Metagenome / Metatranscriptome Family F089062

Overview

Basic Information

• Family ID: F089062
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 109
• Average Sequence Length: 60 residues
• Representative Sequence: MSWETIRNLVRDEWLILSLLLAWSLAGLAVICERFYALWNVIPKSEAFKNRVIDALE
• Number of Associated Samples: 97
• Number of Associated Scaffolds: 109

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 28.44 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 87.16 %
• Associated GOLD sequencing projects: 93
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (89.908 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (9.174 % of family members)
• Environment Ontology (ENVO): Unclassified (21.101 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (36.697 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 63.53%
  β-sheet: 0.00%
  Coil/Unstructured: 36.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02518	HATPase_c	8.26
PF00672	HAMP	3.67
PF13180	PDZ_2	0.92
PF02504	FA_synthesis	0.92
PF03109	ABC1	0.92
PF13491	FtsK_4TM	0.92
PF01618	MotA_ExbB	0.92
PF07586	HXXSHH	0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0416	Acyl-ACP:phosphate acyltransferase (fatty acid/phospholipid biosynthesis)	Lipid transport and metabolism [I]	0.92
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	0.92

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.83 %
Unclassified	root	N/A	9.17 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.83 %
Unclassified	root	N/A	9.17 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.91 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.92 %
Unclassified	root	N/A	9.17 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	87.16 %
Unclassified	root	N/A	9.17 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.92 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	0.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	86.24 %
Unclassified	root	N/A	9.17 %

Level 6

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.92 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	86.24 %
Unclassified	root	N/A	9.17 %

Level 7

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.92 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6.42 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.92 %
Unclassified	root	N/A	9.17 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	73.39 %

Level 8

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.92 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	73.39 %
Nannocystineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae	5.50 %
Unclassified	root	N/A	9.17 %

Level 9

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.92 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	73.39 %
Kofleriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae	5.50 %
Unclassified	root	N/A	9.17 %

Level 10

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.92 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	73.39 %
Haliangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium	5.50 %
Unclassified	root	N/A	9.17 %

Level 11

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.92 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.92 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	73.39 %
Haliangium ochraceum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Nannocystineae → Kofleriaceae → Haliangium → Haliangium ochraceum	5.50 %
Unclassified	root	N/A	9.17 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000955|JGI1027J12803_109347324	All Organisms → cellular organisms → Bacteria	599
3300003991|Ga0055461_10157256	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	601
3300004015|Ga0055462_10282842	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	543
3300004062|Ga0055500_10105313	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	631
3300005328|Ga0070676_10108357	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1726
3300005343|Ga0070687_100817464	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	662
3300005458|Ga0070681_11373066	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	630
3300005471|Ga0070698_101812640	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	563
3300005518|Ga0070699_101974890	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	533
3300005547|Ga0070693_100364040	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	993

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.72%
Host-Associated	Host-Associated	30.28%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.93%
Plants	Host-Associated → Plants	30.28%
Terrestrial	Environmental → Terrestrial	57.80%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	4.59%
Marine	Environmental → Aquatic → Marine	3.67%
Peat	Environmental → Terrestrial → Peat	15.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.10%
Roots	Host-Associated → Plants → Roots	1.83%
Sediment	Environmental → Aquatic → Sediment	2.75%
Soil	Environmental → Terrestrial → Soil	42.20%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.50%
Ice	Environmental → Aquatic → Freshwater → Ice	0.92%
Lake	Environmental → Aquatic → Freshwater → Lake	1.83%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.83%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.01%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.76%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.83%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	8.26%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.92%

Habitat

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.67%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	9.17%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	8.26%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.92%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.67%
Peat	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat	0.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	6.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.59%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	2.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300003991	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqB_D1	Environmental
3300004015	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D1	Environmental
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1093473241	3300000955	Soil	FQIMSWETIKDLVRDEWLILSLLLFWSLVGLTIICERAYALWNVLPKSEAFKNK
Ga0055461_101572562	3300003991	Natural And Restored Wetlands	MTWETIRNLIHDEWVILSLLLLWSVAGVAVICERIYALWGVLPKSETFKNRVIEAVE
Ga0055462_102828422	3300004015	Natural And Restored Wetlands	MSWETISNLIHDEWMILSLLLLWSIAGVTIICERVYSLWNVLGKSEVFKTRVIEAVEAGDLPKANALCET
Ga0055500_101053131	3300004062	Natural And Restored Wetlands	MRNLVRDEWLILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGDVAKATAL
Ga0070676_101083571	3300005328	Miscanthus Rhizosphere	MSWEMMRNLVRDEWVILSLLVAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERG
Ga0070687_1008174641	3300005343	Switchgrass Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGDVAKA
Ga0070681_113730662	3300005458	Corn Rhizosphere	MSWEMMRNLVRDEWLILSLLLAWSLAGLAVICERLYALWNVIPKSEAFKNRVIDALE
Ga0070698_1018126402	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTWETIRNLVRDEWVILSLLFVWSLAGLTVICERVYALWNVLGKSEAFKIKVIAALESGDLAKAS
Ga0070699_1019748901	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTWETILDLVRKEWFILSLLLLWSLAGLTIICERVYSLWNVLPKSEAFKTRVVQALESGDVSKANALCET
Ga0070693_1003640402	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSWETIRNLVRDEWLILSLLLAWSLAGLAVICERFYALWNLIPKSEAFKD
Ga0068856_1025919011	3300005614	Corn Rhizosphere	MTWETIRNLVRDEWVILSLLLLWSLAGLTVICERVYSLWNVIPKSMAFKNKVIAALEGGDLAKASAL
Ga0068852_1014209841	3300005616	Corn Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALER
Ga0068852_1027570931	3300005616	Corn Rhizosphere	MTWETIRNLVRDEWVILSLLLLWSLAGLTVICERVYSLWNVIPKSTAFKNKVIAALE
Ga0068851_106458272	3300005834	Corn Rhizosphere	MTWETIRNLVRDEWLILSLLLFWSLAGLSVICERVYSLWNVLPKSEAFKNKVLAALEGGDLAKAT
Ga0074470_115601702	3300005836	Sediment (Intertidal)	MSWETIRNLLHDEWAILLLLLVWSVAGVAVICERIYSLWGVLAKSEGFKVRVIEAVE
Ga0068863_1007513232	3300005841	Switchgrass Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLIPKSEAFKNRVIDALDKGDIAKATALCEM
Ga0068862_1001744872	3300005844	Switchgrass Rhizosphere	MTWETIRNLVRDEWVILSLLLLWSLAGLTVICERIYSLWNIVGKSEAFKTKVLAALDGGD
Ga0097621_1019164332	3300006237	Miscanthus Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALDKGDIAKATA
Ga0075421_1019551462	3300006845	Populus Rhizosphere	MTWETILDLVRKEWFILSLLLLWSLAGLTIICERIYSLWNVLPKSEAFKTRVVQALESGD
Ga0111539_119306572	3300009094	Populus Rhizosphere	MSWEMMRNLIRDEWLILSLLLAWSLAGLAVICERLYALWNLIPKSEAFKNRVVDALERGDLAKA
Ga0105245_122889342	3300009098	Miscanthus Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALE
Ga0075418_128241192	3300009100	Populus Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGDVAKATA
Ga0114129_133842091	3300009147	Populus Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNVVPKSEAFKNRVIDA
Ga0111538_127700721	3300009156	Populus Rhizosphere	MSWEMMRNLIRDEWLILSLLLAWSLAGLAVICERLYALWNLLPKSEAFKNRVVDALERGDVAKAAAM
Ga0111538_134348712	3300009156	Populus Rhizosphere	MSWETIRGLVRDEWLILSLLLLWSLVGLTIICERVYALWNAIPKAEAFKN
Ga0105248_129206212	3300009177	Switchgrass Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLIPKSEAFKNRVI
Ga0137430_10046743	3300012041	Soil	MRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGD
Ga0136634_103868062	3300012046	Polar Desert Sand	MTWELILDLIRKEWLILSMLLAWSLAGLTIICERIYSLWNVLPRSEAFKNKVIAALEGGDLSK
Ga0150984_1004855822	3300012469	Avena Fatua Rhizosphere	MTWETILDLVRKEWLILSLLLFWSLAGLTIIRERVYSLWNVLPKSEAFKNRVVGAIESGDISKAT
Ga0137373_105605592	3300012532	Vadose Zone Soil	MSWETIRNLLRDEWAILLLLLAWSVAGLSVICERIYSLWGVLPKSEAFKNRVIEAIEK
Ga0157374_120939712	3300013296	Miscanthus Rhizosphere	MSWEMMRNLGRDEGLILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGDIAKATALCE
Ga0120132_11175291	3300013832	Permafrost	MSWETIRNLVRDEWLILSLLLAWSLAGLAVICERFYALWNVIPKSEAFKNRVIDALE
Ga0163163_117877541	3300014325	Switchgrass Rhizosphere	MSWEMMRNLIRDEWLILSLLLAWSLAGLAVICERLYALWNLIPKSEAFKNRVIDALER
Ga0182011_103809852	3300014496	Fen	MSWETIRNLIHDEWAILLLLLAWSVAGLSVICERIYSLWRVLPKSEAFKN
Ga0182019_100136223	3300014498	Fen	MTWETISNLIHDEWMILSLLLLWSVAGVTIICERVYALWNVLAKSEVFKNHVIGAIESGDLPKAHAFC
Ga0182021_100875793	3300014502	Fen	MTWETISNLIHDEWMILLLLLLWSIAGLTIICERVYALWNVLAKSEVFKNHVIGAIESGDLPKAH
Ga0182021_115336102	3300014502	Fen	MTWETISNLIHDEWMILSLLLLWSVAGVTIICERVYALWNVLPKSEVFKNRVISAIEGGDLPKAH
Ga0182021_133498241	3300014502	Fen	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLAKSEVFKNHVIGAIESGDLPKAH
Ga0182027_107764132	3300014839	Fen	MTWETIANLIHDEWMILSLLLLWSVAGVTIICERVYALWNVLAKSEVFKNHVIGAIESG
Ga0182027_118864771	3300014839	Fen	MSWETIRNLIHDEWVILVLLLVWSVAGVAVICERIYALWGVLAKSEVFKNRVIEAVEKGD
Ga0163144_102338001	3300015360	Freshwater Microbial Mat	MTWETLRDLIRDEWIILVLLLAWSLAGLTIICERIYSLWNLLPRSEAFKDRVVGALESGDLAKARALCET
Ga0132257_1025296891	3300015373	Arabidopsis Rhizosphere	MTWETLRNLVRDEWVILSLLLAWSLAGLAVICERMYALWNLIPKSDAFRHRVVDALER
Ga0187861_100909742	3300018020	Peatland	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLPKSEVFKNRVVGAIESGDLPKAHA
Ga0187885_100163541	3300018025	Peatland	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLPKSEVFKN
Ga0190270_126740352	3300018469	Soil	MMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGD
Ga0190271_100149291	3300018481	Soil	MMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALER
Ga0182028_12739421	3300019788	Fen	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLAKSEVFKNHVIGAIEFKN
Ga0182028_14005553	3300019788	Fen	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLAKSEVFKN
Ga0224542_10417871	3300022516	Soil	MTWETILNLIHDEWMILLLLLLWSVAGVTIICERVYALWNVLPKSEVFKN
Ga0212093_12308851	3300022554	Hot Spring Sediment	MTWETITNLIHDEWAILSLLLLWSIAGVTIICERIYALWKVVPKSQVFKTQVIE
Ga0222622_100566352	3300022756	Groundwater Sediment	MSWEMMRNLIRDEWLILSLLLAWSLAGLAVICERLYALWNLIPKSEAFKNRVVDALERGD
Ga0247802_10286681	3300023077	Soil	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGD
Ga0256681_107303382	3300023311	Freshwater	MTWETISNLIHDEWMILLLLLLWSVAGVTIICERVYALWNVLPKSEVFKNHVIGAIES
Ga0210133_11226402	3300025573	Natural And Restored Wetlands	MSWETISNLIHDEWMILSLLLLWSIAGVTIICERVYSLWNVLGKSEVFKTRVIEAVEAGDLPKANALCETA
Ga0209584_103663251	3300025878	Arctic Peat Soil	MSWETIRNLLHDEWAILLLLLAWSVAGLSVICERIYSLWGVLSKSEAFKIRVIEAVEKGDLAKAAALCE
Ga0207707_113096642	3300025912	Corn Rhizosphere	MRNLVRDEWLILSLLLAWSLAGLAVICERLYALWNVIPKSEAFKNRVIDALE
Ga0207693_110298562	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSWETVRNLVRDEWLILSLLLAWSLAGLAVICERVYALWNLIPKSEAFKDRVIDAIARGDLGKAAAIS
Ga0207650_102712301	3300025925	Switchgrass Rhizosphere	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFK
Ga0207650_111135552	3300025925	Switchgrass Rhizosphere	MTWETILDLVRKEWFILSLLLLWSLAGLTIICERVYSLWNVLPKSEAFKTRVVQALESGDVS
Ga0207687_115624672	3300025927	Miscanthus Rhizosphere	MSWEMMRNLVRDEWLILSLLLAWSLAGLAVICERLYALWNVVPKSEAFKNR
Ga0207665_109619502	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTWETLRNLVRDEWVILSLLLAWSLAGLAVICERMYALWNLIPKSDAFRHRVVSIVETAPIPMP
Ga0207661_120760171	3300025944	Corn Rhizosphere	MSWEMIRNLVRDEWVILALLLVWSLAGLTVICERLYALWNILPKSEQF
Ga0207651_110577531	3300025960	Switchgrass Rhizosphere	MSWEMMRNLIRDEWLILSLLLAWSLAGLAVICERLYALWNLIPKSEAFKNRVVD
Ga0207683_101723911	3300026121	Miscanthus Rhizosphere	MALHSSVMSWEMIRNLVRDEWVILSLLLAWSLAGLTVICERVYALWNIIPKSETFKNRVIDALDNG
Ga0255357_10006113	3300026381	Soil	MTWETILNLIHDEWMILLLLLLWSVAGVTIICERVYALWNVLAKSEAFKNQVIGAIESGDLPKAHAFCE
Ga0209275_103770421	3300027884	Soil	MSWETIRNLVRDEWLILSLLLAWSLAGLAVICERLYALWNLLPKSEAFKDRVIDAIEKG
Ga0255358_10704352	3300028069	Soil	MTWETILNLIHDEWMILLLLLLWSVAGVTIICERVYALWNVLAKSEAFKNQVIGAI
Ga0265337_10802411	3300028556	Rhizosphere	MTWETIRNLVRDEWVILSLLLFWSLAGLTVICERVYSLWNVVPKSAAFKAKVIAA
Ga0265326_102428182	3300028558	Rhizosphere	MTWETIRNLLRDEWVILSLLLFWSLAGLTVICERIYALWGIVPKSEAFKNKVLAALEGGD
Ga0265323_101730791	3300028653	Rhizosphere	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLAKSEVFKNHVIAAIESG
Ga0302214_11047692	3300028736	Fen	MSWETIRNLIHDEWVILLLLLVWSVAGVAVICERIYSLWGVLAKSEVFKNRVM
Ga0302295_11356442	3300028856	Fen	MTWETIRNLIHDEWVILLLLLLWSIAGMAVICERVYALWRVLPKSEAFKNRVIEAVERGDLAKA
Ga0246001_10832581	3300029889	Peat	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLPKSEVFKNRVVGAIESGDLPK
Ga0311350_102740512	3300030002	Fen	MTWETISNLIHDEWMILSLLLLWSVAGLTIICERVYALWNVLAKSEVFKNHVIGAIESGDLPKAHAFCET
Ga0311350_113574181	3300030002	Fen	MSWETIRNLVHDEWAILSLLLVWSVAGLAVICERIYALWRVLPKSEVFKNRVVDAVSNGDLAKAAALCETGN
Ga0311350_120194771	3300030002	Fen	MTWETILNLIHDEWMILLLLVLWSVAGVTIICERVYALWNVLSKSEVF
Ga0311333_105961611	3300030114	Fen	MTWETILNLIHDEWMILLLLVLWSVAGVTIICERVYALWNVLSKSEVFKNRVIGAIESGDLPKAH
Ga0311349_110375372	3300030294	Fen	MSWETIRNLIHDEWAILLLLLVWSVAGVAVICERIYSLWGVLAKSEVFRTRVIEAVEKGDLAKATAL
Ga0311360_109723682	3300030339	Bog	MSWETIRNLIHDEWVILLLLLVWSVAGVAIICERVYSLWGVLGKSEIFKNRVIEAVEKGDLAKATAL
Ga0308200_11155192	3300030905	Soil	MTWETILDLVRKEWFILSLLLLWSLAGLTIICERVYSLWNVASKSEAFKTRVVAAIESGD
Ga0308200_11305112	3300030905	Soil	MTWETILDLVRKEWFILSLLLLWSLAGLTIICERVYSLWNVLPKSEAFKTRVVQALESGDVSKANALCE
Ga0308197_103955201	3300031093	Soil	MTWETILDLVRKEWFILSLLLLWSLAGLTIICERVYSLWNVLPKSEAFKTR
Ga0302323_1010967111	3300031232	Fen	MTWETIRNLIHDEWAILVLLLLWSVAGVAVICERIYSLWGVLPKSETFKNRVIEAVEKGDLAKASALCET
Ga0265330_100110713	3300031235	Rhizosphere	MTWETILNLIHDEWMILLLLLLWSVAGVTIICERVYALWNVLPKSEVFKNRVIGAIESGDLPKA
Ga0265339_100423742	3300031249	Rhizosphere	MTWETIRNLIHDEWVILLLLLVWSVAGLAVICERVYSLWGVLGKSEIFKNRVIEAVEKGDLAKAVALCETSNDP
Ga0265316_100979081	3300031344	Rhizosphere	MSWETIRNLVRDEWVILSLLLAWSLAGLTVICERFYALWNIIPKSELFKNRVIDALEHGDISKAAALCEM
Ga0310886_103091822	3300031562	Soil	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERLYALWNLVPKSEAFKNRVIDALERGDVAKATALCEMS
Ga0318515_103677331	3300031572	Soil	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERMYALWNVIPKSEAFKNRVVDALER
Ga0265313_100119251	3300031595	Rhizosphere	MTWETIRNLLRDEWVILSLLLFWSLAGLTVICERIYALWGIVPKSEAFKNKVLAA
Ga0306918_112212672	3300031744	Soil	MMRNLVRDEWLILTLLCAWSLAGLAVICERLYALWNLIPKSEAFKD
Ga0318502_107584492	3300031747	Soil	MMRNLVRDEWLILTLLCAWSLAGLAVICERLYALWNLIPKSEAFKDRVIGAIEHGDLSKAAALCE
Ga0318494_100144083	3300031751	Soil	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERMYALWNVIPKSEAFKNRVVDA
Ga0306925_106382951	3300031890	Soil	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERMYALWNVIPKSEAFKNRV
Ga0318522_102718762	3300031894	Soil	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERMYALWNVIPKSEAFKN
Ga0302322_1006638991	3300031902	Fen	MTWETIRNLIHDEWVILLLLLLWSIAGMAVICERVYALWRVLPKSEAFKNRVIEAVERGDLAKASALRETANDPLG
Ga0302322_1038842832	3300031902	Fen	MSWETIRNLIHDEWAILSLLLVWSVAGLAVICERIYALWNVLPKSEVFKNRVIDAVTAG
Ga0306923_106044861	3300031910	Soil	MMRNLVRDEWLILTLLCAWSLAGLAVICERLYALWNLIPKSEAFKDRVIGAIEH
Ga0318569_105354111	3300032010	Soil	MSWEMMRNLVRDEWVILSLLLAWSLAGLAVICERMYALWNVIPKSEAFKNRVVDALERND
Ga0310899_105531591	3300032017	Soil	MSWEMMRNLVRDEWVILSLLVAWSLAGLAVICERLYALWNLVPKSEAFKN
Ga0316580_102824632	3300032139	Rhizosphere	MTWETIRNLIHDEWVILSLLLLWSIAGVAVICERFYALWGVLPKSELFKNRV
Ga0335076_103011161	3300032955	Soil	MSWEMMRNLVRDEWVILTLLLAWSLAGLAVICERMYALWNLIPKSESFKNRVVDALEK
Ga0335076_113145021	3300032955	Soil	MSWETIRNLVRDEWLILSLLLAWSLAGLAVICERVYALWNIIPKSEAFKDRVIDA
Ga0214472_103596041	3300033407	Soil	MSWETIRDLIRDEWLILSLLLLWSLAGLTIICERVYALWKVIPKSEAFKNRVVAAIEAGD
Ga0316603_116951222	3300033413	Soil	MTWETIRNLIRDEWAILSLLLFWSVAGVAVICERIYALWGVLPKSETFKNRVVEAVERGDLAKAA
Ga0334815_054535_359_511	3300033797	Soil	MTWETILNLIHDEWMILLLLVLWSVAGVTIICERVYALWNVLSKSEVFKNR
Ga0334821_100675_1_192	3300033798	Soil	MTWETIANLIHDEWMILLLLLLWSVAGVTIICERVYALWNVLPKSEVFKDRVISAIEGGDLPKA
Ga0370490_0102114_2_172	3300034128	Untreated Peat Soil	MTWETIRNLIRDEWAILSLLLFWSVAGVAVICERVYALWGVLPKSETFKNRVVEAVE
Ga0370494_007810_2623_2814	3300034130	Untreated Peat Soil	MSWETIRNLVRDEWLILSLLLAWSLAGLAVICERFYALWNLLPKSEAFKDRVIDALEKGDLGKA
Ga0370495_0339980_3_149	3300034257	Untreated Peat Soil	MTWETIRNLVRDEWVILSLLLFWSLAGLTVICERVYALWNVVGKSEAFK