Metagenome / Metatranscriptome Family F088953

Basic Information
Family ID	F088953
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	119 residues
Representative Sequence	MTATIQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Number of Associated Samples	102
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.59 %
% of genes near scaffold ends (potentially truncated)	41.28 %
% of genes from short scaffolds (< 2000 bps)	69.72 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (62.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (5.505 % of family members)
Environment Ontology (ENVO)	Unclassified (40.367 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.954 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.09% β-sheet: 15.13% Coil/Unstructured: 53.78%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00313	CSD	14.68
PF13714	PEP_mutase	3.67
PF01066	CDP-OH_P_transf	3.67
PF14588	YjgF_endoribonc	3.67
PF00583	Acetyltransf_1	2.75
PF11528	DUF3224	2.75
PF13432	TPR_16	1.83
PF13376	OmdA	1.83
PF01596	Methyltransf_3	1.83
PF03006	HlyIII	0.92
PF00483	NTP_transferase	0.92
PF12697	Abhydrolase_6	0.92
PF02012	BNR	0.92
PF13520	AA_permease_2	0.92
PF08206	OB_RNB	0.92
PF13371	TPR_9	0.92
PF05163	DinB	0.92
PF07715	Plug	0.92
PF13302	Acetyltransf_3	0.92
PF01165	Ribosomal_S21	0.92
PF07007	LprI	0.92
PF00581	Rhodanese	0.92
PF04199	Cyclase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	3.67
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	3.67
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	3.67
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	1.83
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	1.83
COG0557	Exoribonuclease R	Transcription [K]	0.92
COG0828	Ribosomal protein S21	Translation, ribosomal structure and biogenesis [J]	0.92
COG1158	Transcription termination factor Rho	Transcription [K]	0.92
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG1278	Cold shock protein, CspA family	Transcription [K]	0.92
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.92
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	0.92
COG4776	Exoribonuclease II	Transcription [K]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	20.18 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	20.18 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	15.60 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	15.60 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.59 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	2.75 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.59 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.83 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.92 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.59 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.83 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.92 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig851117	Not Available	844	Open in IMG/M
2228664021\|ICCgaii200_c0883569	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0806634	All Organisms → cellular organisms → Bacteria	2940	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11376171	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105288184	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1167	Open in IMG/M
3300000559\|F14TC_100812202	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	725	Open in IMG/M
3300000789\|JGI1027J11758_12151855	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1142	Open in IMG/M
3300004062\|Ga0055500_10073259	Not Available	724	Open in IMG/M
3300004157\|Ga0062590_102015957	Not Available	599	Open in IMG/M
3300004463\|Ga0063356_100157894	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300004463\|Ga0063356_101904984	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300004643\|Ga0062591_100023087	Not Available	3074	Open in IMG/M
3300004808\|Ga0062381_10126052	Not Available	828	Open in IMG/M
3300005093\|Ga0062594_100006834	All Organisms → cellular organisms → Bacteria	3721	Open in IMG/M
3300005204\|Ga0068997_10054859	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	775	Open in IMG/M
3300005205\|Ga0068999_10006513	Not Available	1419	Open in IMG/M
3300005213\|Ga0068998_10006772	Not Available	1540	Open in IMG/M
3300005295\|Ga0065707_10526783	Not Available	737	Open in IMG/M
3300005333\|Ga0070677_10343703	Not Available	771	Open in IMG/M
3300005339\|Ga0070660_100641549	Not Available	889	Open in IMG/M
3300005343\|Ga0070687_100397483	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	903	Open in IMG/M
3300005345\|Ga0070692_10639896	Not Available	708	Open in IMG/M
3300005354\|Ga0070675_100169416	Not Available	1882	Open in IMG/M
3300005406\|Ga0070703_10032043	Not Available	1594	Open in IMG/M
3300005440\|Ga0070705_100001629	All Organisms → cellular organisms → Bacteria	11744	Open in IMG/M
3300005518\|Ga0070699_100001187	All Organisms → cellular organisms → Bacteria	24088	Open in IMG/M
3300005577\|Ga0068857_100067593	All Organisms → cellular organisms → Bacteria	3181	Open in IMG/M
3300005614\|Ga0068856_101324288	Not Available	735	Open in IMG/M
3300005830\|Ga0074473_11151757	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300005833\|Ga0074472_10644010	Not Available	1689	Open in IMG/M
3300005836\|Ga0074470_11141055	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300006358\|Ga0068871_102311858	Not Available	512	Open in IMG/M
3300006844\|Ga0075428_100047034	All Organisms → cellular organisms → Bacteria	4740	Open in IMG/M
3300006844\|Ga0075428_101199550	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300006847\|Ga0075431_100306761	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300006876\|Ga0079217_10003097	All Organisms → cellular organisms → Bacteria	4736	Open in IMG/M
3300006880\|Ga0075429_100173675	All Organisms → cellular organisms → Bacteria	1888	Open in IMG/M
3300007004\|Ga0079218_10075048	All Organisms → cellular organisms → Bacteria	2219	Open in IMG/M
3300007004\|Ga0079218_10659966	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300009078\|Ga0105106_10618121	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300009092\|Ga0105250_10205876	Not Available	831	Open in IMG/M
3300009093\|Ga0105240_10415059	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1513	Open in IMG/M
3300009148\|Ga0105243_11502137	Not Available	697	Open in IMG/M
3300009162\|Ga0075423_12248976	Not Available	593	Open in IMG/M
3300009167\|Ga0113563_10101813	All Organisms → cellular organisms → Bacteria	2637	Open in IMG/M
3300009174\|Ga0105241_11457952	Not Available	657	Open in IMG/M
3300009545\|Ga0105237_11524324	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	675	Open in IMG/M
3300009551\|Ga0105238_10131203	All Organisms → cellular organisms → Bacteria	2484	Open in IMG/M
3300009553\|Ga0105249_12197947	Not Available	625	Open in IMG/M
3300009873\|Ga0131077_10000474	All Organisms → cellular organisms → Bacteria	111921	Open in IMG/M
3300011428\|Ga0137456_1128091	Not Available	673	Open in IMG/M
3300011429\|Ga0137455_1029715	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300011433\|Ga0137443_1138414	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300012910\|Ga0157308_10092149	Not Available	878	Open in IMG/M
3300013100\|Ga0157373_10271976	Not Available	1199	Open in IMG/M
3300014308\|Ga0075354_1004650	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1775	Open in IMG/M
3300014308\|Ga0075354_1125028	Not Available	563	Open in IMG/M
3300014321\|Ga0075353_1001763	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2825	Open in IMG/M
3300014324\|Ga0075352_1140568	Not Available	670	Open in IMG/M
3300014325\|Ga0163163_10398277	All Organisms → cellular organisms → Bacteria	1435	Open in IMG/M
3300015371\|Ga0132258_11104300	Not Available	2005	Open in IMG/M
3300015372\|Ga0132256_103194104	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	551	Open in IMG/M
3300015374\|Ga0132255_100171668	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M
3300015374\|Ga0132255_105281866	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	547	Open in IMG/M
3300018059\|Ga0184615_10005888	All Organisms → cellular organisms → Bacteria	6606	Open in IMG/M
3300018422\|Ga0190265_12138865	Not Available	663	Open in IMG/M
3300019212\|Ga0180106_1040858	Not Available	534	Open in IMG/M
3300019361\|Ga0173482_10064920	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	1231	Open in IMG/M
3300022204\|Ga0224496_10078244	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300022213\|Ga0224500_10028981	Not Available	2309	Open in IMG/M
3300022737\|Ga0247747_1042817	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	554	Open in IMG/M
3300022901\|Ga0247788_1061005	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	711	Open in IMG/M
3300025315\|Ga0207697_10213708	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300025908\|Ga0207643_10119501	All Organisms → cellular organisms → Bacteria	1560	Open in IMG/M
3300025917\|Ga0207660_11098411	Not Available	648	Open in IMG/M
3300025918\|Ga0207662_10536283	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	809	Open in IMG/M
3300025922\|Ga0207646_10005872	All Organisms → cellular organisms → Bacteria	12820	Open in IMG/M
3300025926\|Ga0207659_10200987	All Organisms → cellular organisms → Bacteria	1592	Open in IMG/M
3300025931\|Ga0207644_10772036	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	803	Open in IMG/M
3300025938\|Ga0207704_10005497	All Organisms → cellular organisms → Bacteria	5842	Open in IMG/M
3300025979\|Ga0210078_1003824	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1688	Open in IMG/M
3300026035\|Ga0207703_11284393	Not Available	704	Open in IMG/M
3300026041\|Ga0207639_10162808	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300026048\|Ga0208915_1021755	Not Available	586	Open in IMG/M
3300026078\|Ga0207702_11076525	Not Available	798	Open in IMG/M
3300026116\|Ga0207674_10037929	All Organisms → cellular organisms → Bacteria	5006	Open in IMG/M
3300026142\|Ga0207698_11327566	Not Available	734	Open in IMG/M
3300026535\|Ga0256867_10002284	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	8241	Open in IMG/M
3300027526\|Ga0209968_1058874	Not Available	675	Open in IMG/M
3300027637\|Ga0209818_1000688	All Organisms → cellular organisms → Bacteria	7287	Open in IMG/M
3300027695\|Ga0209966_1004182	All Organisms → cellular organisms → Bacteria	2441	Open in IMG/M
3300027778\|Ga0209464_10308965	Not Available	576	Open in IMG/M
3300027886\|Ga0209486_10003356	All Organisms → cellular organisms → Bacteria	6866	Open in IMG/M
3300027886\|Ga0209486_10030029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2615	Open in IMG/M
3300027909\|Ga0209382_10806976	All Organisms → cellular organisms → Bacteria	998	Open in IMG/M
3300027979\|Ga0209705_10583800	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300028809\|Ga0247824_10528731	Not Available	699	Open in IMG/M
3300028812\|Ga0247825_10054821	All Organisms → cellular organisms → Bacteria	2652	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1000557	All Organisms → cellular organisms → Bacteria	5961	Open in IMG/M
3300031229\|Ga0299913_10195791	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	2000	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1007927	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2529	Open in IMG/M
3300031740\|Ga0307468_101450017	Not Available	633	Open in IMG/M
3300031873\|Ga0315297_10025027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4319	Open in IMG/M
3300031997\|Ga0315278_10062388	All Organisms → cellular organisms → Bacteria → Proteobacteria	3682	Open in IMG/M
3300032002\|Ga0307416_100531314	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300032012\|Ga0310902_10409079	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	865	Open in IMG/M
3300033433\|Ga0326726_10972768	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	824	Open in IMG/M
3300033433\|Ga0326726_11069921	Not Available	784	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.39%
Host-Associated	Host-Associated	36.70%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	42.20%
Plants	Host-Associated → Plants	36.70%
Aquatic	Environmental → Aquatic	20.18%
Wastewater	Engineered → Wastewater	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.60%
Freshwater	Environmental → Aquatic → Freshwater	7.34%
Marine	Environmental → Aquatic → Marine	6.42%
Sediment	Environmental → Aquatic → Sediment	6.42%
Peat	Environmental → Terrestrial → Peat	1.83%
Roots	Host-Associated → Plants → Roots	1.83%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.84%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.42%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.50%
Wetlands	Environmental → Aquatic → Marine → Wetlands	4.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Lake	Environmental → Aquatic → Freshwater → Lake	1.83%
Sediment	Environmental → Aquatic → Marine → Sediment	1.83%
Sand	Environmental → Terrestrial → Soil → Sand	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.83%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.01%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.34%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	4.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.83%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.50%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.50%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	4.59%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	4.59%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.67%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.75%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.83%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.83%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	1.83%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	1.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.83%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.83%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004062	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005204	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300011428	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2	Environmental	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300011433	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019212	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT25_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300022204	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025979	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026048	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_16456700	2124908045	Soil	MSTLTQVEKRQRATAFPPASGAAPACGPLDVQWASSFDRLCFMLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF
ICCgaii200_08835692	2228664021	Soil	MTTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
ICChiseqgaiiDRAFT_08066342	3300000033	Soil	MTTLTQAEKRQRATAFPPVSGAAPACGPXXVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF*
ICChiseqgaiiFebDRAFT_113761711	3300000363	Soil	KRQRATAFPPVSGAAPACGPLSVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF*
INPhiseqgaiiFebDRAFT_1052881842	3300000364	Soil	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRAEKYVYQLPPVLPAF*
F14TC_1008122021	3300000559	Soil	VTAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALIAGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLNGLTRAEKYVYQLAPVVPAF*
JGI1027J11758_121518552	3300000789	Soil	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVXAVLFFAQDRLAKEGRLSGLKRAEKYVYQLPPVLPAF*
Ga0055500_100732591	3300004062	Natural And Restored Wetlands	MGTSIQDQKRQRASAFPSAQGATPGCGVLDVQFDSPFDRLCYLISAPLKNSRRYATLLAELMAGSGCTEEELLAHGHKVRAYLFFAEDRLRKDGKLDGLTGKEKYPYRLPPVTPAF*
Ga0062590_1020159572	3300004157	Soil	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRS
Ga0063356_1001578942	3300004463	Arabidopsis Thaliana Rhizosphere	MSTLTQAEKRQRATAFPPVSGAAPACGPLSVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF*
Ga0063356_1019049841	3300004463	Arabidopsis Thaliana Rhizosphere	MSTLTQVEKRQRATAFPPASGAAPACGPLDVQWASPFDRLCFMLSRPDLATRNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGALDGLTGRQKYPYQLPEVSPAF*
Ga0062591_1000230871	3300004643	Soil	MQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF*
Ga0062381_101260521	3300004808	Wetland Sediment	LYLGQAEVLFGAVFSVPQSAQGAHMDTSTQAQKRQRATAFPSVQGATPGCGVLDVQFDSPFDRLCFLVSAPVKNSRRYAAMLAELMAGSGCTEEEIQAHGLKVRAYLFFAEDRLRKEGKLDGLTGKAKYPYRLPPVTPAF*
Ga0062594_1000068347	3300005093	Soil	AFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF*
Ga0068997_100548591	3300005204	Natural And Restored Wetlands	QQGAKLLPGVPSSGGPPAQGVLMDTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEEEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKWTYRLPAVAPAF*
Ga0068999_100065131	3300005205	Natural And Restored Wetlands	MGTSIQDQKRQRASAFPSVQGATPGCGVLDVQFESPFDRLCYLISAPLKNSRRYTTLLAELMTGSGCTEEELLAHGHKVRAYLFFAEDRLRKDGKLDGLTGKEKYPYRLPPVTPAF*
Ga0068998_100067722	3300005213	Natural And Restored Wetlands	MDTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEEEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKWTYRLPAVAPAF*
Ga0065707_105267832	3300005295	Switchgrass Rhizosphere	MSTLTQVEKRQRATAFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF*
Ga0070677_103437031	3300005333	Miscanthus Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVP
Ga0070660_1006415492	3300005339	Corn Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEK
Ga0070687_1003974833	3300005343	Switchgrass Rhizosphere	TDDLKPPMNARGGRQVRFPVSPGTPVSPFRRAIVQGSMMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF*
Ga0070692_106398961	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF*
Ga0070675_1001694162	3300005354	Miscanthus Rhizosphere	MTASIQEQKRKRATAFPPATGAAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYTKLLDALMSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRSEKYVYQLAPVLPAF*
Ga0070703_100320433	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLNGLKRTEKYVYQLPPVLPAF*
Ga0070705_1000016291	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	QEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF*
Ga0070699_10000118736	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MSTLTQDEKRQRATAFPPASGAAPACGPLEVHWASPFDRLCFMLSRPDLATRNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF*
Ga0068857_1000675937	3300005577	Corn Rhizosphere	ATVQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALVAGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRTEKYVYQLAPVVPAF*
Ga0068856_1013242881	3300005614	Corn Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVL
Ga0074473_111517572	3300005830	Sediment (Intertidal)	MESSTQAQKRQRATAFPPVTGPAPGCGLLEVEWGSPFDRLCFLISAPDLAVKNNRRYIKLLAEITAGSGCTETEILAHGNKVRAYLFFAQDRLKREGQLEHLTGREKFSYQLPPVTPAF*
Ga0074472_106440102	3300005833	Sediment (Intertidal)	VPTANQAQKRQRAIAFPPATGPAPTCGLLEVQWASPFDRQCFLLSSPDLALKNSRRYAKLLAELMAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGRLAGLTGKAKYTYELPQVALAF*
Ga0074470_111410553	3300005836	Sediment (Intertidal)	MESSTQAQKRQRATAFPPVTGPAPGCGLLEVEWGSPFDRLCFLISAPDLAVKNNRRYTKLLAEITAGSGCTETEILAHGNKVRAYLFFAQDRLKREGQLDHLTGREKFSYQLPPVTPAF*
Ga0068871_1023118581	3300006358	Miscanthus Rhizosphere	QVRFPVSPGTPVSPFRRAIVQGSMMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF*
Ga0075428_1000470343	3300006844	Populus Rhizosphere	MSTLTQLEKRQRATAFPPASGAAPACGPLDVQWASPFDRLCFMLSRPDLATRNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGALDGLTGRQKYPYQLPEVSPAF*
Ga0075428_1011995502	3300006844	Populus Rhizosphere	TMTTLTQAEKRQRATAFPPVTGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0075431_1003067612	3300006847	Populus Rhizosphere	VTVTTQALKRQRASEFPRVEGTAPTCGALSVQWDSPFDRQCFVLSKPDLSVKNPKMYAKVLAELIAGSGCTEKELLAHGNKVRAYLFFAEDRLAKKGLLATLGAREKYAYQLPQVIPAF*
Ga0079217_100030973	3300006876	Agricultural Soil	MSTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF*
Ga0075429_1001736752	3300006880	Populus Rhizosphere	MTTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF*
Ga0079218_100750481	3300007004	Agricultural Soil	RQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPVKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF*
Ga0079218_106599662	3300007004	Agricultural Soil	RQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF*
Ga0105106_106181212	3300009078	Freshwater Sediment	MTTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTTGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGA
Ga0105250_102058761	3300009092	Switchgrass Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRTEKYVYQLAPVLPAF
Ga0105240_104150593	3300009093	Corn Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYTKLLDALMSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0105243_115021371	3300009148	Miscanthus Rhizosphere	DPAIFQGDANLRDPGVVFFSGFSAQGAHMSTLTQVEKRQRATAFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF*
Ga0075423_122489761	3300009162	Populus Rhizosphere	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVTGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRTEKYVYQLAPVLPAF*
Ga0113563_101018132	3300009167	Freshwater Wetlands	MGTSAQAQKRQRATAFPPVNDMTQTCGLLDVRWDSQFDRLCFQISAPDLAQKNNRRYSKLLAELTAGSGCTEEEILAHGNKVRAYIYFAQERLKREGHLDQLKGKEKYAYQLPPVIPAF*
Ga0105241_114579521	3300009174	Corn Rhizosphere	MMTASIQEQKRKRATAFPPATGAAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLSFAQDRLTKEGRLSGLKRSEKYVYQ
Ga0105237_115243242	3300009545	Corn Rhizosphere	MTATIQEQKRKRATAFPPATGAAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF*
Ga0105238_101312034	3300009551	Corn Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLNGLKRTEKYVYQLPPVLPAF
Ga0105249_121979471	3300009553	Switchgrass Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLS
Ga0131077_1000047414	3300009873	Wastewater	MSSRRPLSSAGHPRRIVTLTTTQDQKRRRAVSFPPATGAAPSSGLLDVQWDSPFDRLCFQVSSPDLAIKNKARYTKLLAEIMAGSGCTEEEIIAHGNKVRAVLFFAQERLAREGRLAGLSGREKYPYRLTPVTPAF*
Ga0137456_11280911	3300011428	Soil	ANLRDPGVVFFSGFSAQGAHMSTLTQVEKRQRATAFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGALDGLTGRQKYPYSLREVSPAF*
Ga0137455_10297153	3300011429	Soil	MSTLTQVEKRQRATAFPPASGAAPACGPLDVQWASSFDRLCFMLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF*
Ga0137443_11384141	3300011433	Soil	MSTLTQVEKRQRATAFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGALDGLTGRQKYPYSLREVSPAF*
Ga0157308_100921491	3300012910	Soil	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSE
Ga0157373_102719763	3300013100	Corn Rhizosphere	RRAIVQGSMMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF*
Ga0075354_10046503	3300014308	Natural And Restored Wetlands	MHTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEEEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKWTYRLPAVAPAF*
Ga0075354_11250281	3300014308	Natural And Restored Wetlands	FPSAQGATPGCGVLDVQFESPFDRLCYLISAPLKNSRRYTTLLAELMTGSGCTEEELLAHGHKVRAYLFFAEDRLRKDGKLDGLTGKEKYPYRLPPVTPAF*
Ga0075353_10017633	3300014321	Natural And Restored Wetlands	MDTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEDEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKRTYRLPAVAPAF*
Ga0075352_11405681	3300014324	Natural And Restored Wetlands	MDTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEDEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKWTYRLPAVAPAF*
Ga0163163_103982773	3300014325	Switchgrass Rhizosphere	MMTATVQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALVAGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRTEEYVYQLAPVVPAF
Ga0132258_111043001	3300015371	Arabidopsis Rhizosphere	MQGSTMTASIQEQKRKRVTAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALVSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGLLSGLKRTEKYVYQLAPVVPAF*
Ga0132256_1031941042	3300015372	Arabidopsis Rhizosphere	SPFRRAIVQGSMLTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVLPAF*
Ga0132255_1001716684	3300015374	Arabidopsis Rhizosphere	MMTASIQEQKRKRATAFPPATGAAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALVSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGLLSGLKRTEKYVYQLAPVVPAF
Ga0132255_1052818662	3300015374	Arabidopsis Rhizosphere	AAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYTKLLDALMSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRSEKYVYQLAPVLPAF*
Ga0184615_100058888	3300018059	Groundwater Sediment	MSTLTQVEKRRRATAFPPASGAAPACGPLDVQWSSPFDRLCFMLSRPDLATRNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLSKQGALDGLTGRQKYPYQLPEVSPAF
Ga0190265_121388652	3300018422	Soil	MSTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTTGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0180106_10408581	3300019212	Groundwater Sediment	RQRATAFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGALDGLTGRQKYPYSLREVAPAF
Ga0173482_100649202	3300019361	Soil	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0224496_100782443	3300022204	Sediment	MESSTQSQKRQRATAFPPVTGPAPGCGLLEVEWGSPFDRLCFLISAPDLAVKNNRRYTKLLAEITAGSGCTETEILAHGNKVRAYLFFAQDRLKREGQLDHLTGREKFSYQLPPVTPAF
Ga0224500_100289813	3300022213	Sediment	METSTQAQKRQRATAFPSAEGATPACGMLEVQFESPFDRLCYLVSAPLKNSRRYATVLAELMAGSGCTEEELLAHGHKVRAYLFFAEDRLRKEGKLDGLSGKEKFPYRLPPVTPAF
Ga0247747_10428171	3300022737	Soil	PVSPFRRAIVQGSMMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0247792_10841431	3300022880	Soil	PSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0247788_10610052	3300022901	Soil	KPPMNARGGRQVRFPVSPGTPVSPFRRAIVQGSMMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0207697_102137081	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLNGLKRTEKYVYQLPPVLPAF
Ga0207643_101195012	3300025908	Miscanthus Rhizosphere	MMTATVQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALVAGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRTEKYVYQLAPVVPAF
Ga0207660_110984112	3300025917	Corn Rhizosphere	DPGVVFFSGFSAQGAHMSTLTQVEKRQRATAFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF
Ga0207662_105362832	3300025918	Switchgrass Rhizosphere	MTATIQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0207646_100058724	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSTLTQVEKRQRATAFPPASGAAPSCGPLDVQWASSFDRLCFQLSRPDLATKNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKQGALDGLTGRQKYPYQLPEVSPAF
Ga0207659_102009872	3300025926	Miscanthus Rhizosphere	MMTASIQEQKRKRATAFPPATGAAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYTKLLDALMSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRSEKYVYQLAPVLPAF
Ga0207644_107720361	3300025931	Switchgrass Rhizosphere	SPFRRAIVQGSMMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0207704_100054971	3300025938	Miscanthus Rhizosphere	LFPFRRAIRAGTTMTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0210078_10038242	3300025979	Natural And Restored Wetlands	MDTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEEEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKWTYRLPAVAPAF
Ga0207703_112843931	3300026035	Switchgrass Rhizosphere	MMTASIQEQKRKRATAFPPATGAAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYTKLLDALMSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLS
Ga0207639_101628083	3300026041	Corn Rhizosphere	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVVPAF
Ga0208915_10217551	3300026048	Natural And Restored Wetlands	MDTSTQAQKRQRATTFPSARGAAPTCGLLEVQWDSPFDRLCFLVSAPDLALKNSRRYTTLLAELIAGSGCTEDEILAHGHKVRAYLFFAQDRLSKDGQLDGLTGKEKRTYRLPAVAPAF
Ga0207702_110765251	3300026078	Corn Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLTKEGRLSGLKRSEKYVYQLAPVLPAF
Ga0207674_1003792911	3300026116	Corn Rhizosphere	ATVQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALVAGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRTEKYVYQLAPVVPAF
Ga0207698_113275661	3300026142	Corn Rhizosphere	MMTASMQEQKRKRATAFPPATGAAPSCGLLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLEALVSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRSEKYVYQLAPVLPAF
Ga0256867_100022841	3300026535	Soil	VTVATQALKRQRASEFPPVDGTAPTCGALSVQWDSPFDRQCFVLSRPDLSQKNPRLYTKVLAELIAGSGCTEAELLAHGNKVRAYLFFAEDRLAKKGLLEGLGSREKYAYQLPQVIPAF
Ga0209968_10588742	3300027526	Arabidopsis Thaliana Rhizosphere	MSTLTQAEKRQRATAFPPVSGAAPACGPLSVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0209818_100068810	3300027637	Agricultural Soil	MSTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0209966_10041822	3300027695	Arabidopsis Thaliana Rhizosphere	MSTLTQAEKRQRATAFPPVSGAAPACGPLSVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTVGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0209464_103089652	3300027778	Wetland Sediment	LYLGQAEVLFGAVFSVPQSAQGAHMDTSTQAQKRQRATAFPSVQGATPGCGVLDVQFDSPFDRLCFLVSAPVKNSRRYAAMLAELMAGSGCTEEEIQAHGLKVRAYLFFAEDRLRKEGKLDGLTGKAKYPYRLPPVTPAF
Ga0209486_1000335612	3300027886	Agricultural Soil	KRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0209486_100300291	3300027886	Agricultural Soil	KRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPVKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0209382_108069762	3300027909	Populus Rhizosphere	MSTLTQLEKRQRATAFPPASGAAPACGPLDVQWASPFDRLCFMLSRPDLATRNSRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGALDGLTGRQKYPYQLP
Ga0209705_105838002	3300027979	Freshwater Sediment	MTTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTTGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGAL
Ga0247824_105287312	3300028809	Soil	MTTLTQAEKRQRATAFPPVSGATPACGPLNVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0247825_100548212	3300028812	Soil	MTTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGALDGLTGREKYPYQLSEVSPAF
(restricted) Ga0255311_10005577	3300031150	Sandy Soil	MTTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0299913_101957912	3300031229	Soil	VTVATQALKRQRASEFPAVEGTAPTCGALSVQWDSPFDRQCFVLSRPDLSQKNPRLYAKVLAELIAGSGCTEAELLAHGNKVRAYLFFAEDRLAKKGLLEGLGSREKYVYQLPQVIPAF
(restricted) Ga0255312_10079275	3300031248	Sandy Soil	TQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLATKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYPYQLSEVSPAF
Ga0307468_1014500171	3300031740	Hardwood Forest Soil	MTATIQEQKRKRATAFPPATGAAPSCGMLDVQWESSFDRLCYVISGPDLAIKNSNRYAKLLDALVAGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGL
Ga0315297_100250273	3300031873	Sediment	MESSVQEQKRQRASAFPSAQGATPGCGVLDVQFDSPFDRLCYLVSAPLKNSRRYTTLLAELMAGSGCTEEELLAHGHKVRAYLFFAEDRLRKDGKLDGLTGKGKYPYRLPPVTPAF
Ga0315278_100623882	3300031997	Sediment	METLTQTQKRQRATAFPPANGAPPACGLLEVSWGSPFDRLCFLVAAPDLAVKNNRRYTKLLAELMAGSGCTEEEVLAHGHKVRAYLYFAQERLKREGQLERLTGKEKYSYQLPPVAHAF
Ga0307416_1005313141	3300032002	Rhizosphere	MTTLTQAEKRQRATAFPPVSGAAPACGPLNVQWSSPFDRLCFMLSRPNLPTKNPRGYAKLLAELTAGSGCTEEELLAHGNKVRAYLFFAEDRLTKEGVLDGLTGREKYP
Ga0310902_104090792	3300032012	Soil	MQGSMMTASIQEQKRKRATAFPPATGAAPACGMLDVQWESSFDRLCYVISGPDLAIKNSNRYTKLLDALMSGSGCTEEEILAHGNKVRAVLFFAQDRLAKEGRLSGLKRSEKYVYQLAPVLPAF
Ga0326726_109727683	3300033433	Peat Soil	RRSPCGRLSGQGLLMTSSVQEQKRKRASTFPPVTGATPACGLLDVQWDSPFDRLCFLVSAPDLALKNSSRYGKLLEEAMSGSGCTEEEILAHGNKVRAYLFFAQDRLTKEGRLGGLKGSEKYVYQLVPVAPAF
Ga0326726_110699211	3300033433	Peat Soil	MSSTTQAQKRERATAFPAPNGAAPACGLLDVRWDSAFDRLCYLISAPDLALKNNRRYTKLLAELTAGSGCTEEEIIAHGNKVRAYLFFAQERLKREGHLDQLT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters