123_101490651 | 3300010403 | Terrestrial Soil | MADAMAGTMPDSTPPTLRGRRERERRIADRVAADFASRHAPPTDDQVLDFDVAAVDAE |
Ga0151623_11289132 | 3300011264 | Sediment | VPAPTPPLRGRRGRDRRIAERVTTEFATRHAPPTREALDFDVAEVDREIEDEERRAARAAGIPR |
Ga0137438_11302161 | 3300011431 | Soil | MPTPTPPLRGRRGRDRRIAERVASDFAARHAAPAREALDFDVAE |
Ga0137432_12924331 | 3300011439 | Soil | MRGRRGRDRRIAERVATEFAARHAARSAEDQVDFDVAEVDAEVADA |
Ga0120153_10306021 | 3300011991 | Permafrost | VPDTPLRGRRGRDRRIAERVATDFAARHAARAPESETDFD |
Ga0136638_100167341 | 3300012094 | Polar Desert Sand | MPDRPGSTTPPIRGKRGRDRRIGEEVAAEWAARHAPIAEDAIDFDVAAVDAE |
Ga0137374_109920991 | 3300012204 | Vadose Zone Soil | MPTPPLRGRRGRDRRIAEQVTSEFAARHALRNEHAIDFDVAAV |
Ga0157309_102662021 | 3300012895 | Soil | MPDTPLRGRRGRDRRIAERVATDFAARHAPPSPDEEVDFDVAAV |
Ga0157288_101950632 | 3300012901 | Soil | MRGRRGRDRRIAEEVAKDFAARHPRPKDEDVVDFDIGAVDAEVDDARRAA |
Ga0157286_101096372 | 3300012908 | Soil | MRGRRGRDRRIAEQVAADFAARHAPPRDDETLDFDLGAVDAEIEDARRAEAAAAAEGAATAYDDA |
Ga0164298_110743802 | 3300012955 | Soil | MPDTPLRGRRGRDRRIAERIATDFATRHTPPRPETETDFDVTAVDAEVADAR |
Ga0164309_114913821 | 3300012984 | Soil | MPDTPLRGRRGRDRRIAERVATDFAARHAPPRPENETDFDIAAVDAEVADARRLD |
Ga0164308_112921562 | 3300012985 | Soil | MPDTPLRGRRGRDRRIAERIATDFATRHTPQRPETETDFDVAAVDAEVADARRRDAKAIE |
Ga0164308_119000792 | 3300012985 | Soil | MPESTTPPLRGRRGRDRRIAEQVAAEFAARHAPPRDEDAIDFDIGAVDAEVEDARRAEADADTAP |
Ga0164304_106936852 | 3300012986 | Soil | MPDRPGPSTPPLRGRRGRDRRIAEQVASAFAARHAPPRDDEAIDFDVAEVDAEVAAARRGPVA |
Ga0164305_114974151 | 3300012989 | Soil | MPDIPLRGRRGRDRRIAERIATEFAERHAKARPEAEAEVDFDVAAVDAE |
Ga0157378_116404732 | 3300013297 | Miscanthus Rhizosphere | MAGTPLRGRRGRDRRIAEQVATDFASRHAPPRPEDEVDFDVGEVDAEVADARRPEAEDGQ |
Ga0075311_11788912 | 3300014259 | Natural And Restored Wetlands | MPTPPLRGRRGRDRRIAERVAADFAARHAPPAEEAIDFDIAAVDAEVDDARRPPRPTPA |
Ga0173480_102819382 | 3300015200 | Soil | VPDTPLRGRRGRDRRIAERVATDFAARHAPPSPDDEVDFDVGAVDAEVED |
Ga0173478_102290302 | 3300015201 | Soil | MRGRRGRDRRIAEQVAADFAARHAAPREDETLDFDVGAVDAEVEDARRAEAAAAA |
Ga0173478_107561612 | 3300015201 | Soil | MPDTPLRGRRGRDRRIAERVATDFAARHAPTPADQEVDFDVAAVDAEVDDARRDP |
Ga0187787_103302302 | 3300018029 | Tropical Peatland | MPESTTPPMRGRRGRDRRIAERVAADFAARHAPPSAEEAVDFDVAEV |
Ga0184621_101834852 | 3300018054 | Groundwater Sediment | MPESTTPPLRGRRGRDRRIAEQVARDFAARHAPPRDDEVTDFDIGAVDAEVEDARRAE |
Ga0184629_101237343 | 3300018084 | Groundwater Sediment | MRGRRGRDRRIAERVATEFAARHAAPSAEDEVDFDVAEVDAEVADARRATPAPRAPVKPP |
Ga0190265_126491623 | 3300018422 | Soil | MPESTTPPLRGRRGRDRRIAEQVAKDFAARHPRPRDEDLVDFDIGALDAEVEDARRTEAP |
Ga0210382_102066312 | 3300021080 | Groundwater Sediment | MPDRPTRATPPLRGRRGRDRRIAEQVASEFAARHAPPRDEDALDFDLAAVGAEV |
Ga0224510_105029902 | 3300022309 | Sediment | VPDRPSSEAHRLRGRRGRDRRIGEEVAAAFAARHRGPIDVDTVDFDTAAVDGDVADAR |
Ga0247794_102617281 | 3300024055 | Soil | MPESTPPTLRGRRGRDRRIAERVAEEFATRHAPRVDEDAVDFDVAAVDAEVEDARRETVRAPSRKRRRD |
Ga0247794_102807061 | 3300024055 | Soil | MPESTTPPLRGRRGRDRRIAEQVAAEFAARHAPPRDEDAIDFDIGAVDAEVEDARRAEAEAESGAAARRTT |
Ga0207645_108175732 | 3300025907 | Miscanthus Rhizosphere | MAGTPLRGRRGRDRRIAEQVATDFASRHAPPRPEDEVDFDVGEVDAEV |
Ga0207645_110128151 | 3300025907 | Miscanthus Rhizosphere | VPDTPLRGRRGRDRRIAERVATDFATRHAPPSPDDEIDFDVAAVDAEVEDSRRPRPKTQP |
Ga0207660_115152001 | 3300025917 | Corn Rhizosphere | MPESTTPPLRGRRGRDRRIAEDVARDFAARHAPPTDEDVVDFDIGAVDAEVDDARRAEAGDGAP |
Ga0207690_101216081 | 3300025932 | Corn Rhizosphere | MPESTPPTLRGRRGRDRRIAERVAEEFASRHAAKNDEDAVDFDVAAVDAEVEDARRAPARAPTR |
Ga0207709_106803102 | 3300025935 | Miscanthus Rhizosphere | MPTPPLRGRRGRDRRIAEQVAGDFAARHARRDNEALDFDVAETDAEVADAARAEARAAQPARRSRR |
Ga0207711_113043681 | 3300025941 | Switchgrass Rhizosphere | MPESTPPTLRGRRGRDRRIAERVAEEFASRHAAKNDEDAVDFDVAAVDAEVEDARRAPARAPTRKRRRD |
Ga0207641_120261332 | 3300026088 | Switchgrass Rhizosphere | VPDTPLRGRRGRDRRIAERVATDFAARHAPPSADEEVDFD |
Ga0207676_108499002 | 3300026095 | Switchgrass Rhizosphere | VPDTPLRGRRGRDRRIAERVATDFAARHAPPSADEEVDFDIGAVDAEVEDARREPPKP |
Ga0307295_101211891 | 3300028708 | Soil | MPESTTPPVRGRRGRDRRIAEDVARDFAARHAPPADEDVVDFDIGAVDAEIEDARRAEARDGAPPRK |
Ga0307280_103514042 | 3300028768 | Soil | MPETPMRGRRGRDRRIAERVATDFAARHAAPAPDEAVDF |
Ga0307306_100989251 | 3300028782 | Soil | MPETPMRGRRGRDRRIAERVATDFAARHAAPAPDEAVDFDTAAVDAEVEDTRRAPASPRAPA |
Ga0307323_101686362 | 3300028787 | Soil | MPESTTPPLRGRRGRDRRIAEDVARDFAARHAPPAEDEVIDFDIGAVDHEIDDARRAEARDGAPP |
Ga0307290_101039911 | 3300028791 | Soil | MPESTTPPLRGRRGRDRRIAEQVAKDFAARHAPPRDDEVTDFDIGALDAVVEDARR |
Ga0307290_102221461 | 3300028791 | Soil | MPESTTPPLRGRRGRDRRIAEDVARDFAARHAPPAEDEVIDFDIGAVDQEIDDARRAEARDGAPPT |
Ga0307503_105597221 | 3300028802 | Soil | MPDTPLRGRRGRDRRIAERVATDFAARHPRPSPETEVDFD |
Ga0307281_100134385 | 3300028803 | Soil | MRGRRGRDRRIAERVATEFAARHAAPSAEDEVDFDVAEVDAEVA |
Ga0307296_104736141 | 3300028819 | Soil | VPTPPLRGRRGRDRRIAERVATDFAARHAPTKPEHEIDIDAAEVDAEVE |
Ga0307310_103248382 | 3300028824 | Soil | MPTPPLRGRRGRDRRIAERVATDFAARHATSPTNGVVDFDVAAVDAEVADAARAE |
Ga0307312_100576751 | 3300028828 | Soil | MPESTTPPLRGRRGRDRRIAEDVARDFAARHAPPAEDEVIDFDIGAVDQEIDDARRAEARDGAPPK |
Ga0307278_101156523 | 3300028878 | Soil | MPDRPTRATPPLRGRRGRDRRIAEQVASEFAARHAPPRDEDAVDFDVAAVDAEVEDAGRV |
Ga0307278_104787961 | 3300028878 | Soil | MPESPRPPLRGRRGRDRRIAERVAADFASRHAPPLDENAPAFDVAAVDAE |
Ga0247826_102279681 | 3300030336 | Soil | MPESTTPPLRGRRGRDRRIAEEVAKEFAARHPRPKDEDVVDFDIGAVDAEVDDARRAAARPD |
Ga0311366_100704644 | 3300030943 | Fen | MPPLRGRRGRDRRIGERVAADFATRHAPPTDDEGIDFDVAEVDAEVD |
Ga0302323_1003077991 | 3300031232 | Fen | MPPLRGRRGRDRRIGERVAADFATRHAPPTDDESIDFDVAEVDAEIDDHR |
Ga0310813_102712691 | 3300031716 | Soil | MPESTPPTLRGRRGRDRRIAERIAEEFASRHAAKNDEDAVDFDVAAVDAEVEDARRAPARAPT |
Ga0318501_106959592 | 3300031736 | Soil | MAGTPLRGRRGRDRRIAERVATDFATRHAPPRPEDEVDFDVAEVDAEVADALEAQM |
Ga0318557_103775231 | 3300031795 | Soil | MAGTPLRGRRGRDRRIAERVATDFATRHAPPRPEDE |
Ga0318576_103683872 | 3300031796 | Soil | MAGTPLRGRRGRDRRIAERVATDFATRHAPPRPEDEVDFDVAEVDA |
Ga0318568_109647032 | 3300031819 | Soil | MAGTPLRGRRGRDRRIAERVATDFATRHAPPRPEDEVDFDLAEVDAEVAD |
Ga0315290_105459102 | 3300031834 | Sediment | MPTPPLRGRRGRDRRIADRVASDFAARHAPPAPGADDAIDFDIAAVDAEVEDARRPTPTTPSPA |
Ga0315290_113173611 | 3300031834 | Sediment | MATPPLRGRRGRDRRIAERIATEFAARHSPAPPDEAVDFDVAEVDAEVADARRAPRTPT |
Ga0310904_104896141 | 3300031854 | Soil | MPDTPLRGRRGRDRRIAERVATDFAERHARPASETEVDFDVA |
Ga0307412_104954421 | 3300031911 | Rhizosphere | MMPDQPGPTLRGRRGRDRRIAERVAADFATRHAPPTDEEAVDFDVAAVDAEVDDA |
Ga0310909_112401872 | 3300031947 | Soil | MAGTPLRGRRGRDRRIAERVATDFATRHAPPRPEDEVDFDLAEVDA |
Ga0310897_106547382 | 3300032003 | Soil | MPESTPPTLRGRRGRDRRIAERVAEEFASRHAAKNDEDAVDFDVAAVDAEVEDARRAPARAPTRKRRGDEARKSGHR |
Ga0310906_105998352 | 3300032013 | Soil | MGDRTSPIRGRRGRDRRIGEKVAADFAARHAPPKDDVALDFDVAAVDAEVEDA |
Ga0214471_106783762 | 3300033417 | Soil | VPTPPLRGRRGRDRRIAERVATDFAASHARPAGETVDFDVAAVDAEVEDAA |
Ga0326726_116063171 | 3300033433 | Peat Soil | MPTPTPPLRGRRGRDRRIAERVATEFAARHAPPTREALDFDVAEVDREIEDERRRTSLVAVRATA |
Ga0364934_0087814_2_178 | 3300034178 | Sediment | MPESTTPPLRGRRGRDRRIAEQVAKDFAARHAPPAEADAIDFDIGAVDAEVEDARRAEA |
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