NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F089018

Metagenome Family F089018

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F089018
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 44 residues
Representative Sequence MKINDERIQEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKEE
Number of Associated Samples 75
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 80.73 %
% of genes near scaffold ends (potentially truncated) 14.68 %
% of genes from short scaffolds (< 2000 bps) 82.57 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (55.963 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(49.541 % of family members)
Environment Ontology (ENVO) Unclassified
(82.569 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.743 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1JGI24003J15210_101482992
2JGI24005J15628_102007911
3GOS2262_10304892
4GOS2234_10596212
5JGI25127J35165_10074072
6JGI25127J35165_10301723
7JGI25127J35165_10848882
8JGI25132J35274_11188712
9JGI25128J35275_10281953
10Ga0068515_1225603
11Ga0069134_1618534
12Ga0078893_113132781
13Ga0099675_10114153
14Ga0098038_10257112
15Ga0098038_10386894
16Ga0098038_10754871
17Ga0098038_11519453
18Ga0098038_11681402
19Ga0098038_11847864
20Ga0098038_12765832
21Ga0098037_11214023
22Ga0098037_11700982
23Ga0098042_10081767
24Ga0098042_10515724
25Ga0098042_10697542
26Ga0098048_11052812
27Ga0098054_13433563
28Ga0098060_10495845
29Ga0098060_10699425
30Ga0098041_11179915
31Ga0098036_10549973
32Ga0098036_12538443
33Ga0070747_12513492
34Ga0110931_11623901
35Ga0114904_10508762
36Ga0114910_10606092
37Ga0114996_111833931
38Ga0114909_10315544
39Ga0114915_11336772
40Ga0114932_102380244
41Ga0114932_106078782
42Ga0114933_100725934
43Ga0114933_110349902
44Ga0098043_10265396
45Ga0098059_10767356
46Ga0160423_101584331
47Ga0160423_101779553
48Ga0116836_10411693
49Ga0181433_10859852
50Ga0181418_11833551
51Ga0181413_10465972
52Ga0181423_12551502
53Ga0181576_1000601816
54Ga0181569_106599191
55Ga0181569_108909502
56Ga0181566_105111311
57Ga0181568_100471426
58Ga0211707_10174144
59Ga0211519_10793472
60Ga0211483_101441814
61Ga0211636_100151388
62Ga0211659_100152637
63Ga0211659_100156908
64Ga0211587_103529293
65Ga0211516_102038282
66Ga0211622_103981732
67Ga0211708_102338103
68Ga0211708_102344803
69Ga0211558_102820253
70Ga0211518_100846123
71Ga0211559_105748393
72Ga0211475_104276002
73Ga0211614_102129294
74Ga0224906_11309622
75Ga0255759_100470471
76Ga0207905_10035996
77Ga0208157_10290763
78Ga0208157_10413374
79Ga0208669_10582881
80Ga0208159_10032308
81Ga0208159_10179537
82Ga0208159_10255852
83Ga0208159_10750542
84Ga0208666_10568603
85Ga0208666_10627933
86Ga0208158_11398183
87Ga0209349_10581351
88Ga0209348_10058676
89Ga0209348_10168112
90Ga0209348_10289344
91Ga0209348_10469881
92Ga0209348_10501281
93Ga0209348_11861303
94Ga0209232_12273541
95Ga0209645_10504472
96Ga0208032_11048112
97Ga0208030_10258454
98Ga0208181_10997082
99Ga0183683_100155712
100Ga0183683_10051288
101Ga0183683_10405723
102Ga0185543_10615802
103Ga0183748_100104718
104Ga0183748_10128046
105Ga0310343_109675491
106Ga0302127_103961942
107Ga0314858_056193_635_781
108Ga0314858_093896_372_509
109Ga0314858_139973_2_145
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.81%    β-sheet: 21.43%    Coil/Unstructured: 54.76%
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510152025303540MKINDERIQEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKEESequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
44.0%56.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Deep Ocean
Seawater
Marine
Surface Seawater
Aqueous
Marine Surface Water
Surface Seawater
Sea-Ice Brine
Salt Marsh
Marine
Marine Water
Seawater
Deep Subsurface
49.5%6.4%5.5%20.2%4.6%3.7%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24003J15210_1014829923300001460MarineMINDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEKQKGETKR*
JGI24005J15628_1020079113300001589MarineEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEKQKGETKR*
GOS2262_103048923300001942MarineMEINDERIQEWVDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE*
GOS2234_105962123300001964MarineMEINDERIQEWIDKCPEHDNEILHSDDNGIVVVIRFNNEKEE*
JGI25127J35165_100740723300002482MarineMKINDERIKDWVEKCPEHDHELLHSDDNGIVMVVRFNNTEEEDENK*
JGI25127J35165_103017233300002482MarineMDVNDERIKEWIEKCPEHDNELLHSDDNGIVMVIRFNNQKEED*
JGI25127J35165_108488823300002482MarineMKINDKQISKWLEECPEHDHELLHSDDDGIVIVIRFNNQKEEE*
JGI25132J35274_111887123300002483MarineMLSCKIMEINDKQISKWLEECPEHDHELLHSDDDGIVVVIRFNNQKEED*
JGI25128J35275_102819533300002488MarineMEINDKQISKWLEECPEHDHELLHSDDDGIVVVIRFNNQKEEX*
Ga0068515_12256033300004829Marine WaterMEINDKQISKWLEECPEHDHELLHSDDDGIVVVIRFNNQKEED*
Ga0069134_16185343300004831Surface SeawaterMEINDERIKEWIEKCPEHDNELLHSDDNGIVIVVRFNNEKEEE*
Ga0078893_1131327813300005837Marine Surface WaterMEINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE*
Ga0099675_101141533300006334MarineMKINDERIKEWIDKCPEHDNELLHSDDDGIVIVVRFNNIKEDE*
Ga0098038_102571123300006735MarineMEINDERIQEWIDKCPEHDNELIHSDDNGIVIVVRFNNEKEE*
Ga0098038_103868943300006735MarineMEINDDRIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE*
Ga0098038_107548713300006735MarineWVDKCPEHDNELLHSDDNGIVIVIRFNNEKENE*VEIYI*
Ga0098038_115194533300006735MarineMKINDDRIKEWIDKCPEHDNELLHSDYNGIVIVIRFNNEKEDE*
Ga0098038_116814023300006735MarineMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKEDE*Y*
Ga0098038_118478643300006735MarineMKINDDRIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEPESEE*
Ga0098038_127658323300006735MarineRNIDMEINDERIKEWINKCPEHDNELLHSDDNGIVIVIRFNNQKED*
Ga0098037_112140233300006737MarineMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKENK*
Ga0098037_117009823300006737MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEKDV*
Ga0098042_100817673300006749MarineMKINDERIQEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKENK*
Ga0098042_105157243300006749MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEESNDT*
Ga0098042_106975423300006749MarineMIYDSRIEEWLDRCPEHDNEILHSDADGIVVVIRFNNQKEEDEEKN*
Ga0098048_110528123300006752MarineMEINDERIKEWINKCPEHDNELLHSDDNGIVIVIRFNNQKED*
Ga0098054_134335633300006789MarineEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEEDV*
Ga0098060_104958453300006921MarineMKINDDRIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEESNDT*
Ga0098060_106994253300006921MarineLMEINDERIQEWIDKCPEHDNELIHSDDNGIVIVVRFNNEKEE*
Ga0098041_111799153300006928MarineMEINDEKIQEWIDKCPEHDNELIHSDDNGIVIVVRFNNEKEE*
Ga0098036_105499733300006929MarineMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKEDE*
Ga0098036_125384433300006929MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVVVIRFNN
Ga0070747_125134923300007276AqueousMINDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEEKDE*
Ga0110931_116239013300007963MarineMEINDERIQEWIDKCPEHDNELIHSDDNGIVVVVRFNNEKE
Ga0114904_105087623300008218Deep OceanMEINDERIQEWIDKCPEHDNEILHSDDNGIVVVIRFNNEKENE*
Ga0114910_106060923300008220Deep OceanMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVVRFNNEKEDE*
Ga0114996_1118339313300009173MarineMINDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEEKNE*
Ga0114909_103155443300009414Deep OceanMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVVRFNNIKEED*
Ga0114915_113367723300009428Deep OceanMINDEAIQEWIAKCPEHDHELLHSDADGIVLCIRFPNEPEKESE*
Ga0114932_1023802443300009481Deep SubsurfaceMKINDDRIKEWIDKCPEHDNELLHSDDDGIVIVVRFNNIKEDE*
Ga0114932_1060787823300009481Deep SubsurfaceMKINDERIKDWVEKCPEHDHELLHSDDNGIVMVVRFNNTEEEDEDQ*
Ga0114933_1007259343300009703Deep SubsurfaceMKINDERIKDWIEKCPEHDHELLHSDDNGIVMVVRFNNTEEEDEDQ*
Ga0114933_1103499023300009703Deep SubsurfaceMKINDERIKEWIDKCPEHDNELLHSDDNGIVMVIRFNNEKEDE*
Ga0098043_102653963300010148MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEEDV*
Ga0098059_107673563300010153MarineSKLQGALMEINDEKIQEWIDKCPEHDNELIHSDDNGIVIVVRFNNEKEE*
Ga0160423_1015843313300012920Surface SeawaterMEINDERIQEWVDKCPEHDNEILHSDDNGIVMVIRFNN
Ga0160423_1017795533300012920Surface SeawaterMEINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEE*
Ga0116836_104116933300013181MarineMINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE*
Ga0181433_108598523300017739SeawaterMKINDERIKEWIDKCPEHDNELLHSDDNGIVIVVRFNNEKEDE
Ga0181418_118335513300017740SeawaterMKINDDRIKEWIDKCPEHDNELLHSDDDGIVIVPF
Ga0181413_104659723300017765SeawaterMKINDDRIKEWIDKCPEHDNELLHSDDDGIVIVVRFNNIKEDE
Ga0181423_125515023300017781SeawaterMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVVRFNNEKEDEXKSIHLKD
Ga0181576_10006018163300017985Salt MarshMINDERIQEWIDKCPEHDNEILHSDDNGIDMVIRINNEKEEE
Ga0181569_1065991913300017986Salt MarshMIYDSRIEEWLDKCPEHDNEILHSDDNGIVVVIRFNNEKEEDE
Ga0181569_1089095023300017986Salt MarshMINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEEXYHTK
Ga0181566_1051113113300018426Salt MarshMINDERIQELIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE
Ga0181568_1004714263300018428Salt MarshMINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE
Ga0211707_101741443300020246MarineMINDEKIQEWIDKCPEHDNEILHSDDNGIVVVIRFNNEKEEEXESIHF
Ga0211519_107934723300020266MarineMEINDERIKEWIEKCPEHDNELLHSDDNGIVIVVRFNNEKEEE
Ga0211483_1014418143300020281MarineMEINDERIKEWVDKCPEHDNEILHSDDNGIVMVIRFNNEKEDEXLE
Ga0211636_1001513883300020400MarineMKINDERIQEWVDKCPEHDNELLHSDDNGIVIVVRFNNEKED
Ga0211659_1001526373300020404MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEEDV
Ga0211659_1001569083300020404MarineMKINDERIQEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKENE
Ga0211587_1035292933300020411MarineMEINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEE
Ga0211516_1020382823300020413MarineMKINDERIKEWIEKCPEHDNELLHSDDNGIVIVVRFNNEKEDE
Ga0211622_1039817323300020430MarineMEINDERIQEWVDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE
Ga0211708_1023381033300020436MarineMKINDERIKEWINKCPEHDNELLHSDDNGIVIVIRFNNEKEDE
Ga0211708_1023448033300020436MarineMINDDRIQEWIDKCPEHDNEILHSDDNGIVVVIRFNNEKEKE
Ga0211558_1028202533300020439MarineMEINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEEXHQMK
Ga0211518_1008461233300020440MarineMKINDERIKDWIEKCPEHDHELLHSDDNGIVMVVRFNNTEEEDEDQ
Ga0211559_1057483933300020442MarineWVDKCPEHDNEILHSDDNGIVMVIRFNNEKEEEXYHMK
Ga0211475_1042760023300020468MarineMKINDERIKEWIEKCPEHDNELLHSDDNGIVIVVRFNNEKEEE
Ga0211614_1021292943300020471MarineMEINDERIQKWIDKCPEHDNEILHSDDNGIVVVIRFNNEKEE
Ga0224906_113096223300022074SeawaterMEINDERIKEWIEKCPEHDNELLHSDDNGIVIVIRFNNEKEEE
Ga0255759_1004704713300023178Salt MarshRIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE
Ga0207905_100359963300025048MarineMINDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEKESE
Ga0208157_102907633300025086MarineMEINDDRIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEE
Ga0208157_104133743300025086MarineMKINDDRIKEWIDKCPEHDNELLHSDYNGIVIVIRFNNEKEDE
Ga0208669_105828813300025099MarineMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKEDE
Ga0208159_100323083300025101MarineMKINDERIQEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKENK
Ga0208159_101795373300025101MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEESNDT
Ga0208159_102558523300025101MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVVVIRFNNEKEEDVXYLMMSL
Ga0208159_107505423300025101MarineMIYDSRIEEWLDRCPEHDNEILHSDADGIVVVIRFNNQKEEDEEKN
Ga0208666_105686033300025102MarineMEINDERIQEWIDKCPEHDNELIHSDDNGIVIVVRFNNEKEE
Ga0208666_106279333300025102MarineMEINDKQISKWLEECPEHDHELLHSDDDGIVVVIRFNNQKEED
Ga0208158_113981833300025110MarineMKINDERIQEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKEE
Ga0209349_105813513300025112MarineMKINDERIKEWIDKCPEHDNELLHSDDNGIVIVIRFNNEKEDE
Ga0209348_100586763300025127MarineMKINDERIKDWVEKCPEHDHELLHSDDNGIVMVVRFNNTEEEDENK
Ga0209348_101681123300025127MarineMLSCKIMKINDKQISKWLEECPEHDHELLHSDDDGIVIVIRFNNQKEEE
Ga0209348_102893443300025127MarineMDVNDERIKEWIEKCPEHDNELLHSDDNGIVMVIRFNNQKEED
Ga0209348_104698813300025127MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVMVVRFNNEKENE
Ga0209348_105012813300025127MarineMLSCKIMEINDKQISKWLEECPEHDHELLHSDDDGIVVVIRFNNQKEED
Ga0209348_118613033300025127MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVMVVRFNNEKEN
Ga0209232_122735413300025132MarineMIYDDDMKDWIEKCPHHDNEILHSDDNGIVMCIRFNNEKEEDKP
Ga0209645_105044723300025151MarineMINDERVQEWIDKCPEHDNEILHSDDNGIVVVIRFNNEKEEE
Ga0208032_110481123300025266Deep OceanMINDEAIQEWIAKCPEHDHELLHSDADGIVLCIRFPNEPEKESE
Ga0208030_102584543300025282Deep OceanMKINDDRIKEWIDKCPEHDNELLHSDDNGIVIVVRFNNEKEDE
Ga0208181_109970823300025300Deep OceanMEINDERIQEWIDKCPEHDNEILHSDDNGIVVVIRFNNEKENE
Ga0183683_1001557123300029309MarineMEINDERIKEWINKCPEHDNELLHSDDNGIVIVIRFNNQKED
Ga0183683_100512883300029309MarineMKHKCTGINDERIQEWVDKCPEHDNEILHSDDNGIVVVIRFNNEKEE
Ga0183683_104057233300029309MarineMEINDERIKEWIDKCPEHDNELLHSDDNGIVMVIRFNNEKED
Ga0185543_106158023300029318MarineMEINDERIQEWIDKCPEHDNEILHSDDNGIVMVIRFNNEKEEXXENIHL
Ga0183748_1001047183300029319MarineMEINDERIKEWVDKCPEHDNEILHSDDNGIVMVIRFNNEKEDE
Ga0183748_101280463300029319MarineMLSCKIMKINDKQISKWLEECPEHDHELLHSDDDGIVVVIRFNNQKEED
Ga0310343_1096754913300031785SeawaterMKINDERIKEWIDKCPEHDNELLHSDDNGIVMVVRFNNEKENE
Ga0302127_1039619423300032151MarineMINDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEEKNE
Ga0314858_056193_635_7813300033742Sea-Ice BrineMINDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEKQKGETKR
Ga0314858_093896_372_5093300033742Sea-Ice BrineMINDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEEKKDD
Ga0314858_139973_2_1453300033742Sea-Ice BrineEERGVNDEAIQEWIDKCPEHDHELLHSDADGIVLCIRFPNEPEEKNE


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