Metagenome / Metatranscriptome Family F088840

Basic Information
Family ID	F088840
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	MAEILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRRLCDRAGPFG
Number of Associated Samples	106
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.41 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	88.07 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Bacteria (93.578 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.183 % of family members)
Environment Ontology (ENVO)	Unclassified (16.514 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.55% β-sheet: 8.22% Coil/Unstructured: 71.23%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00293	NUDIX	47.71
PF07729	FCD	5.50
PF05199	GMC_oxred_C	1.83
PF00106	adh_short	0.92
PF01068	DNA_ligase_A_M	0.92
PF13280	WYL	0.92
PF00732	GMC_oxred_N	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	5.50
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	5.50
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	2.75
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.92
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.58 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	90.83 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	90.83 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	76.15 %
Unclassified	root	N/A	6.42 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	66.06 %
Unclassified	root	N/A	6.42 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.92 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.92 %

Name	Rank	Taxonomy	Distribution
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	66.06 %
Unclassified	root	N/A	6.42 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.92 %

Name	Rank	Taxonomy	Distribution
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	66.06 %
Unclassified	root	N/A	6.42 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.92 %

Name	Rank	Taxonomy	Distribution
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	66.06 %
Unclassified	root	N/A	6.42 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10063273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1430	Open in IMG/M
3300004092\|Ga0062389_103529548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300004635\|Ga0062388_102784526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	515	Open in IMG/M
3300005435\|Ga0070714_101590279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300005541\|Ga0070733_10141336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1558	Open in IMG/M
3300005834\|Ga0068851_10019483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3278	Open in IMG/M
3300006032\|Ga0066696_10841599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	585	Open in IMG/M
3300006046\|Ga0066652_100928953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	829	Open in IMG/M
3300006604\|Ga0074060_10018978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	726	Open in IMG/M
3300006796\|Ga0066665_10204604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1534	Open in IMG/M
3300006804\|Ga0079221_10829508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	667	Open in IMG/M
3300006954\|Ga0079219_12415158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	510	Open in IMG/M
3300009090\|Ga0099827_10130752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2033	Open in IMG/M
3300010154\|Ga0127503_10579490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	892	Open in IMG/M
3300010323\|Ga0134086_10378341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	565	Open in IMG/M
3300010341\|Ga0074045_10106645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1933	Open in IMG/M
3300010359\|Ga0126376_10347058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1314	Open in IMG/M
3300010360\|Ga0126372_10563294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1085	Open in IMG/M
3300010366\|Ga0126379_11707107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	734	Open in IMG/M
3300010401\|Ga0134121_10098080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2455	Open in IMG/M
3300012210\|Ga0137378_10852986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	824	Open in IMG/M
3300012353\|Ga0137367_10040501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3550	Open in IMG/M
3300012483\|Ga0157337_1026101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	571	Open in IMG/M
3300012499\|Ga0157350_1008981	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	809	Open in IMG/M
3300014150\|Ga0134081_10296777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	579	Open in IMG/M
3300014489\|Ga0182018_10746379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	509	Open in IMG/M
3300014654\|Ga0181525_10613310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	607	Open in IMG/M
3300015372\|Ga0132256_102884159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	578	Open in IMG/M
3300017932\|Ga0187814_10363412	Not Available	560	Open in IMG/M
3300017974\|Ga0187777_10270221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1157	Open in IMG/M
3300018034\|Ga0187863_10495215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	684	Open in IMG/M
3300018038\|Ga0187855_10726537	Not Available	579	Open in IMG/M
3300018047\|Ga0187859_10148045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1244	Open in IMG/M
3300018085\|Ga0187772_10941897	Not Available	629	Open in IMG/M
3300019361\|Ga0173482_10258711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	745	Open in IMG/M
3300020150\|Ga0187768_1110772	Not Available	628	Open in IMG/M
3300020581\|Ga0210399_11317249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	568	Open in IMG/M
3300021401\|Ga0210393_10096624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2350	Open in IMG/M
3300021401\|Ga0210393_10610754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	890	Open in IMG/M
3300021403\|Ga0210397_11506854	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	522	Open in IMG/M
3300021405\|Ga0210387_11192038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	661	Open in IMG/M
3300021477\|Ga0210398_10086392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2548	Open in IMG/M
3300021560\|Ga0126371_11284905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	866	Open in IMG/M
3300022521\|Ga0224541_1008710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1091	Open in IMG/M
3300024249\|Ga0247676_1008524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1555	Open in IMG/M
3300025898\|Ga0207692_10498645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	772	Open in IMG/M
3300025906\|Ga0207699_10348935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1044	Open in IMG/M
3300025911\|Ga0207654_10082794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1936	Open in IMG/M
3300025928\|Ga0207700_11194916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	679	Open in IMG/M
3300025940\|Ga0207691_10189068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1797	Open in IMG/M
3300026089\|Ga0207648_10192958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1806	Open in IMG/M
3300026142\|Ga0207698_11641666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	658	Open in IMG/M
3300026550\|Ga0209474_10481377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	629	Open in IMG/M
3300027031\|Ga0208986_1024345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	637	Open in IMG/M
3300027058\|Ga0209111_1013617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	918	Open in IMG/M
3300027073\|Ga0208366_1031988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	588	Open in IMG/M
3300027504\|Ga0209114_1019394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1098	Open in IMG/M
3300027609\|Ga0209221_1006490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2981	Open in IMG/M
3300027692\|Ga0209530_1099016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	830	Open in IMG/M
3300027795\|Ga0209139_10224182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	665	Open in IMG/M
3300027821\|Ga0209811_10434775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	509	Open in IMG/M
3300027879\|Ga0209169_10367577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	757	Open in IMG/M
3300027889\|Ga0209380_10351381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	865	Open in IMG/M
3300027905\|Ga0209415_11013067	Not Available	551	Open in IMG/M
3300028742\|Ga0302220_10177149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	803	Open in IMG/M
3300028742\|Ga0302220_10353432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	530	Open in IMG/M
3300028747\|Ga0302219_10245681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	694	Open in IMG/M
3300028808\|Ga0302228_10086173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1479	Open in IMG/M
3300029943\|Ga0311340_10193091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2062	Open in IMG/M
3300029944\|Ga0311352_10608002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	872	Open in IMG/M
3300030007\|Ga0311338_10913504	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300030007\|Ga0311338_11786069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	554	Open in IMG/M
3300030013\|Ga0302178_10072068	All Organisms → cellular organisms → Bacteria	1835	Open in IMG/M
3300030056\|Ga0302181_10012672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5052	Open in IMG/M
3300030058\|Ga0302179_10542214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	510	Open in IMG/M
3300030399\|Ga0311353_10027516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6101	Open in IMG/M
3300030509\|Ga0302183_10418569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	512	Open in IMG/M
3300030520\|Ga0311372_11587499	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300030580\|Ga0311355_10013447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10453	Open in IMG/M
3300030617\|Ga0311356_11049727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	758	Open in IMG/M
3300030618\|Ga0311354_11013824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	764	Open in IMG/M
3300030862\|Ga0265753_1049243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	743	Open in IMG/M
3300031199\|Ga0307495_10066138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	782	Open in IMG/M
3300031231\|Ga0170824_101845001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	706	Open in IMG/M
3300031233\|Ga0302307_10370420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	729	Open in IMG/M
3300031236\|Ga0302324_100019637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13260	Open in IMG/M
3300031561\|Ga0318528_10526352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	635	Open in IMG/M
3300031679\|Ga0318561_10459072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	701	Open in IMG/M
3300031764\|Ga0318535_10513515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	532	Open in IMG/M
3300031770\|Ga0318521_10141036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1362	Open in IMG/M
3300031798\|Ga0318523_10576227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	555	Open in IMG/M
3300031846\|Ga0318512_10318712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	774	Open in IMG/M
3300031879\|Ga0306919_11035452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	627	Open in IMG/M
3300031890\|Ga0306925_11148609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	782	Open in IMG/M
3300031941\|Ga0310912_10520779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	927	Open in IMG/M
3300031959\|Ga0318530_10425370	Not Available	551	Open in IMG/M
3300032043\|Ga0318556_10753995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	506	Open in IMG/M
3300032044\|Ga0318558_10518635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	595	Open in IMG/M
3300032055\|Ga0318575_10597882	Not Available	559	Open in IMG/M
3300032066\|Ga0318514_10069643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1738	Open in IMG/M
3300032090\|Ga0318518_10418125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	687	Open in IMG/M
3300032091\|Ga0318577_10434625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	627	Open in IMG/M
3300032261\|Ga0306920_102748246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	671	Open in IMG/M
3300032770\|Ga0335085_11736814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	641	Open in IMG/M
3300032805\|Ga0335078_11090860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	935	Open in IMG/M
3300032954\|Ga0335083_10447114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1093	Open in IMG/M
3300032955\|Ga0335076_10946419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	743	Open in IMG/M
3300033158\|Ga0335077_10176739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2422	Open in IMG/M
3300033290\|Ga0318519_10237935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1050	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.58%
Host-Associated	Host-Associated	6.42%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.32%
Aquatic	Environmental → Aquatic	8.26%
Plants	Host-Associated → Plants	6.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.97%
Peat	Environmental → Terrestrial → Peat	18.35%
Freshwater	Environmental → Aquatic → Freshwater	8.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.87%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	18.35%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	18.35%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.51%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.18%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	17.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.92%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012483	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.yng.040610	Host-Associated	Open in IMG/M
3300012499	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.yng.030610	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300024249	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027058	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027504	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088840

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_100632732	3300003505	Forest Soil	MAEILNAHGSLNDIFVTALTPGDFASDADLRAFVRNLCDRHGPFGG
Ga0062389_1035295482	3300004092	Bog Forest Soil	MAEILNAHGSKNDIFVAAMTPCDFASQADLRAFVTHLCDRSGP
Ga0062388_1027845261	3300004635	Bog Forest Soil	MAEILNAHGSKNDIFVAAMTPCDFASQADLRAFVTHLCDR
Ga0070714_1015902791	3300005435	Agricultural Soil	MAEILNAHGSRNDIFVVPMTPRDFASDGELRAFVKRLCDRAGPFGGD
Ga0070733_101413361	3300005541	Surface Soil	MAEILNAHGSLNDIFVAELTPGDFASETDLRAFVRNLCDRGGPF
Ga0068851_100194835	3300005834	Corn Rhizosphere	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFARRLCDRAGPFGGDGIYLYDAAPPIP
Ga0066696_108415991	3300006032	Soil	VVGILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRRLCDRA
Ga0066652_1009289531	3300006046	Soil	VAEILNAHGSKNDIFVAEMTPGDFASDEDLRAFVRRLCDRA
Ga0074060_100189781	3300006604	Soil	VAEILNAHGSKNDIFVAAMTPRDFASDEDLRAFVRRLCDR
Ga0066665_102046041	3300006796	Soil	VAEILNAHGSKNDIFVVPMRPRDFASDDDLRAFVRRL
Ga0079221_108295082	3300006804	Agricultural Soil	VAEILNAHGSRNDIFVAAMTPRDFASDEDLRAFVRRLCDRAGPFGGD
Ga0079219_124151581	3300006954	Agricultural Soil	VAEILNAYGSKNDIFVAAMTPRDFATDEDLRAFVRRLCDRAGPFGG
Ga0099827_101307521	3300009090	Vadose Zone Soil	MAGILNAHGSKNDIFVVAMTPRDFASDDELRAFVRRLCDRNGPFGGDGV
Ga0127503_105794901	3300010154	Soil	VAEILNAHGSKNDIFVTAMTPRDFASDAGLRAFVRRL
Ga0134086_103783412	3300010323	Grasslands Soil	VAEILNAHGSKNDIFVAAMTPRDFASDAGLRAFVRRLCD
Ga0074045_101066451	3300010341	Bog Forest Soil	MAEILNAHGSKNDIFVVAMTPRDFASGADLRAFVRR
Ga0126376_103470583	3300010359	Tropical Forest Soil	VAEILNAHGSKNDIFVAAMTPRDFASADDLRSFVRRLCDRAGPFGGDGIYFYD
Ga0126372_105632941	3300010360	Tropical Forest Soil	VVEILNAHGSKNDIFVAAMTPRDFASDEDLRAFVRRVCDRAGPFGGDGI
Ga0126379_117071072	3300010366	Tropical Forest Soil	MAEILNAHGSKNDIFVAAMTPRDFASADDLRGFVRRLCDRAGPFGGDGIYFY
Ga0134121_100980804	3300010401	Terrestrial Soil	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFVRRLCDRAGPFGGDGIY
Ga0137378_108529861	3300012210	Vadose Zone Soil	VVGILNAHGSKNDIFVAAMTPRDFASDEDLRAFVRR
Ga0137367_100405011	3300012353	Vadose Zone Soil	VAEILNAHGSKNDIFVAAMTPRDFASDEDLRAFVR
Ga0157337_10261012	3300012483	Arabidopsis Rhizosphere	VAEILNAHGSKNDIFVAAMTPRDFATDEDLRAFVRRLCDRAGPFGGDGIY
Ga0157350_10089811	3300012499	Unplanted Soil	VAEILNAHGSKNDIFVAAMTPRDFASDEALRAFVRRL
Ga0134081_102967772	3300014150	Grasslands Soil	VVGILNAHGSKNDIFVAAMTPRDFASDEDLRAFVRRLCDRAGPFGGDGIY
Ga0182018_107463792	3300014489	Palsa	MAEILSAHGSRNDIFVAAMTPRDFASEAGLRAFVRNLGDRDGPFGGDGIYFYDA
Ga0181525_106133101	3300014654	Bog	VAEILNAHGSKNDIFVAAMTPRDFASEAELAAFVRHLCDRGGPFGGD
Ga0132256_1028841592	3300015372	Arabidopsis Rhizosphere	MAEILNAHGSKNDIFVAAMRPRDFASSDDLRSFVRRLCDRAGPFGGDGIYFYDA
Ga0187814_103634121	3300017932	Freshwater Sediment	MAEILNAHGSMNDIFLMARTPYDFASDADVHAFVRHLCDRAGPFGGD
Ga0187777_102702211	3300017974	Tropical Peatland	VAEILNAHGSKNDIFVAAMTPRDFASGDDLRDFVRRLCDRAGPFGGDGIYFYDAGPRVPE
Ga0187863_104952151	3300018034	Peatland	MTEILNAHGSKNDIFVAAMPPRDFTSEADLQAFVRRL
Ga0187855_107265371	3300018038	Peatland	MAEILNAHGSLNDIFVAEITPGDFASETDLRTFVRHLCDRGGTFG
Ga0187859_101480453	3300018047	Peatland	MAEILNAHGSRNDIFVVPMRPRDFAQPDLHAFVRHLCDRNGPLG
Ga0187772_109418971	3300018085	Tropical Peatland	MAEILNVHGSRNDIFVTALTPGDFAGAWDLGAFVRNLCDRGGPFGGDGVYFYDAGRPVPE
Ga0173482_102587111	3300019361	Soil	VAEVLNAHGSKNDIFVASMTPRDFASDAGLRTFVRRLCDRAGPFGGDGIYFYDAAPPVPEAW
Ga0187768_11107721	3300020150	Tropical Peatland	MAEILNAHGSKNDIFVTPLTPADFAAEADLRAFVRNL
Ga0210399_113172492	3300020581	Soil	VAEILNAHGSKNDIFVVPMTPRDFASDEDLRGFVRRL
Ga0210393_100966241	3300021401	Soil	MAEILSAHGSRNDIFVTALTPADFASDADLRAFVRNVCDRG
Ga0210393_106107541	3300021401	Soil	MAEILNAHGSLNDIFVVELTPGDFASETDLRAFVRSLCDR
Ga0210397_115068542	3300021403	Soil	MAEILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRRLCDRAGPFG
Ga0210387_111920381	3300021405	Soil	MAEILNAHGSLNDIFVAELTPGDFASDTDLRAFVRNLCDR
Ga0210398_100863924	3300021477	Soil	MAEILNAHGSKNDIFVAAMTPRDFASGDDLRAFVRRLCDWGGPFGGDGVY
Ga0126371_112849051	3300021560	Tropical Forest Soil	VVEILNAHGSKNDIFVAAMTPRDFASADDLRAFVR
Ga0224541_10087102	3300022521	Soil	MAEILNAHGSLNDIFVAELTPGDFASETDLGTFVRHL
Ga0247676_10085243	3300024249	Soil	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFVRR
Ga0207692_104986451	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFVRRLCDRAGPFG
Ga0207699_103489352	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAEILNAHGSRNDIFVVPMTPRDFASDGELRAFVQRLCDR
Ga0207654_100827941	3300025911	Corn Rhizosphere	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFVR
Ga0207700_111949162	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VAEILNAHGSKNDIFVAAMTPRDFASDEDLRAFVRRLCDRAGPFGGD
Ga0207691_101890681	3300025940	Miscanthus Rhizosphere	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFVRRLCDRAGSFGGDGIY
Ga0207648_101929581	3300026089	Miscanthus Rhizosphere	VAEILNAHGSKNDIFVAAMTPRDFASAEDLRAFVRRLCD
Ga0207698_116416662	3300026142	Corn Rhizosphere	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFVRRLCDRA
Ga0209474_104813772	3300026550	Soil	VVGILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRR
Ga0208986_10243451	3300027031	Forest Soil	VAEILNAHGSKNDIFVAAMTPRDFASDAGLRAFVRRLCDRAGPFGGD
Ga0209111_10136171	3300027058	Forest Soil	VAEILNAHGSKNDIFIAAMTPRDFASDAGLRAFVRRLCDRAGPFGGDGI
Ga0208366_10319881	3300027073	Forest Soil	VAEILNAHGSKNDIFVVAMTPRDFAAEDDLRAFVRRL
Ga0209114_10193942	3300027504	Forest Soil	VAEILNAHGSKNDIFVAAMTPRDFASGAELEAFVRHLCDRAG
Ga0209221_10064905	3300027609	Forest Soil	MTEILNAHGSLNDIFVAELTPGDFASETDLRTFVRHLCDRGG
Ga0209530_10990162	3300027692	Forest Soil	MAEILNAHGSRNDIFVAAMTPRDFASETGLRAFVR
Ga0209139_102241821	3300027795	Bog Forest Soil	MAGILNAHGSKNDIFVAAMTPRDFASDDDLRGFVRRLC
Ga0209811_104347751	3300027821	Surface Soil	VAEILNAHGSKNDIFVAAMTPRDFASDAGLRAFVRRLCDRAGPFGGDGIY
Ga0209169_103675771	3300027879	Soil	MAEILKAHGSRNDIFIVPLTPADFQTDADLRVFVRAVCDRS
Ga0209380_103513812	3300027889	Soil	MTEILNAHGSRNDIFVAAMPPRDFASEADLQAFVRRLCDRNGPFGG
Ga0209415_110130671	3300027905	Peatlands Soil	MAEILNAHGSLNDIFVAEFTPGDFASEADLRAFVRS
Ga0302220_101771492	3300028742	Palsa	MTEILNAHGSKNDIFVAAMAPRDFASEADLQAFVRRL
Ga0302220_103534321	3300028742	Palsa	MAEILNAHGSKNDIFVAAMTPRDFASEAELAAFVRH
Ga0302219_102456812	3300028747	Palsa	MTEILNAHGSKNDIFVAAMPPRDFTSEADLQAFVRRLCDRNGPFGGDGIYFYDAGP
Ga0302228_100861731	3300028808	Palsa	MTEILNAHGSRNDIFVAAMPPRDFASEADLQAFVRRLCDR
Ga0311340_101930911	3300029943	Palsa	MTEILNAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDRNGPFGGDGIYFYDA
Ga0311352_106080022	3300029944	Palsa	MTEILNAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDRNGPFGGDGIYFYDAGPRVPE
Ga0311338_109135042	3300030007	Palsa	MTEILSAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDRNGPFGGDGIYFYDAGPRVPEAW
Ga0311338_117860691	3300030007	Palsa	MTEILNAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDRNGPFGGDGER
Ga0302178_100720681	3300030013	Palsa	MTEILNAHGSKNDTFVAAMAPRDFASEADVQAFVR
Ga0302181_100126726	3300030056	Palsa	MTEILSAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDRNGPFGGDGIYFY
Ga0302179_105422141	3300030058	Palsa	MAEILNAHGSKNDIFVAAMTPRGFASEAELAAFVRHLCDRSGPF
Ga0311353_100275161	3300030399	Palsa	MTEILNAHGSKNDIFVAAMPPRDFTSEADLQAFVRRLCDRNGPFGGDGIYFYDAG
Ga0302183_104185691	3300030509	Palsa	MTEILNAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDR
Ga0311372_115874991	3300030520	Palsa	MTEILSAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDRNGPFGGDGIYFYDAGPRVP
Ga0311355_100134471	3300030580	Palsa	MAEILNAHGSLNDIFVAELTPGDFASDTDLRAFVRHLCDRG
Ga0311356_110497272	3300030617	Palsa	MAEILNAHGSKNDIFVAAMTPRGFASEAELAAFVRHLGDRSGPFGGDGVYFYD
Ga0311354_110138241	3300030618	Palsa	MTEILNAHGSKNDIFVAAMPPRDFASEADLQAFVRRLCDRNG
Ga0265753_10492431	3300030862	Soil	MAEILNAHGSKNDIFVAAMTPRDFASDDDLCAFVRRLCDR
Ga0307495_100661382	3300031199	Soil	VADILNAHGSKNDIFVAAMTPRDFASDEDLRDFVRRLCDRAGPFGGDGIYLYDAT
Ga0170824_1018450011	3300031231	Forest Soil	VAEILNAHGSKNDIFVAAMTPRDFASDEDLRVFVRRLCDRAGPFGGDGIYFY
Ga0302307_103704201	3300031233	Palsa	MTEILNAHGSKNDIFVAAMPPRDFASEADLQAFVRR
Ga0302324_1000196371	3300031236	Palsa	MTEILNAHGSKNDIFVAAMPPRDFTSEADLQAFVRRLCDRNGPFGGDGIYFYDAGPRVPE
Ga0318528_105263521	3300031561	Soil	MAEILNAHGSQNDIFVTALTPADFAGASDLRAFVRNVC
Ga0318561_104590721	3300031679	Soil	MAEILNAHGSLNDIFVTELTPGDFASETDLRAFVRRLCDRR
Ga0318535_105135151	3300031764	Soil	VAEILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRRLCD
Ga0318521_101410361	3300031770	Soil	MAEILNAHGSLNDIFVTELAPGDFASDTDLRAFVRRLCDRRGPFGGD
Ga0318523_105762272	3300031798	Soil	VAEILNAHGSKNDIFVAAMTPRDFASDDDLRAFVR
Ga0318512_103187121	3300031846	Soil	VAEILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRR
Ga0306919_110354522	3300031879	Soil	MAEILNAHGSLNDIFVTEFTPSDFASETDLRAFVRTLCDRRGPFG
Ga0306925_111486092	3300031890	Soil	MAEILNAHGSLNDIFVTELTPGDFASETDLCAFVR
Ga0310912_105207791	3300031941	Soil	VAEILNAHGSKNDIFVAAMTPRDFASADDLRAFVRWLCD
Ga0318530_104253701	3300031959	Soil	MAEILNAHGSLNDIFVTELAPGDFASDTDLRAFVRRLCDRRG
Ga0318556_107539952	3300032043	Soil	VAEILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRRLCDRA
Ga0318558_105186352	3300032044	Soil	VTEILNAHGSKNDIFVAAMTPRDFASDDDLRAFVRR
Ga0318575_105978821	3300032055	Soil	MAEILNAHGSRNDIFVTALTPGDFASETDLRTFVRNLCDRNG
Ga0318514_100696433	3300032066	Soil	MAEILNAHGSKNDIFVAAMTPRDFASGDDLRAFVRRLCDRAGPFA
Ga0318518_104181251	3300032090	Soil	MAEILNAHGSKNDIFVAAMTPRDFASADDLRAFVRRLCDRAGP
Ga0318577_104346252	3300032091	Soil	MAEILNAHGSLNDIFVTELAPGDFASDTDLRAFVRR
Ga0306920_1027482462	3300032261	Soil	MAEILNAHGSKNDIFVAAMTPRDFASDGGLRAFVRR
Ga0335085_117368142	3300032770	Soil	MTEILNAHGSKNDIFVAALTPRDFASDDDLRAFVRRLCDR
Ga0335078_110908601	3300032805	Soil	VAEILNAHGSKNDIFVAAMTPRDFASGDDLRAFVRRLCDRAGPFGGD
Ga0335083_104471141	3300032954	Soil	MAEILNAHGSKNDIFVVAMTPRDFASGDDLRAFVRRLCDRAGPFGGD
Ga0335076_109464192	3300032955	Soil	MAEILNAHGSKNDIFVAAMTPRDFASEEDLRAFVRRLCDRAGPFGG
Ga0335077_101767391	3300033158	Soil	MAEILNAHGSRNDIFVTALTPGDFASETDLRRFVRNLCDR
Ga0318519_102379351	3300033290	Soil	MAEILNAHGSLNDIFVTELTPGDFASETDLRAFVRRLCDRRGPFGGDGV

Hidden Markov Model


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