NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F088862

Metagenome / Metatranscriptome Family F088862

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088862
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 48 residues
Representative Sequence ALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Number of Associated Samples 100
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 9.17 %
% of genes near scaffold ends (potentially truncated) 88.07 %
% of genes from short scaffolds (< 2000 bps) 88.07 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (77.982 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(32.110 % of family members)
Environment Ontology (ENVO) Unclassified
(28.440 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(43.119 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.
14ZMR_02569940
2JGI10216J12902_1091055492
3Ga0062591_1015978622
4Ga0066822_10056851
5Ga0066678_102769292
6Ga0066388_1038425692
7Ga0070682_1000365723
8Ga0070675_1000840763
9Ga0008090_148437522
10Ga0070709_103785551
11Ga0070709_115878052
12Ga0070710_100307901
13Ga0070706_1002216301
14Ga0068857_1018653021
15Ga0068866_103364652
16Ga0074055_116424411
17Ga0074057_100335861
18Ga0079222_115063822
19Ga0075434_1015036061
20Ga0099794_104134741
21Ga0099827_104492032
22Ga0105248_101088031
23Ga0105249_117883791
24Ga0126374_108694872
25Ga0116223_105804172
26Ga0126384_104356672
27Ga0126382_121438412
28Ga0126373_116172021
29Ga0136449_1001848892
30Ga0136449_1035552082
31Ga0134126_122905532
32Ga0105246_119689211
33Ga0137383_107725861
34Ga0137382_106833662
35Ga0137379_100429732
36Ga0137378_118339391
37Ga0157336_10052552
38Ga0137413_110148601
39Ga0126369_123288241
40Ga0157377_100336091
41Ga0157377_115068442
42Ga0134073_103295431
43Ga0182033_117183462
44Ga0182035_119457032
45Ga0182034_115563282
46Ga0182038_112029642
47Ga0187819_100114486
48Ga0179594_102445391
49Ga0179592_102985911
50Ga0210403_114847462
51Ga0210405_110078422
52Ga0210385_115118791
53Ga0210389_109950121
54Ga0210387_109297281
55Ga0210394_102404911
56Ga0210402_109525242
57Ga0210402_110373401
58Ga0210409_104379911
59Ga0247670_10056613
60Ga0207713_12402602
61Ga0207692_101430481
62Ga0207699_100360841
63Ga0207699_108215252
64Ga0207684_116766881
65Ga0207664_117872022
66Ga0207665_103930451
67Ga0209801_13080651
68Ga0257159_10554372
69Ga0209218_11421401
70Ga0209073_102373322
71Ga0209283_103050102
72Ga0137415_106523862
73Ga0307323_102832101
74Ga0307305_100977721
75Ga0307312_111750422
76Ga0222749_102630382
77Ga0310038_104112741
78Ga0318516_103760142
79Ga0318516_106022541
80Ga0318573_100303153
81Ga0318492_106552771
82Ga0318509_104954801
83Ga0318521_105240991
84Ga0318546_105827571
85Ga0318566_103239732
86Ga0318566_105212632
87Ga0318552_103372071
88Ga0318499_103673551
89Ga0318511_105132032
90Ga0306923_111315051
91Ga0310913_110971702
92Ga0310909_103696361
93Ga0310909_104724332
94Ga0318530_104031521
95Ga0306922_101993883
96Ga0306922_118526272
97Ga0318563_106443742
98Ga0318570_102686551
99Ga0318513_102786021
100Ga0318514_101889492
101Ga0318524_100180131
102Ga0318540_100606133
103Ga0307470_101564871
104Ga0306920_1009907761
105Ga0335082_114731862
106Ga0335080_111034581
107Ga0318519_105986853
108Ga0310811_105944681
109Ga0373958_0127454_498_620
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.44%    β-sheet: 0.00%    Coil/Unstructured: 55.56%
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51015202530354045ALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPKSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
78.0%22.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Peatlands Soil
Soil
Agricultural Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Agricultural Soil
Corn Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Miscanthus Rhizosphere
Rhizosphere Soil
Miscanthus Rhizosphere
Switchgrass, Maize And Mischanthus Litter
Tropical Rainforest Soil
3.7%10.1%4.6%3.7%32.1%7.3%8.3%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
4ZMR_025699402170459017Switchgrass, Maize And Mischanthus LitterADQIEPCTDGLIPIRARILVRAGVPWPQAFALSRYWLGPK
JGI10216J12902_10910554923300000956SoilAADQIEPCTDGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0062591_10159786223300004643SoilALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0066822_100568513300005173SoilAADQIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0066678_1027692923300005181SoilLALNAAAEQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0066388_10384256923300005332Tropical Forest SoilGCDPFNFGDFVWLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK*
Ga0070682_10003657233300005337Corn RhizosphereAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0070675_10008407633300005354Miscanthus RhizosphereDQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0008090_1484375223300005363Tropical Rainforest SoilADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK*
Ga0070709_1037855513300005434Corn, Switchgrass And Miscanthus RhizosphereLRRALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0070709_1158780523300005434Corn, Switchgrass And Miscanthus RhizosphereRLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0070710_1003079013300005437Corn, Switchgrass And Miscanthus RhizosphereALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0070706_10022163013300005467Corn, Switchgrass And Miscanthus RhizosphereDFGDFVRIALNAAADQIEPCTDGPEGLVPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0068857_10186530213300005577Corn RhizosphereRRALHAAADQIEPQPDGLAPIRARILTSAGVPWKQAFAISQYWIHDA*
Ga0068866_1033646523300005718Miscanthus RhizosphereDQIEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0074055_1164244113300006573SoilGDFVRIALNTAADQIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0074057_1003358613300006605SoilQIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK*
Ga0079222_1150638223300006755Agricultural SoilFGEYLRRALHAAADQVEPQPDGLAPIRARILTSAGVPWKQAFAISQYWIHDA*
Ga0075434_10150360613300006871Populus RhizosphereGDFVRLALNAAADQIEPCTDGLIPIRARILVRAGVPWPQAFALSRYWLGPK*
Ga0099794_1041347413300007265Vadose Zone SoilLNFGDIVRLALYAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0099827_1044920323300009090Vadose Zone SoilLNFAEFVRLALHAAADQVEPRADGLAPIRARILAGAGVPWPQAFAISQYWLGPK*
Ga0105248_1010880313300009177Switchgrass RhizosphereEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0105249_1178837913300009553Switchgrass RhizosphereADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0126374_1086948723300009792Tropical Forest SoilVWLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK*
Ga0116223_1058041723300009839Peatlands SoilLNFAEFVRLALHAAADQVEPRADGLAPIRARILAAAGVPWPRALAISQYWLGPQ*
Ga0126384_1043566723300010046Tropical Forest SoilDGHEGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0126382_1214384123300010047Tropical Forest SoilFVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0126373_1161720213300010048Tropical Forest SoilVFAEFLRRALHTAADQVEPCADGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0136449_10018488923300010379Peatlands SoilLSFADFVRLALYAAADQLEPRGDGLAPIRAKILAAAGVPWAKALAISRYWLGPK*
Ga0136449_10355520823300010379Peatlands SoilLSFAEFLRLALHAAADQVEPRADGLAPIRARILAAAGVPWAKALAISRYWLGPK*
Ga0134126_1229055323300010396Terrestrial SoilVSPPVFAEFLRRALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK*
Ga0105246_1196892113300011119Miscanthus RhizosphereMDFGEYLRRALHAAADQVEPQPDGLAPIRARILTSAGVPWKQAFAISQYWIHDA*
Ga0137383_1077258613300012199Vadose Zone SoilLGDFVRLALNAAAEQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0137382_1068336623300012200Vadose Zone SoilLGDFVRLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0137379_1004297323300012209Vadose Zone SoilLNFAEFVRLALHTAADQVEPRPDGLAPIRARILAGAGVPWRQAFAISQYWLGPK*
Ga0137378_1183393913300012210Vadose Zone SoilEPCADGLVSIRARILAGSGVPWPQALALSLYWLDPKRKS*
Ga0157336_100525523300012477Arabidopsis RhizosphereAADQIEPCTDGPEGLVPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0137413_1101486013300012924Vadose Zone SoilARGRDFGDFVRLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWPGPK*
Ga0126369_1232882413300012971Tropical Forest SoilVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK*
Ga0157377_1003360913300014745Miscanthus RhizosphereNAAADQIEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK*
Ga0157377_1150684423300014745Miscanthus RhizosphereFVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0134073_1032954313300015356Grasslands SoilLNAAADQIEPCTDGLVPIRARILARAGVPWPQAFALSRYWLGPK*
Ga0182033_1171834623300016319SoilGEFVRVALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAVSRYWLGPK
Ga0182035_1194570323300016341SoilGDFVRLALQSAADQVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0182034_1155632823300016371SoilGDFVRLALHAAADQVEPCVDGPDGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0182038_1120296423300016445SoilVRGRDFGDFVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0187819_1001144863300017943Freshwater SedimentVRLALQAAADQVEPRADGLVPIRARILAAAGVPWPKALAISQYWLGPP
Ga0179594_1024453913300020170Vadose Zone SoilAADQIEPCADGPDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0179592_1029859113300020199Vadose Zone SoilAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210403_1148474623300020580SoilALHAAADQIEPCSDGLEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210405_1100784223300021171SoilGDIVRLALHAAADQIEPCSDGLEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210385_1151187913300021402SoilYALQAAADQVDPHADVLVPIRARILAGAGIPWPQAFAISLNWIHDA
Ga0210389_1099501213300021404SoilDQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0210387_1092972813300021405SoilALRAATDQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210394_1024049113300021420SoilDFGDFVRLALNTAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210402_1095252423300021478SoilLHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK
Ga0210402_1103734013300021478SoilLHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0210409_1043799113300021559SoilPCSDGLEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0247670_100566133300024283SoilFVYRALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0207713_124026023300025735Switchgrass RhizosphereARGRDFGDFVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0207692_1014304813300025898Corn, Switchgrass And Miscanthus RhizosphereEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0207699_1003608413300025906Corn, Switchgrass And Miscanthus RhizosphereDFVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0207699_1082152523300025906Corn, Switchgrass And Miscanthus RhizosphereARGRDFGDFVRLALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0207684_1167668813300025910Corn, Switchgrass And Miscanthus RhizosphereDFGDFVRIALNAAADQIEPCTDGPEGLVPIRARILARAGVPWPQAFAMSRYWLGPK
Ga0207664_1178720223300025929Agricultural SoilALNAAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0207665_1039304513300025939Corn, Switchgrass And Miscanthus RhizosphereMSPPVFAELLRRALHAAADQVEPCTDGLAPIRARILARAGVPWPQALAISRYWLGPK
Ga0209801_130806513300026326SoilLALNAAAEQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0257159_105543723300026494SoilAADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0209218_114214013300027505Forest SoilVRYALQAAADQVEPHADALVPIRARILAGAGIPWPQAFAISLNWIHDA
Ga0209073_1023733223300027765Agricultural SoilALNAAADQVEPCADGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0209283_1030501023300027875Vadose Zone SoilADFVRQAMHSAVDQVEPRADGLVSIRARILAGSGVPWPQALALSLYWLGPKHPAGRGGVAKG
Ga0137415_1065238623300028536Vadose Zone SoilRDFGEFVRLALNAAADQIEPCTDGPEGLIPIRARILARAGVPWPQAFAMSRYWLGPK
Ga0307323_1028321013300028787SoilVRLALNTAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0307305_1009777213300028807SoilLNTATDQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0307312_1117504223300028828SoilLNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0222749_1026303823300029636SoilADQVEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0310038_1041127413300030707Peatlands SoilVEPRGDGLAPIRAKILAAAGVPWAKALAISRYWLGPK
Ga0318516_1037601423300031543SoilFGDFVRLALHAAADQVEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0318516_1060225413300031543SoilQVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318573_1003031533300031564SoilSPSNPPTFAELVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0318492_1065527713300031748SoilDQVEPGSDGLVPIRARILAAAGVPWPQAFALSRYWLGP
Ga0318509_1049548013300031768SoilALQSAADQVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318521_1052409913300031770SoilVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318546_1058275713300031771SoilADQVEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0318566_1032397323300031779SoilHAAADQVEPCTDGLIPIRARILARAGVPWPQAFAMSRYWLGPK
Ga0318566_1052126323300031779SoilRARLALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318552_1033720713300031782SoilVEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0318499_1036735513300031832SoilQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0318511_1051320323300031845SoilRLALQSAADQVEPCTDGPEGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0306923_1113150513300031910SoilIEPCVDGPDGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0310913_1109717023300031945SoilFGDFVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0310909_1036963613300031947SoilRDFGDFVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0310909_1047243323300031947SoilCDPFSFGDFVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0318530_1040315213300031959SoilVRLALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0306922_1019938833300032001SoilSFGDFVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0306922_1185262723300032001SoilVSPSNPPTFAELVRLALHSAADQVEPGSDGLVPIRARILAAAGVPWPQAFALSRYWLGP
Ga0318563_1064437423300032009SoilARLALHAAADQVEPCTDGLVPIRARILARAGVPWPQAFAISRYWLGPK
Ga0318570_1026865513300032054SoilALHAAADQVEPCTDGLVPIRARILARAGVPWPRAFAMSRYWLGPK
Ga0318513_1027860213300032065SoilVRLALHAAAEQVEPCVDGPEGLVPIRARILARAGVPWPQAFALSRYWLGPK
Ga0318514_1018894923300032066SoilAARGRDFGDFVRLALHAAADQVEPCVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGP
Ga0318524_1001801313300032067SoilMHSAADQVEPCADGLVSIRARILAGAGVPWPQALALSVYWLGPKRRREPGAGA
Ga0318540_1006061333300032094SoilADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0307470_1015648713300032174Hardwood Forest SoilQIEPCTDGLIPIRARILARAGVPWPQAFAISRYWLGPK
Ga0306920_10099077613300032261SoilVDGPEGLVPIRARILARSGVPWPQAFALSRYWLGPK
Ga0335082_1147318623300032782SoilGPEPVSPAAFAEFLRRALNAAADQVEPCTDGLAPIRARILARAGVPWPQALAVSRYWLGP
Ga0335080_1110345813300032828SoilRGRDFADFVRLALHAAADQIEPRADGPEGLVPIRARILARSGVPWPQAFAMSRYWLGPK
Ga0318519_1059868533300033290SoilDPFSFGDFVRLALHSAADQVEPCTDGLIPIRARILARAGVPWRQAFAMSRYWLGPK
Ga0310811_1059446813300033475SoilGRDFGEFVRLALNAAADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK
Ga0373958_0127454_498_6203300034819Rhizosphere SoilADQIEPCTDGLIPIRARILARAGVPWPQAFALSRYWLGPK


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