Basic Information | |
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Family ID | F088859 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 109 |
Average Sequence Length | 59 residues |
Representative Sequence | VETLTLRVAELVVERQELRIRGASTASLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Number of Associated Samples | 96 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 53.21 % |
% of genes near scaffold ends (potentially truncated) | 46.79 % |
% of genes from short scaffolds (< 2000 bps) | 87.16 % |
Associated GOLD sequencing projects | 95 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.74 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (82.569 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (24.771 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.523 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.872 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 51.14% β-sheet: 0.00% Coil/Unstructured: 48.86% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.74 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Groundwater Sediment Groundwater Sediment Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Grasslands Soil Surface Soil Soil Permafrost Soil Grasslands Soil Hardwood Forest Soil Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Arabidopsis Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
OU_01396780 | 2124908016 | AEELTTIIGQLVAQRQELRARGASEASLERNRMQIARAQWELAHALIDRYLPEPAAQSAA | |
KansclcFeb2_09040350 | 2124908045 | Soil | VEALTLRVAELVAERQQLRDRDASDTALERNRIQIARAQWELGQALIDRYLPAEQPVV |
JGI10214J12806_117143882 | 3300000891 | Soil | GAGASVEALTLRVAGLVAERQQLRERGASQTALERNRIQLARAQWELSHALIDRHLPAARPAA* |
JGI10216J12902_1161777062 | 3300000956 | Soil | MSVEALTVRIAVLVAERQELRVSGAAEAAIERNRLQIARAQWELAHALIERHLPAEQTAA |
Ga0062593_1002604212 | 3300004114 | Soil | VEALTLRVAGLVAERQQLRERGASQTALERNRIQLARAQWELSHALIDRHLPAARPAA* |
Ga0063455_1003641332 | 3300004153 | Soil | MRVAGLVAERQELRDRLASDAALERNRRQIARAQWELGHALIDRHLPQPAAQNVA* |
Ga0062595_1009678132 | 3300004479 | Soil | RGAASVEALTLRVAELVAERQQLRDRDASDTALERNRIQLARAQWELGQALIDRYLPAEQPVV* |
Ga0066678_109610801 | 3300005181 | Soil | VEVLTVRIAALVAERQELRVSGAATATIERNRLQIARAQWDLSHALIERHLPAAQTAA* |
Ga0066388_1011029192 | 3300005332 | Tropical Forest Soil | LLIAGLVVERQGLRGRGAGAAALERNRVRLARAQWELGHALIERHLPQPATRSAA* |
Ga0070691_101818902 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | VEHLTLQIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0070671_1014453341 | 3300005355 | Switchgrass Rhizosphere | VEALTLRISLLVEERQQLRESGASETSIERNRVQLARAQWELAHALIDRYLPEPVEQPAA |
Ga0068867_1020996211 | 3300005459 | Miscanthus Rhizosphere | VENLTLHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQ |
Ga0070707_1002167972 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | VENLTLHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPEPAEQLSA |
Ga0073909_101002911 | 3300005526 | Surface Soil | TLRVAELVSERQQLRDRGASETALERNRIQLVRAQWELGHALIDRHLPPVSQSVA* |
Ga0070697_1005394672 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | VEHLTLQIAGLVAERQELRVRGASIASLERNRLQIARAQWELGHALIDRHLPEPAEQLSA |
Ga0074056_108168212 | 3300006574 | Soil | VGADSSVEALTLRISALVAERQELRDRGASESSLEKNRLQLARAQWELGHALIDRHLPEPAEQLSA* |
Ga0075433_103711762 | 3300006852 | Populus Rhizosphere | VEQLTLLITGLVAERQGLRNRGAGAAALERNRLRLARAQWELGHALIDRYLPQDSEQTAA |
Ga0075425_1012912041 | 3300006854 | Populus Rhizosphere | LTLLISALVAERQQLRDRGASETMLERNRVQLARAQWELGHALIDRHLPDPAAQPAA* |
Ga0075435_1020312102 | 3300007076 | Populus Rhizosphere | TRADVEQLTLLITGLVAERQGLRNRGAGAAALERNRLRLARAQWELGHALIDRYLPQDSEQTAA* |
Ga0066709_1008342092 | 3300009137 | Grasslands Soil | VEVLTVRIAALVAERQELRVSGAATAAIERNRLQIARAQWELSHALIERHLPAAQTAA* |
Ga0126307_1000004279 | 3300009789 | Serpentine Soil | VEALTLRVAQLVVERQELRIRGASAASLERNRLQIARAQWELGHALIERYLPRPAARRAA |
Ga0126313_106288021 | 3300009840 | Serpentine Soil | VEALTLRVAGLVAQRQELRVRGASAASLERNRLQIARAQWELGHALIDRYLPQPAARSAA |
Ga0126309_100701562 | 3300010039 | Serpentine Soil | VEVLTLRVAQLVVERQELRIQGASAVSLERNRLQIARAQWELGHALIDRYLQDPAAQSAA |
Ga0126309_103693082 | 3300010039 | Serpentine Soil | MRVAGLVAERQELRDRQASDAALERNRRQIARAQWELGHALIDRHLPQPAAQNVA* |
Ga0126308_1000069811 | 3300010040 | Serpentine Soil | VEALTLRVAQLVVERQELRIRGASTVSLERNRLQIAHAQWELGHALIDRHLPEPAAQSAA |
Ga0126314_101507383 | 3300010042 | Serpentine Soil | AARIAILVAERQRLRARGAGEASLERNRLQLARAQWELGHALIDRHLPGEQAVA* |
Ga0134088_104673811 | 3300010304 | Grasslands Soil | VEVLTVRIAALVAERQELRVSGAATAPIERNRPQIARAQWDLSHALIERHLPAERTAA* |
Ga0134062_105303432 | 3300010337 | Grasslands Soil | VEVLTVRIAALVAERQELRVSGAATAAIERNRLQIARAQWDLSHALIERHLPAAQTAA* |
Ga0134066_103262912 | 3300010364 | Grasslands Soil | SRTSVEALTLRVGVLVAERQELRDRGASATALERNRLQLARAQWELSHALIERYLPASEAA* |
Ga0134125_114283701 | 3300010371 | Terrestrial Soil | SGASVEALTLRLGLLVAERQQLRESGASAKALERNRLQLARAQWELSHALIDRHLPAAQPAA* |
Ga0134128_106604332 | 3300010373 | Terrestrial Soil | VEHPTLQIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0134126_125139302 | 3300010396 | Terrestrial Soil | VEHLTLQIAGLVAERQELRVRGASIASLERNRLQIARAQWELGHALIDR |
Ga0138505_1000316382 | 3300010999 | Soil | VENLTLQIAGLVAERQALRARAASIPSLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0138513_1000591041 | 3300011000 | Soil | VENLTLQIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0138514_1000300762 | 3300011003 | Soil | VILVAELVAERQELRTTGAGATAIERNRLHLARAQWELGLALIERHLPETPAETAA* |
Ga0120157_10509992 | 3300011994 | Permafrost | VETLTLRVAELVVERQELRIRGASTASLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0120156_10396152 | 3300011996 | Permafrost | VETLTLRVAELVVERQELRIRGASTASLERNRLQIARAQWELGLALIDRHLPEPAAQSAA |
Ga0120139_10644422 | 3300012019 | Permafrost | VETLTLRVAELVVERQELRIRGTSTASLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0137365_109022651 | 3300012201 | Vadose Zone Soil | SRGRASVEALTVRIAVLVAERQELRVSGAAEAAIERNRLQIARAQWELAHALIEQHLTAAQTAA* |
Ga0137374_100028588 | 3300012204 | Vadose Zone Soil | VEALTLRIAELVAERQELRDRGAGDSGDSSLERNRLQIARAQWELGHALIDRHLPQPAARSAA* |
Ga0137374_100529702 | 3300012204 | Vadose Zone Soil | VEALTLRIAALVVERQQLRGANVGVADLERNRLEIARAQWELAHALIERHLPGRATQTAA |
Ga0137374_110318152 | 3300012204 | Vadose Zone Soil | VVERQQLRGANAGMAELERNRLQIARAQRELAQALIQRHLPGRAAQTAA* |
Ga0137380_108933412 | 3300012206 | Vadose Zone Soil | VRIATLVAERQELRGGGAATAAIERNRLQIARAQWELAHALIEQYLPAAQTAA* |
Ga0137377_104216302 | 3300012211 | Vadose Zone Soil | VETLTLRVAELVVERQELRIRGASSVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0137366_103949122 | 3300012354 | Vadose Zone Soil | VEALTLRIAALVVERQQLRGANAGMAELERNRLQIARAQWELAHALIEQHLTAAQTAA* |
Ga0162651_1000395802 | 3300012938 | Soil | LTLQIAGLVAERQELRAHGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA* |
Ga0164298_115040922 | 3300012955 | Soil | RADSSVEALTLRISALVAERQQLRDRGASETLLERNRLQLARAPWELGHALIDRHLPEPAEQLSA* |
Ga0164305_117621182 | 3300012989 | Soil | ASVEALTLRVAELVSERQQLRERGASETALEKNRIQLVRAQWELGHALIDRHLPPVSQSVA* |
Ga0157380_121522142 | 3300014326 | Switchgrass Rhizosphere | VENLTLHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIERYLPQPATRSAA |
Ga0157377_107085831 | 3300014745 | Miscanthus Rhizosphere | VEHLTLQIAGLVAERQELRVRGASIASLERNRLQIARAQWELGHALIDRHLPEDAAQSAA |
Ga0120104_10337941 | 3300014829 | Permafrost | VEALTLRVAELVVERQELRMRCASNIALERNRLQIARAQWELGHALIDRYLPEPAAAQSAA* |
Ga0134085_105873172 | 3300015359 | Grasslands Soil | VLTIQIASLVAERQDLRVSGAAEAAIERNRRQIARAQWELSHALIERHLPAAQTAA* |
Ga0132258_122663582 | 3300015371 | Arabidopsis Rhizosphere | ADVEELTLLIAGLVAERQGLRSRGAGTGALERNRLRLARAQWELGHALIARHLPQPATRSAA* |
Ga0132257_1030821601 | 3300015373 | Arabidopsis Rhizosphere | LVAERQQLRDQGASEAMLERNRVQLARAQWELGHALIDRHLPDPAAQPAA* |
Ga0132255_1060185622 | 3300015374 | Arabidopsis Rhizosphere | IAGLVAERQGLRSRGAGTAALERNRLRLARAQWELGHALIERHLPRPATRSAA* |
Ga0184605_100070882 | 3300018027 | Groundwater Sediment | VRTTAEELTTRIGQLVAERQELRARGASEKSLERNRLQIARAQWELAHALIDRYLPEPAAQTAA |
Ga0184605_101259982 | 3300018027 | Groundwater Sediment | VETLTLRIGELVVERQELRIRGASTVSLERNRLLIARAQWELGHALIDRHLPEPAAQSAA |
Ga0184605_101313171 | 3300018027 | Groundwater Sediment | RSRSTVEALTLRVAQLVVERQELRIRGASTVSLERNRLQIARAQWELGHALIDRHLPEPAAQSTA |
Ga0184620_100128152 | 3300018051 | Groundwater Sediment | VEALTLRVAQLVVERQELRIRGASAVSLERNRLQIARAQWELGHALIDRHLPEPATQSAA |
Ga0184620_100263752 | 3300018051 | Groundwater Sediment | MRIAELVGERQELRDRGARHGALERNRVQLARAQWELGHALIDRHLPEPVEQPA |
Ga0184621_101057862 | 3300018054 | Groundwater Sediment | VEALTLRVAQLVVERQELRIRGASAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0184621_101471102 | 3300018054 | Groundwater Sediment | MRIAELVGERQELRDRGARHGALERNRVQLARAQWELGHALIERHLPERTQTAA |
Ga0184619_100237332 | 3300018061 | Groundwater Sediment | VEALTLRVAQLVVERQELRIRGANAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0184619_100458842 | 3300018061 | Groundwater Sediment | MLTSRIAELVAERQELRDRGVGPAALERNRRQIARAHWELAHALIDRYRPESAARTAA |
Ga0184618_100093302 | 3300018071 | Groundwater Sediment | VRTTAEELTTRIGRLVAERQELRARGASEKALERNRLQIARAQWELAHALIDRYLPEPAAQTAA |
Ga0184618_101319912 | 3300018071 | Groundwater Sediment | VEALTLRVAQLVVERQELRIRGASTVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0184624_100552162 | 3300018073 | Groundwater Sediment | VENLTLHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0184640_104242921 | 3300018074 | Groundwater Sediment | LHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0193729_11483412 | 3300019887 | Soil | VETLTLRVAELVVDRQELRIRGASTASLERNRLQIARAQWELGLALIDRHLPEPAAQSAA |
Ga0193697_10107471 | 3300020005 | Soil | LRGAELVAERQQLRERGANDTALERNRIQIARAQWELGHALIDRHLQPASQSAA |
Ga0193745_10175983 | 3300020059 | Soil | VEALTLRVAELVVERQELRIRGAGTVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0210382_100329232 | 3300021080 | Groundwater Sediment | VEVLTLRIGELVVERQELRIRGASTVSLERNRLLIARAQWELGHALIDRHLPEPAAQSAA |
Ga0193750_10039692 | 3300021413 | Soil | VEALTLRVAELVVERQELRIRGGSMVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0224452_11574542 | 3300022534 | Groundwater Sediment | VENLTLHIAGLVAERQELRARGASNAPLERNRLQIARAQWELGHALIERYLPQPAARSAA |
Ga0222622_100587452 | 3300022756 | Groundwater Sediment | VEALTLRVAQLVVERQELRIRGATAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0207642_105185452 | 3300025899 | Miscanthus Rhizosphere | VENLTLHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAA |
Ga0207645_101726731 | 3300025907 | Miscanthus Rhizosphere | VEHLTLQIAGLVAERQELRVRGASIASLERNRLQIARAQWELGHALIDRHLPEAAAQSAA |
Ga0207693_114607672 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | RISTLVAERQQLRDRGASESSLERNRLQLARAQWELGHALIDRHLPQAAAQSAA |
Ga0207694_115171342 | 3300025924 | Corn Rhizosphere | LTLRISLLVEERQQLRERCASETSIERNRVQLARAQWELAHALIDRHLPDSAEQPAA |
Ga0207706_100101842 | 3300025933 | Corn Rhizosphere | VENLTLHIAGLVAERQELRVRGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0207668_101647651 | 3300025972 | Switchgrass Rhizosphere | VEHLTLQIAGLVAERQELRVRGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSA |
Ga0207668_101958571 | 3300025972 | Switchgrass Rhizosphere | LRPARFRRSRTRADVEHLTLQIAGLVAERQELRVRGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0307279_101105491 | 3300028709 | Soil | VERQELRIRGASAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0307293_101464642 | 3300028711 | Soil | VRTTAEELTTRIGRLVAERQELRARGASEKSLERNRLQIARAQCELAHALIDRYLPEPAAQTAA |
Ga0307285_102198871 | 3300028712 | Soil | AVASVELLTLRVAELVAERQQLRERGANDTALERNRIQIARAQWELGHALIDRHLQPASQSAA |
Ga0307317_101129762 | 3300028720 | Soil | VEHLTLQIAGLVAERQELRAHGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0307315_100571622 | 3300028721 | Soil | HLRPARFRRSRTRADVENLTLHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0307319_101324801 | 3300028722 | Soil | RVAQLVVERQELRIRGASAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0307297_100215764 | 3300028754 | Soil | ASVEALTLRVAELVSERQQLRERGASETALEKNRIQLARAQWELGHALIDRHLQPASQSA |
Ga0307282_102528341 | 3300028784 | Soil | VLRIAELVVERQELRTTGAGAMAIERNRLQLARAQWELGHALIDRHLPEPAQTAA |
Ga0307290_103252961 | 3300028791 | Soil | VRTTAEELTTRIGQLVAERQELRARGAGVKALERNRLQIARAQWELAHALIDRYLPEPAA |
Ga0307299_102978682 | 3300028793 | Soil | VETLTLRVAELVVERQELRLRGASNTSLERNRLQIARAQWELGHALIDRYLPEPASA |
Ga0307305_100091941 | 3300028807 | Soil | VRTTAEELTTRIGQLVAERQELRARGASEKALERNRLQIARAQWELAHALIDRYLPEPAAQTAA |
Ga0307305_100564261 | 3300028807 | Soil | LTLRVAQLVVERQELRIRGASAVSLERNRLQIARAQWELGHALIDRHLPEPATQSAA |
Ga0307310_100520811 | 3300028824 | Soil | LVVERQELRIRGASAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0307314_102806212 | 3300028872 | Soil | VVERQELRVRGANAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0307278_101057692 | 3300028878 | Soil | LTLQIAGLVAERQELRAHGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0307300_100009992 | 3300028880 | Soil | MRIAELVGERQELRDRCARHGALERNRVQLARAQWELGHALIERHLPERTQTAA |
Ga0307300_100805952 | 3300028880 | Soil | PSRFRRGRGRTTAEELTARIGQLVAERQELRARGASEASLERNRMQIARAQWELAHALIDRYLPEPAAQTAA |
Ga0307304_103982411 | 3300028885 | Soil | RIAELVGERQELRDRGARHGALERNRVQLARAQWELGHALIERHLPERTQTAA |
Ga0247827_106488532 | 3300028889 | Soil | LVAERQELRVRGASIASLERNRLQIARAQWELGHALIDRHLPEAAAQSAA |
Ga0247827_108309282 | 3300028889 | Soil | VEALTLRVAQLVVERQELRMRGAGAVSLERNRLQIARAQWELGHALIDRHLPEPAAQSAA |
Ga0307497_104979241 | 3300031226 | Soil | LRVAELVSERQRLRERGASETALEKNRIQLVRAQWELGHALIDRHLPAAQPAA |
Ga0307408_1017088432 | 3300031548 | Rhizosphere | VETLTLRISALVAERQTLRAKGGSLAALERNRVQIARAQWELGHALIDRYLPPAPAKTAA |
Ga0310813_110382732 | 3300031716 | Soil | RRADSSVEALTLLISALVAERQQLRDRGASETMLERNRVQLARAQWELGHALIERHLPDPAAQPAA |
Ga0308175_1000100714 | 3300031938 | Soil | VDNLTLQIAGLVVERQELRARGASIASLERNRLQIARAQWELGHALIERYLLRPATRSAA |
Ga0307472_1003898991 | 3300032205 | Hardwood Forest Soil | RSRTRADVENLTLHIAGLVAERQELRARGASIASLERNRLQIARAQWELGHALIDRHLPQAAAQSAA |
Ga0335080_123890102 | 3300032828 | Soil | TVEELAVRLEALVAERQKLRGRAASARALERNRLQIARAQWELSHLLIDRYLPAA |
Ga0310810_104266961 | 3300033412 | Soil | RRRADSSVEALTLLISALVAERQQLRDRGASETMLERNRVQLARAQWELGHALIDRHLPDPAAQPAA |
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