Basic Information | |
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Family ID | F088522 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 109 |
Average Sequence Length | 53 residues |
Representative Sequence | GLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Number of Associated Samples | 81 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 2.27 % |
% of genes near scaffold ends (potentially truncated) | 37.61 % |
% of genes from short scaffolds (< 2000 bps) | 39.45 % |
Associated GOLD sequencing projects | 75 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (74.312 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (39.450 % of family members) |
Environment Ontology (ENVO) | Unclassified (59.633 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (55.963 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 47.06% β-sheet: 1.96% Coil/Unstructured: 50.98% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater Lake Freshwater Lentic Freshwater Freshwater Lake Freshwater Lake Freshwater Lake Sediment Lake Sediment Freshwater Deep Subsurface Aqueous Freshwater To Marine Saline Gradient Marine Estuarine Salt Marsh Estuarine Water |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
GOS2236_10359076 | 3300001968 | Marine | VGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
JGI25910J50241_100502734 | 3300003388 | Freshwater Lake | AGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS* |
JGI25907J50239_11008213 | 3300003394 | Freshwater Lake | GPAGLPVLREILQITATVLASAIIVTSGQPGVLEIGGQEFPCYDLTCAIAARTA* |
JGI25911J50253_101905782 | 3300003411 | Freshwater Lake | LQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS* |
Ga0049081_101081163 | 3300005581 | Freshwater Lentic | KVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
Ga0049081_101942852 | 3300005581 | Freshwater Lentic | KVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGVQAQTA* |
Ga0049085_102418391 | 3300005583 | Freshwater Lentic | GSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA* |
Ga0079957_13059822 | 3300005805 | Lake | GLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPSYDLSVGVQAQTA* |
Ga0075470_101259402 | 3300006030 | Aqueous | GNGNIVRMDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQTA* |
Ga0070749_107525251 | 3300006802 | Aqueous | GLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT* |
Ga0075467_101189551 | 3300006803 | Aqueous | ILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA* |
Ga0075464_103976521 | 3300006805 | Aqueous | SGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA* |
Ga0075464_108489172 | 3300006805 | Aqueous | IVRMDYPIKVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDVGGQEYPCYDISVGVQAQTA* |
Ga0070754_101915241 | 3300006810 | Aqueous | VRMDYPIKIVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT* |
Ga0075475_101792861 | 3300006874 | Aqueous | PIKIVGSGPAGLPVLREILQISATVLGSDIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
Ga0070748_13212862 | 3300006920 | Aqueous | VLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLTVGVQAQTA* |
Ga0075460_102262721 | 3300007234 | Aqueous | QITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
Ga0070745_13138802 | 3300007344 | Aqueous | AGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLLVGVQAQTA* |
Ga0099847_12451872 | 3300007540 | Aqueous | VLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
Ga0099846_11552091 | 3300007542 | Aqueous | AGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
Ga0099846_11610781 | 3300007542 | Aqueous | TTIAGNGNIVRMDYPIKVVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPGYNLSVGVQAQTA* |
Ga0102861_11561732 | 3300007544 | Estuarine | PAGLPVLREILQISATVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA* |
Ga0102863_10610541 | 3300007622 | Estuarine | QITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS* |
Ga0102862_11818291 | 3300007670 | Estuarine | QITALVLGSSVIAMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
Ga0104242_10446601 | 3300008962 | Freshwater | VIRVDFPVKVVGSGPAGLPVLREILQISATVLGSSIIVTSGQPSTLEIGGQEFPCYDLTCALAGITA* |
Ga0105152_101408661 | 3300009039 | Lake Sediment | AGLPVLREILQITATVLGSSVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA* |
Ga0102860_10939163 | 3300009056 | Estuarine | REILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA* |
Ga0114978_103608571 | 3300009159 | Freshwater Lake | KIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDLAVGVQAQTA* |
Ga0114919_104503443 | 3300009529 | Deep Subsurface | IVRVDFPIKVIGSGPAGLPVLREILQITATVLGSTVIVMSGRPGTLEVGGQEYPCYDLAVGMQAQTA* |
Ga0114919_110764822 | 3300009529 | Deep Subsurface | GNIVRVDFPIKVIGSGPAGLPVLREILQITATVLVSTVIVMSGRPGTLEVGGQEYPCYDLAVGMQAQTA* |
Ga0136655_12462331 | 3300010316 | Freshwater To Marine Saline Gradient | TVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA* |
Ga0129318_101376921 | 3300011009 | Freshwater To Marine Saline Gradient | GLPVLREILQITALVLGSSVIAMSGRPDTLDIGGQEYPCYDVAVGLQAQSA* |
(restricted) Ga0172367_102337584 | 3300013126 | Freshwater | GSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA* |
(restricted) Ga0172373_103805821 | 3300013131 | Freshwater | VLREILQIASSVLGSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA* |
(restricted) Ga0172373_107940431 | 3300013131 | Freshwater | SGPAGLPVLREILQIASSVLGSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA* |
(restricted) Ga0172372_105282381 | 3300013132 | Freshwater | AGLPVLREILQIASSVLGSTVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA* |
Ga0181339_10155702 | 3300017700 | Freshwater Lake | MDYPIKIVGSGPAGLPVLREILQITALVLGSSIIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181339_10332042 | 3300017700 | Freshwater Lake | GPAGLPVLREILQITALVLGSSIIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181364_10211681 | 3300017701 | Freshwater Lake | ITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181363_10949421 | 3300017707 | Freshwater Lake | FPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181350_10559543 | 3300017716 | Freshwater Lake | AGNGNIVRMDFPIKVVGSGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0181350_11039831 | 3300017716 | Freshwater Lake | VGSGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0181350_11129701 | 3300017716 | Freshwater Lake | ILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0181350_11150172 | 3300017716 | Freshwater Lake | ALVLGSCDIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0181350_11222892 | 3300017716 | Freshwater Lake | TALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0181350_11710061 | 3300017716 | Freshwater Lake | PAGLPVLREILQITATVLGSAIIITSGQPGVLEIGGQEYPCYDLTCGIAARTA |
Ga0181362_10426171 | 3300017723 | Freshwater Lake | GNGSIVRMDFPNKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181362_10771902 | 3300017723 | Freshwater Lake | GSGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0181365_10757753 | 3300017736 | Freshwater Lake | NNCSGAVGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0181365_10985661 | 3300017736 | Freshwater Lake | NVWSAAAGFSELREILQISALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181344_11347221 | 3300017754 | Freshwater Lake | SGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0181356_11346523 | 3300017761 | Freshwater Lake | PVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181358_12134141 | 3300017774 | Freshwater Lake | GSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA |
Ga0181358_12481992 | 3300017774 | Freshwater Lake | GPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0181357_10862154 | 3300017777 | Freshwater Lake | ALVLGSSIIAMSGRPGTLDIGGQEYPCYDLSVGVQAQTA |
Ga0181349_11450443 | 3300017778 | Freshwater Lake | QITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0181349_11566553 | 3300017778 | Freshwater Lake | LREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0181349_11576833 | 3300017778 | Freshwater Lake | SGPAGLPVLREILQITATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0181349_12871162 | 3300017778 | Freshwater Lake | GNIVRMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQST |
Ga0181346_11781592 | 3300017780 | Freshwater Lake | RMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTT |
Ga0181346_11917491 | 3300017780 | Freshwater Lake | IKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0181346_13163992 | 3300017780 | Freshwater Lake | VRMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQST |
Ga0181355_13191752 | 3300017785 | Freshwater Lake | YPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0181355_13535251 | 3300017785 | Freshwater Lake | IAGNGNIVRMDFPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLEIGGQEYPCYDVAVGLQAQST |
Ga0181563_102066041 | 3300018420 | Salt Marsh | GSGPAGLPVLREILQISATVLGSSIIVTSGQPSTLEIGGQEFPCYDLTCALAGITA |
Ga0194112_105040093 | 3300020109 | Freshwater Lake | ILQIASSVLGSSVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA |
Ga0211736_105546501 | 3300020151 | Freshwater | PAGLPVLREILQITATVLGSSVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTT |
Ga0194130_106163851 | 3300021376 | Freshwater Lake | AGLPVLREILQIASSVLGSSVVAMSGRPGSLEIGGQEFPSYDMTVGMQAQTA |
Ga0222715_107124161 | 3300021960 | Estuarine Water | EILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA |
Ga0222712_105926651 | 3300021963 | Estuarine Water | TVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA |
Ga0181353_11357341 | 3300022179 | Freshwater Lake | LGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA |
Ga0181354_11211723 | 3300022190 | Freshwater Lake | IKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0181354_11930132 | 3300022190 | Freshwater Lake | GEILQITALVLGSRVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0181351_11917471 | 3300022407 | Freshwater Lake | PIKIVGSGSAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQS |
Ga0181351_12456612 | 3300022407 | Freshwater Lake | AGLPVLREILQITATVLGSAIIITSGQPGVLEIGGQEYPCYDLTCGIAAQTA |
Ga0255217_10344272 | 3300024282 | Freshwater | VRMDFPIKIVGSGPAGLPVLREILQISATVLGSAIIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA |
Ga0209986_102964161 | 3300024433 | Deep Subsurface | ATVLGSTVIVMSGRPGTLEVGGQEYPCYDLAVGMQAQTA |
Ga0255189_10022885 | 3300024492 | Freshwater | VLREILQISATVLGSAIIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA |
Ga0255195_10155253 | 3300024499 | Freshwater | TTIAGNGNIVRMDFPIKIVGSGPAGLPVLREILQISATVLGSAIIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA |
Ga0208546_10910942 | 3300025585 | Aqueous | GNIVRMDYPIKIVGSGPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0208147_10502421 | 3300025635 | Aqueous | GPAGLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA |
Ga0208147_11617331 | 3300025635 | Aqueous | ILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLSVGVQAQTA |
Ga0208019_10544211 | 3300025687 | Aqueous | SGPAGLPVLREILQISATVLASAIIVTSGRPGVLEIGGQEYPCYDLTCGIAARTA |
Ga0208784_12018562 | 3300025732 | Aqueous | VLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0208645_11998891 | 3300025853 | Aqueous | LQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT |
Ga0208644_13726011 | 3300025889 | Aqueous | GLPVLREILQITATVLGSAIIVMSGRPGTLDIGGQEYPCYDLAVGMQAQTT |
Ga0208916_103669642 | 3300025896 | Aqueous | GSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0208916_105100722 | 3300025896 | Aqueous | ISATVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA |
Ga0255091_10455481 | 3300027487 | Freshwater | GLLVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0209553_12056421 | 3300027688 | Freshwater Lake | VLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0209443_11501711 | 3300027707 | Freshwater Lake | LQISATVLGSAVIVMSGRPGTLEIGGQEYPCYDLAVGVQAQTA |
Ga0209443_12621402 | 3300027707 | Freshwater Lake | TVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0209442_10803721 | 3300027732 | Freshwater Lake | DYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0209246_100223496 | 3300027785 | Freshwater Lake | DFPIKVVGSGPAGLPVLREILQITATVLGSSVVVMSGRPGTLEIGGQEYPCYDLELGMQAQTA |
Ga0209246_100314975 | 3300027785 | Freshwater Lake | ATVLGSTIVAMSGRPGTLDIGGQEYPCYDMAVGLQAQTA |
Ga0209354_101102561 | 3300027808 | Freshwater Lake | ILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0315274_109055101 | 3300031999 | Sediment | DYPIKIVGSGPAGLPVLREILQITALVLESSVIAMSGRPGTLDIGGQEYPCYDVAIGLQAQSS |
Ga0315274_114144112 | 3300031999 | Sediment | IVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0315276_111154123 | 3300032177 | Sediment | KVVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSS |
Ga0315276_115219611 | 3300032177 | Sediment | GSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0334982_0130466_469_621 | 3300033981 | Freshwater | MPVLREILQITATVLASAIIVTSGQPGVLEIGGQEFPCYDLTCAIAARTA |
Ga0335003_0149036_997_1164 | 3300033995 | Freshwater | TGPAGLPVLREILQITATVLASAIIVTSGQPGVLEIGGQEFPCYDLTCAIAARTA |
Ga0334985_0420723_565_759 | 3300034018 | Freshwater | MDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTT |
Ga0335027_0666890_1_120 | 3300034101 | Freshwater | ALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0335035_0541402_471_626 | 3300034105 | Freshwater | GLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0335036_0092490_1_186 | 3300034106 | Freshwater | PIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQT |
Ga0335060_0269856_2_154 | 3300034122 | Freshwater | LPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
Ga0335039_0593939_317_511 | 3300034355 | Freshwater | MDYPIKIVGSGPAGLPVLREILQITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQSA |
Ga0335048_0390896_565_690 | 3300034356 | Freshwater | ITALVLGSSVIAMSGRPGTLDIGGQEYPCYDVAVGLQAQTA |
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