Metagenome / Metatranscriptome Family F088837

Overview

Basic Information

• Family ID: F088837
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 109
• Average Sequence Length: 42 residues
• Representative Sequence: LVVPPETPHGFRNTGDGPLLVVSVHESGTLQQTFLGEEPA
• Number of Associated Samples: 105
• Number of Associated Scaffolds: 109

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 11.01 %
• % of genes near scaffold ends (potentially truncated): 88.07 %
• % of genes from short scaffolds (< 2000 bps): 95.41 %
• Associated GOLD sequencing projects: 99
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (88.991 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.679 % of family members)
• Environment Ontology (ENVO): Unclassified (31.193 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (41.284 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 0.00%
  Coil/Unstructured: 100.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07883	Cupin_2	10.09
PF00501	AMP-binding	6.42
PF00561	Abhydrolase_1	5.50
PF00850	Hist_deacetyl	3.67
PF03795	YCII	2.75
PF07237	DUF1428	2.75
PF12704	MacB_PCD	2.75
PF12840	HTH_20	2.75
PF12697	Abhydrolase_6	2.75
PF13147	Obsolete Pfam Family	1.83

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0123	Acetoin utilization deacetylase AcuC or a related deacetylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	7.34
COG5507	Uncharacterized conserved protein YbaA, DUF1428 family	Function unknown [S]	2.75
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.75
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.92
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.92
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.92
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.92
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.92
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.92
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.92

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.99 %
Unclassified	root	N/A	11.01 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.99 %
Unclassified	root	N/A	11.01 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.99 %
Unclassified	root	N/A	11.01 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.61 %
Unclassified	root	N/A	11.01 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	34.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.26 %
Unclassified	root	N/A	11.01 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.42 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.75 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	1.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.75 %
Unclassified	root	N/A	11.01 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.92 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	0.92 %
Devosiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae	1.83 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	1.83 %
Miltoncostaeales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales	0.92 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.92 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.83 %
Unclassified	root	N/A	11.01 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.92 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.92 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Devosia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia	1.83 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	1.83 %
Miltoncostaeaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae	0.92 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.83 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.92 %
Unclassified	root	N/A	11.01 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.92 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.92 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Devosia geojensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia geojensis	1.83 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	1.83 %
Miltoncostaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	0.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.83 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Unclassified	root	N/A	11.01 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	0.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.92 %
Devosia geojensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Devosiaceae → Devosia → Devosia geojensis	1.83 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1.83 %
Miltoncostaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	0.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.83 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Unclassified	root	N/A	11.01 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459007|GKWS7RC02F4DY9	Not Available	519
2170459009|GA8DASG02IB5CK	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525
2189573003|GZIR7W402GZVFR	All Organisms → cellular organisms → Bacteria	500
3300004081|Ga0063454_101740888	All Organisms → cellular organisms → Bacteria	543
3300004114|Ga0062593_101855412	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664
3300004157|Ga0062590_100369689	All Organisms → cellular organisms → Bacteria	1158
3300004479|Ga0062595_101467031	All Organisms → cellular organisms → Bacteria	627
3300004479|Ga0062595_102535699	All Organisms → cellular organisms → Bacteria	512
3300004643|Ga0062591_101023212	All Organisms → cellular organisms → Bacteria	788
3300005179|Ga0066684_10570625	All Organisms → cellular organisms → Bacteria	759

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.97%
Host-Associated	Host-Associated	33.03%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.50%
Plants	Host-Associated → Plants	33.03%
Terrestrial	Environmental → Terrestrial	61.47%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Peat	Environmental → Terrestrial → Peat	1.83%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.34%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.85%
Roots	Host-Associated → Plants → Roots	0.92%
Sediment	Environmental → Aquatic → Sediment	4.59%
Soil	Environmental → Terrestrial → Soil	59.63%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.42%
Ice	Environmental → Aquatic → Freshwater → Ice	0.92%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.46%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.42%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.42%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.92%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.59%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.83%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.92%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.75%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.59%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.75%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_05081870	2170459007	Grass Soil	PPETLHGFRNLGEEPLLVVSVHEAPAIVQHFTDREPA
F47_11153470	2170459009	Grass Soil	VELEPDHVLVVPALTPHGFRNVGEKPLLVVSVHESGVLDQTFLGIEPA
FE2_05088610	2189573003	Grass Soil	AIELGPEGMLVVPPDTPHGFRNVGDVPLLVVSVHERGTLRQTWLGREPA
Ga0063454_1017408882	3300004081	Soil	IVPPNTPHGFRNTGASPLLVVSVHESGTLDQTFLGEEPA*
Ga0062593_1018554121	3300004114	Soil	VTEAEPDTVIVVPPETLHGFRNIGEEPLLVVSVHESGTLDQTFTDREPA*
Ga0062590_1003696891	3300004157	Soil	GRARAGGHAVVPPDTPHGFRNIADVPLLVVSVHERGTLRQTWLGEDPA*
Ga0062595_1014670312	3300004479	Soil	PNQMLVVPADTPHGFRNVGDVPLLVVTVHESGRLEQTFLGKEPA*
Ga0062595_1025356992	3300004479	Soil	LVPERILVVPANTPHGFRNVGKDPLLVVSVHESGTLEQTFLGREPA*
Ga0062591_1010232122	3300004643	Soil	QVLVVPPETPHGFRNTGDRPLLVVSIHESGTLEQTFVGGEPA*
Ga0066684_105706252	3300005179	Soil	QMLVVPPETPHGFRNTGEQSLLVVSVHESGTLEQTFLGRDPL*
Ga0070690_1001738343	3300005330	Switchgrass Rhizosphere	VVPPDTPHGFRNTGETPLLLFSVHDSGTLEQTFTGDEPA*
Ga0070691_110658592	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	GPDTVIVVPPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA*
Ga0070668_1010776342	3300005347	Switchgrass Rhizosphere	MHPDQMLVVPPNTPHGFRNIGDVPLLTVSIHASGELDQTFLGVNPA*
Ga0070669_1007278451	3300005353	Switchgrass Rhizosphere	LHANQMLVVPPETPHGFRNTGEEPLLVVSVHESGTLDQTFLGRDPD*
Ga0070671_1003190253	3300005355	Switchgrass Rhizosphere	ANQMLVVPPETPHGFRNTGEEPLLVVSVHESGTLDQTFLG*
Ga0070673_1008505741	3300005364	Switchgrass Rhizosphere	IVVPPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA*
Ga0070709_116940741	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLVVPPETPHGFRNIGEVPLLLVTVHESGTLQQTFLGVEPA*
Ga0070701_107536002	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LVVPPDTPHGFRNTGETPLLLFSVHDSGTLEQTFTGDEPA*
Ga0070684_1006232321	3300005535	Corn Rhizosphere	QMLVVPPETPHGFRNTGDGPLLVVSVHEAATLEQTFLGEEPA*
Ga0070672_1021037481	3300005543	Miscanthus Rhizosphere	TLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA*
Ga0066654_102707562	3300005587	Soil	PETPHGFRNTGDGPLLVVSVHEAGTLQQTFLGAEPDDV*
Ga0068852_1005432182	3300005616	Corn Rhizosphere	VPPETPHGFRNTGGGPLLVVSVHEAGTLQQTFLGEDSDEV*
Ga0066903_1006971841	3300005764	Tropical Forest Soil	PPETPHGFRNTGELPLLVVSIHESGSLEQTFLGRDPA*
Ga0066903_1025870042	3300005764	Tropical Forest Soil	NQMLVVPPETPHGFRNTGDGPLLVVSVHEAPTLQQTFLGDV*
Ga0068863_1015692391	3300005841	Switchgrass Rhizosphere	SIITVPPDTLHGFRNTGREPLLLVSVHESPTLVQEFTDDEPA*
Ga0070717_113716471	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	DLNANQMLVVPPETPHGFRNTGEHPLLLVSIHESGTLEQTFLGRDPA*
Ga0066652_1014510321	3300006046	Soil	PPETLHGFRNIGEDPLLVVSVHESGTLDQTFTDREPA*
Ga0075363_1009732561	3300006048	Populus Endosphere	PNTPHGFRNIGDVPLLVVSAHERGTLQQEWLGRDPA*
Ga0074062_129289501	3300006606	Soil	ANQMLVVPPDTPHGFRNTGSEPLLVVSIHAAGTLEQTFLGRDPA*
Ga0079220_117341911	3300006806	Agricultural Soil	TVELEPEGMLVVPPDTPHGFRNVGDVPLLVVSVHERGTLRQTWLGGDPA*
Ga0075421_1010403921	3300006845	Populus Rhizosphere	VIVVPPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA*
Ga0075419_114554751	3300006969	Populus Rhizosphere	TVIVVPPETLHGFRNIGEEPLLVVSVHESGTLDQTFTEQEPA*
Ga0105240_112958731	3300009093	Corn Rhizosphere	QMLVVPPETPHGFRNTGEGPLLLVSVHEGETLQQTFLDGGQ*
Ga0105245_108874542	3300009098	Miscanthus Rhizosphere	ETPHGFRNTGEGPLLLVSVHEGETLQQTFLDGGQ*
Ga0114129_127257511	3300009147	Populus Rhizosphere	TLHGFRNIGDEPLLVVSVHESGTLDQTFTDDEPA*
Ga0105243_116210583	3300009148	Miscanthus Rhizosphere	PPMTLHGFRNIGDEPLLVVSVHERGTLSQEFTDDPPA*
Ga0105241_126101872	3300009174	Corn Rhizosphere	PETPHGFRNTGDGPLLVVSVHEAPTLDQTFLGEEPA*
Ga0105249_102221972	3300009553	Switchgrass Rhizosphere	VVPADTPHGFRNVSDERLLVVSVHEADAVQQTWLGRDPA*
Ga0126307_104276932	3300009789	Serpentine Soil	SVFVVPPATLHGFRNIGDEPLLVVSVHESGTLDQTFTEDEPA*
Ga0126307_107681183	3300009789	Serpentine Soil	VVPPETLHGFRNVGDEPLLVVSVHESGTLDQAFTEEEPA*
Ga0126304_107610291	3300010037	Serpentine Soil	LVVPPETPHGFRNVGDEPLLVVSVHESGTLDQTFTEDEPA*
Ga0126315_104221863	3300010038	Serpentine Soil	RWTAGDQVAEAGPETVIVVPPDTLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA*
Ga0126312_111497363	3300010041	Serpentine Soil	VVPPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA*
Ga0105239_115027252	3300010375	Corn Rhizosphere	QVLVVPPETPHGFRNTGDRALLVVSVHESGTLEQTFVGGEPA*
Ga0126381_1036023161	3300010376	Tropical Forest Soil	TPHGFRNVGDDDLLVVSVHESPVLEQTFLGRDPA*
Ga0134127_122176792	3300010399	Terrestrial Soil	VVPPETPHGFRNTGGGPLLVVSVHEAGTLQQTFLGEDSDEV*
Ga0120153_10883851	3300011991	Permafrost	ANTLHGFRNIGDVPLLVVSVHESPTLIQEFLDEEPA*
Ga0136632_104588351	3300012093	Polar Desert Sand	PDTPHGFRNIGQVPLLVVSVHASGTLRQTWTGGEPA*
Ga0137382_107941682	3300012200	Vadose Zone Soil	MLVVPPDTPHGFRNAGDVPLLVVSVHERGTLRQTWLGRDPA*
Ga0137365_111180372	3300012201	Vadose Zone Soil	MELHANQMLVVPPQTPHGFWNTGEHPLLVVSIHVSGTLEQRLFGRDPA*
Ga0137404_117512141	3300012929	Vadose Zone Soil	TPHGFRNTGTTPLLVVSVHESGALDQTFLGVEPA*
Ga0164300_103252501	3300012951	Soil	DLHANQMLVVPSETPHGFRTTGEEPLLVVSVHEAGTLDQTILGRDPA*
Ga0164309_105421641	3300012984	Soil	TPHGFRNTGSEPLLVVSIHAAGTLEQTFLGRDPA*
Ga0163162_110772062	3300013306	Switchgrass Rhizosphere	MLVVPPNTPHGFRNIGDVPLLTVSIHESGEVDQTFLGVNPA*
Ga0157372_132583381	3300013307	Corn Rhizosphere	GRWTAGGQVTEPREDSIVVVPPETLHGFRNIGDVPLLVVSVHESGTLDQTFTDREPA*
Ga0173483_100683242	3300015077	Soil	MLVVPPDTPHGFRNVGEVPLLVVTVHESGTLEQEFLGVEPS*
Ga0132258_133504311	3300015371	Arabidopsis Rhizosphere	TPHGFRNTGQTPLLLVSVHESGTLEQTFLGIEPS*
Ga0184608_103652802	3300018028	Groundwater Sediment	IELEPEQMIVVPPDTPHGFRNIGDVPLLVVSMHERGTLRQTWLGEEPA
Ga0184620_101267022	3300018051	Groundwater Sediment	MIVVPPDTPHGFRNVGDVALLVVSVHERGTLRQTWLGEDPA
Ga0184619_104850581	3300018061	Groundwater Sediment	ELEPEDMIVVPPDTPHGFRNVGDVALLVVSVHERGTLRQTWLGEDPA
Ga0184617_10140103	3300018066	Groundwater Sediment	RDEETVELQPEGMLVVPPATPHGFRNVGHVPLLVVSVHERGTLRQTWLGADPA
Ga0184635_104188132	3300018072	Groundwater Sediment	ELEPEGMLVVPPDTPHGFRNIGDVALLVVSVHERGTLRQTWLGEEPA
Ga0190275_111606751	3300018432	Soil	MIVVPPDTPHGFRNIGDVPLLVVSAHDSGTLEQTWLDREPA
Ga0190275_121293762	3300018432	Soil	PDTPHGFRNIGDVPLLVVSVHESGTMRQEWLGEEPA
Ga0066662_119761771	3300018468	Grasslands Soil	LVVPPDTPHGFRNTGDVPLLVVSVHERGTLRQTWLGREPA
Ga0190264_107955161	3300019377	Soil	MAVAPPETLHGFRNIGDVPLLVVSVHDRGTLSQDFTDDAPA
Ga0210402_106247561	3300021478	Soil	MLVVPPETPHGFRNIGEEPLLVVSVHESGTVQQTFLGRDPA
Ga0207642_104415661	3300025899	Miscanthus Rhizosphere	MHPDQMLVVPPNTPHGFRNIGDVPLLTVSIHASGELDQTFLGVNPA
Ga0207643_100796541	3300025908	Miscanthus Rhizosphere	MTLHGFRNIGDEPLLVVSVHERGTLSQEFTDDPPA
Ga0207654_101497164	3300025911	Corn Rhizosphere	LHANQMLVVPPETPHGFRNTGEEPLLVVSVHESGTLDQTFLGRDPA
Ga0207657_110334131	3300025919	Corn Rhizosphere	QMLVVPPETPHGFRNTGDGPLLVVSVHESGTLQQTFLGEEPA
Ga0207694_100616071	3300025924	Corn Rhizosphere	VVPPETPHGFRNTGDGPLLVVSVHESGTLQQTFLGEEPA
Ga0207644_117710331	3300025931	Switchgrass Rhizosphere	EPDGMAIAPPMTLHGFRNIGDEPLLVVSVHERGTLSQEFTDDPPA
Ga0207690_113097531	3300025932	Corn Rhizosphere	QMLVVPPETPHGFRNTGEEPLLVVSVHESGTLDQTFLGRDPD
Ga0207670_111709272	3300025936	Switchgrass Rhizosphere	VSLFTPDTPHGFRNTGETPLLLFSVHDSGTLEQTFTGDEPA
Ga0207679_100848094	3300025945	Corn Rhizosphere	QMLVVPPETPHGFRNTGDGPLLVVSVHEAPTLEQTFLGEEPA
Ga0207641_123143502	3300026088	Switchgrass Rhizosphere	DSIITVPPDTLHGFRNTGREPLLLVSVHESPTLVQEFTDDEPA
Ga0207698_104173271	3300026142	Corn Rhizosphere	LVVPPETPHGFRNTGDGPLLVVSVHESGTLQQTFLGEEPA
Ga0209577_102369231	3300026552	Soil	DVRAERVISVPAETPHGFRNTGDAPLLVVAIHESPVLVQDFLGREPA
Ga0209462_101240453	3300027761	Agave	PPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA
Ga0209073_101623321	3300027765	Agricultural Soil	PNQMLVVPPETPHGFRNTGDEPLLVVSVHEAPTLQQTFLREEPA
Ga0209177_104328782	3300027775	Agricultural Soil	ADQMLVVPPETPHGFRNTGDQPLLVVSIHESGTLDQTFLGRDPA
Ga0207428_109220841	3300027907	Populus Rhizosphere	PMTLHGFRNIGDEPLLVVSVHERGTLSQEFTDDPPA
Ga0209382_118771411	3300027909	Populus Rhizosphere	VIVVPPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA
Ga0247818_112675082	3300028589	Soil	EGMLVVPPDTPHGFRNIGDVPLLLVSVHERGTLRQTWLGREPA
Ga0247822_108456281	3300028592	Soil	GETVTELSPNQMLVVPADTPHGFRNVSDVPLLVVTVHESGTLEQTFLGKEPA
Ga0307322_100951391	3300028710	Soil	EQMIVVPLDTPHGFRNIGDVPLLVVSMHERGTLRQTWLGEEPA
Ga0307319_102540802	3300028722	Soil	MLVVPPETPHGFRNTGEHPLLVVSIHESGRLDQTFLGREPA
Ga0307282_106033341	3300028784	Soil	VPPETPHGFRNTGEHPLLVVSIHESGTLDQTFLGREPA
Ga0307290_100845661	3300028791	Soil	QPEGMLVVPPDTPHGFRNVGEVPLLVVSVHERGTLRQTWLGEDPA
Ga0307287_101659492	3300028796	Soil	WTSGDDVVELEPEGMLVVPPDTPHGFRNIGDVALLVVSVHERGTLRQTWLGEEPA
Ga0247824_110095722	3300028809	Soil	PETPHGFRNIGEVPLLVVSVHERGTMRQAWLGRDPE
Ga0307312_105035541	3300028828	Soil	MLVVPPDTPHGFRNVGEVPLLVVSVHERGTLRQTWLGEDPA
Ga0307289_100319993	3300028875	Soil	VIELEPEQMIVVPPDTPHGFRNIGDVPLLVVSMHERGTLRQTWLGEEPA
Ga0307277_100093091	3300028881	Soil	EGMLVVPPDMPHGFRNVGEVPLLVVSVHERGTLRQTWLGEDPA
Ga0247827_104478301	3300028889	Soil	VVPPETLHGFRNIGDEELHVLSVHESGTLEQTFTEDEPA
Ga0307501_101690062	3300031152	Soil	LGDDEFHDIGDVPLLVVSVHERGTLRQTFLGSDRA
Ga0318516_104200932	3300031543	Soil	LCPSQLLVVPPETPHGFRNTGDEPLLVVSVHESGTLDQTFLGRDPV
Ga0318521_103546321	3300031770	Soil	QRLVVPPETPHGFRNIGDVPLLVVSVHEAGTVDQTWLGRDPA
Ga0307413_120032461	3300031824	Rhizosphere	AEAEPETVIVVPPETLHGFRKIGDEPLLVVSVHESGTLDQTFTEQEPA
Ga0310904_107110242	3300031854	Soil	LEPEQILTVPPDTPHGFRNIGDVPLLVVSVHERGTMRQTWLGEEPA
Ga0308175_1023242111	3300031938	Soil	VPPDTPHGFRNISDDPLLVVSIHESGTLEQTFLGREPA
Ga0307409_1001415153	3300031995	Rhizosphere	VPPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEQEPA
Ga0307411_114298981	3300032005	Rhizosphere	AVIVVPPETLHGFRNIGDEPLLVVSVHESGTLDQTFTEDEPA
Ga0307471_1042531651	3300032180	Hardwood Forest Soil	VVPALTPHGFRNIGEKPLLVVSVHESGVLDQTFLGIEPA
Ga0310810_107470952	3300033412	Soil	PDTPHGFRNTGEQPLLVVSVHESGTLDQTFLGRDPA
Ga0326726_114539792	3300033433	Peat Soil	WTAGDDIVDLRANQMLVVPPETPHGFLNTGADPLLVVSVHESGTLDQTFLGSDPA
Ga0247830_114895251	3300033551	Soil	DEMIVVPPDTPHGFRNVGDVPLLVVSVHERGTLRQTWLGKDPA
Ga0326723_0239716_680_805	3300034090	Peat Soil	MLVVPPETPHGFRNTGEQPLLVVSIHESGTLEQTFLGRDPA