Metagenome Family F088514

Overview

Basic Information

• Family ID: F088514
• Family Type: Metagenome
• Number of Sequences: 109
• Average Sequence Length: 43 residues
• Representative Sequence: AASHEFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPWQR
• Number of Associated Samples: 99
• Number of Associated Scaffolds: 109

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 0.92 %
• % of genes near scaffold ends (potentially truncated): 100.00 %
• % of genes from short scaffolds (< 2000 bps): 96.33 %
• Associated GOLD sequencing projects: 95
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (92.661 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (10.092 % of family members)
• Environment Ontology (ENVO): Unclassified (38.532 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (47.706 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 46.38%
  β-sheet: 0.00%
  Coil/Unstructured: 53.62%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01970	TctA	90.83
PF07331	TctB	4.59
PF01019	G_glu_transpept	1.83
PF00486	Trans_reg_C	0.92
PF00149	Metallophos	0.92
PF02601	Exonuc_VII_L	0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1784	TctA family transporter	General function prediction only [R]	90.83
COG3333	TctA family transporter	General function prediction only [R]	90.83
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.83
COG1570	Exonuclease VII, large subunit	Replication, recombination and repair [L]	0.92

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.66 %
Unclassified	root	N/A	7.34 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.66 %
Unclassified	root	N/A	7.34 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.66 %
Unclassified	root	N/A	7.34 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.30 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.26 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	33.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %

Level 6

Name	Rank	Taxonomy	Distribution
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	24.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.59 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	2.75 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.83 %

Level 7

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	3.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.67 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.83 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	2.75 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %

Level 8

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.67 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.83 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.92 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples	3.67 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	2.75 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %

Level 9

Name	Rank	Taxonomy	Distribution
Agrobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium	0.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.83 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.83 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.92 %
Pseudomonas syringae group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group	2.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.67 %
uncultured Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	3.67 %

Level 10

Name	Rank	Taxonomy	Distribution
Agrobacterium vitis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium vitis	0.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.83 %
Bradyrhizobium sp. DOA9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	3.67 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.83 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.92 %
Pseudomonas syringae group genomosp. 1	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1	2.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %
uncultured Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	3.67 %

Level 11

Name	Rank	Taxonomy	Distribution
Agrobacterium vitis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Agrobacterium → Agrobacterium vitis	0.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.83 %
Bradyrhizobium sp. DOA9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	3.67 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.83 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	0.92 %
Pseudomonas syringae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas syringae group → Pseudomonas syringae group genomosp. 1 → Pseudomonas syringae	2.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	7.34 %
uncultured Acetobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → environmental samples → uncultured Acetobacteraceae bacterium	3.67 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300005177|Ga0066690_10503322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	815
3300005187|Ga0066675_10022956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	3549
3300005218|Ga0068996_10161541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	558
3300005293|Ga0065715_10847931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	592
3300005328|Ga0070676_10792019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	699
3300005334|Ga0068869_101869050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	538
3300005345|Ga0070692_10957754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	596
3300005364|Ga0070673_100467176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1137
3300005437|Ga0070710_11058367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	594
3300005455|Ga0070663_101095819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	696

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	60.55%
Host-Associated	Host-Associated	39.45%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	7.34%
Plants	Host-Associated → Plants	39.45%
Terrestrial	Environmental → Terrestrial	53.21%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.92%
Freshwater	Environmental → Aquatic → Freshwater	3.67%
Marine	Environmental → Aquatic → Marine	1.83%
Peat	Environmental → Terrestrial → Peat	11.01%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.85%
Sediment	Environmental → Aquatic → Sediment	1.83%
Soil	Environmental → Terrestrial → Soil	41.28%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.09%
Lake	Environmental → Aquatic → Freshwater → Lake	1.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.76%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.50%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.83%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.42%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.83%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.76%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.17%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.92%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.75%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	10.09%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.92%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.83%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.92%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.34%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental
3300005218	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2	Environmental
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066690_105033222	3300005177	Soil	TIVLIVLSSAASPEFRPKEALISGVLLAALAVGVFVIALKLQLQIWPWTSGILPWSS*
Ga0066675_100229561	3300005187	Soil	TASHEFRPKEALISGVLFAALAAGVFVFGLNLQLPLWPWSN*
Ga0068996_101615411	3300005218	Natural And Restored Wetlands	LLIVAASAASREFRLRESIVAGCILAAVAVGVFVIGLKLQLPIWPVLR*
Ga0065715_108479311	3300005293	Miscanthus Rhizosphere	ASHEFRFKESVIAGLLLSGLAVGVFVVGLSVQLPIWPTFLRH*
Ga0070676_107920192	3300005328	Miscanthus Rhizosphere	WMGVALSTVILIVAARAASREFRPREALIAGVLLATLAVGVFVIGLQLQLPIWPGQR*
Ga0068869_1018690502	3300005334	Miscanthus Rhizosphere	ASAGSHEFRPKEAVISGVLLAALAVGVFIVGLSLQLPIWPGQG*
Ga0070692_109577542	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	SREFRPKEALIAGVLLATLAVGVFVVGLKLQLPIWPTFFG*
Ga0070673_1004671762	3300005364	Switchgrass Rhizosphere	SAASREFRPLESAVSGILLAILCISVFVLALKLQLPIWPSFD*
Ga0070710_110583671	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ASHEFRPRESLIVGVVLAALAVGVFVVGLQLQLPIWPGQQ*
Ga0070663_1010958192	3300005455	Corn Rhizosphere	ILIVLASAGSHEFRPKEAVISGVLLAALAVGVFIVGLSLQLPIWPGQG*
Ga0070663_1013700111	3300005455	Corn Rhizosphere	AVSTVILVVVASAASREFRPREALLSGIVLAALAVGVFVVGLSLQLPIWPGQP*
Ga0070707_1008424151	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VASSAASGEFRAKEALISGIVLAALVVGVFVIGLKIQLPIWPGSG*
Ga0070679_1008936162	3300005530	Corn Rhizosphere	ALSTVILIVVASAASSEFRPRESLVAGVLLAALAVGVFVIGLQLQLPIWPLQQ*
Ga0070686_1007535132	3300005544	Switchgrass Rhizosphere	ILLIVMSSAASSEFRPKEAVISGILLAVLAVGVFVIGLKLQIGIWPGQR*
Ga0070693_1005980282	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	IVVASAASPEFRPRESLVAGLLLAALAVGVFVVGLQLQLPIWPGQA*
Ga0070665_1021091301	3300005548	Switchgrass Rhizosphere	LSTVILIVAASAASREFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPGQQ*
Ga0066670_110369472	3300005560	Soil	SAASHEFRPKEALISGILLAALAVGVFVLGLKLVIPIWPGSG*
Ga0068854_1012041882	3300005578	Corn Rhizosphere	VILIVAASAASREFRPREALIAGVLLATLAVGVFVIGLQLQLPIWPGQR*
Ga0068854_1012483121	3300005578	Corn Rhizosphere	GASAASHEFRFKESVIAGLLLSGLAVGVFVVGLSVQLPIWPTFLRH*
Ga0066706_112975231	3300005598	Soil	TIVLIVLSSAASPEFRPKEAFISAVLLAALAVGVFVIGLKLQLQIWPWTSGILPWSS*
Ga0068861_1001520143	3300005719	Switchgrass Rhizosphere	TASAASHEFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPWQR*
Ga0066903_1041063021	3300005764	Tropical Forest Soil	SPEFRPKESVIAGIALAALSVAVFVIALKLQLPIWPQFD*
Ga0068870_106816912	3300005840	Miscanthus Rhizosphere	STVILIVAASAASREFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPGQQ*
Ga0068862_1001986271	3300005844	Switchgrass Rhizosphere	PRESLIAGVLLAALAVGVFVIGLQLQLPIWPWQR*
Ga0068862_1014703742	3300005844	Switchgrass Rhizosphere	RFKESVIAGLLLSGLAVGVFVVGLSVQLPIWPTFLRH*
Ga0075284_10588951	3300005885	Rice Paddy Soil	LILIVTSSAASREFRPREALLAGIVLATLAVGVFVVGLQIQLPIWPGQD*
Ga0079221_114299271	3300006804	Agricultural Soil	SHEFRPREAVISGVLLAALASLVFIVGLGVQLPIWPLQR*
Ga0079219_112689382	3300006954	Agricultural Soil	IVAASAASHEFRPRESLFVGVLLAALAVGVFVVGLQLQLPIWPGQA*
Ga0111539_116841052	3300009094	Populus Rhizosphere	VASSAASHEFRPKEAVVAGVLLSALAVGVFVIGLSLQLPIWPVLGR*
Ga0111538_103589593	3300009156	Populus Rhizosphere	GAIIVAASAASHEFRPKESVIAGVLLGALAVGVFIIGLKLQLPIWPFQH*
Ga0075423_101077461	3300009162	Populus Rhizosphere	HEFRPREAVMSGVLLAALAVGVFIVGLSLQLPIWPDFS*
Ga0105248_109637462	3300009177	Switchgrass Rhizosphere	VLSSAASAEFRPREAVVSSVLLAAVVVGVFVFGLHLQLPIWPGAK*
Ga0126383_123535371	3300010398	Tropical Forest Soil	FRLKEASISAVLLAALAVGVFVIGLKLQLPVWPWSN*
Ga0134122_124676901	3300010400	Terrestrial Soil	PKEALVSGILLAILAVGVFVIGLKLQIGIWPGAR*
Ga0134121_104696152	3300010401	Terrestrial Soil	SSAASHEFRPKEALVSGILLAILAVGVFVIGLKLQIGIWPGAR*
Ga0137463_11348901	3300011444	Soil	RPKEAVISGILLAMLAVGVFVVGLKLQVPIWPTFLQG*
Ga0157333_10363082	3300012484	Soil	ASSEFRPRESLVAGVLLAALAVGVFVIGLQLQLPIWPLQQ*
Ga0157301_104044572	3300012911	Soil	AASHEFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPWQR*
Ga0157302_100726831	3300012915	Soil	VASAASSEFRPRESLVAGVLLAALAVGVFVIGLQLQLPIWPLQP*
Ga0134087_103568712	3300012977	Grasslands Soil	VGSSAASPEFRPREALIVGVLLAALAVGVFVIGLKLQLPIWPAFVS*
Ga0164304_109909332	3300012986	Soil	IVTASAASHEFRPRESLVAGVLLAALAVGVFVVGLQLQLPIWPGQD*
Ga0157373_102465122	3300013100	Corn Rhizosphere	FRPRESLVAGLLLSALAVGVFVIGLQLQLPIWPLQP*
Ga0157372_120107742	3300013307	Corn Rhizosphere	EFRPRESLVVGVLLAALAVGVFVVGLQLQLPIWPGQA*
Ga0157372_121690322	3300013307	Corn Rhizosphere	PRESLVVGVLLAALAVGVFVVGLKLQLPIWPGQA*
Ga0120127_100106752	3300013503	Permafrost	VTASAASHEFRPREALIAGVLLAALAVGVFVIGLQLQLPIWPGQA*
Ga0182008_105387752	3300014497	Rhizosphere	LSTVILVVVASAASREFRAREALISGIVLAALAVGVFVVGLSLQLPIWPGQP*
Ga0180083_11328422	3300014875	Soil	ASAASREFRPKESIVAGLLLAALAVGVFVVGLHLQLPIWPTFI*
Ga0167638_10628102	3300015197	Glacier Forefield Soil	ASSTASPEFRPKEALISGILFAALAAGVFIFGLNLQLPLWPWSN*
Ga0132256_1007543171	3300015372	Arabidopsis Rhizosphere	PEFRPKESLVSGMALAVLSIAVFVVALKLQLPIWPSFS*
Ga0132257_1019739731	3300015373	Arabidopsis Rhizosphere	IVTASAASREFRPRESLLAGLVLAALAVSVFVIGLKLQLPIWPGQD*
Ga0132257_1027656302	3300015373	Arabidopsis Rhizosphere	SSAASHEFRPKEAVISGILLSALAVGGFVIGLKLQIGIWPGQR*
Ga0132255_1016803122	3300015374	Arabidopsis Rhizosphere	PRESLIVGVLLAALAVGVFVIGLKLQLPIWPAFVS*
Ga0132255_1062612301	3300015374	Arabidopsis Rhizosphere	PKESVVSGIALAVLTVTVFVLVLKLQLPIWPQFG*
Ga0182038_109146772	3300016445	Soil	FRPLESVVSGIFLAVLSISVFVIALKLQLPIWPSFD
Ga0066669_103402791	3300018482	Grasslands Soil	RPREALIAGILLAALAVGVFVIGLKLQLPIWPAFIR
Ga0207682_104616801	3300025893	Miscanthus Rhizosphere	NWLGLVFSTMLLIVLSSAASTEFRPKEAVISGVLLAALAVGVFIIGLKLQMGIWPGSR
Ga0207688_104513521	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	ILIVAASAASREFRPREALIAGVLLATLAVGVFVIGLQLQLPIWPGQR
Ga0207680_102600091	3300025903	Switchgrass Rhizosphere	EFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPWQR
Ga0207645_102432021	3300025907	Miscanthus Rhizosphere	SAASHEFRPKESVIAGVLLGALAVGVFIIGLKLQLPIWPFQH
Ga0207707_111067482	3300025912	Corn Rhizosphere	LKAFWGRPLSTVLLIVMSSAASHEFRPKEAVISGILLAILAVGVFVIGLKLQ
Ga0207671_103753531	3300025914	Corn Rhizosphere	HEFRPREAVMSGVLLAALAVGVFIVGLSLQLPIWPDFS
Ga0207650_105119952	3300025925	Switchgrass Rhizosphere	ALSTVILIVVASAASSEFRPRESLVAGVLLAALAVGVFVIGLQLQLPIWPLQQ
Ga0207650_112045872	3300025925	Switchgrass Rhizosphere	AASHEFRLKESIIAGLLLSALAVGVFVVGLGVQLPIWPAFLRG
Ga0207701_109435452	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	STVILIVAASAASREFRPREALIAGVLLATLAVGVFVIGLQLQLPIWPGQR
Ga0207690_105670151	3300025932	Corn Rhizosphere	SHEFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPWQR
Ga0207704_107245191	3300025938	Miscanthus Rhizosphere	ASHEFRPKEAVISGILLAILAVGVFVIGLKLQIGIWPGGH
Ga0207704_113337731	3300025938	Miscanthus Rhizosphere	GASAASHEFRFKESVIAGLLLSGLAVGVFVVGLSVQLPIWPTFLRH
Ga0207711_102076983	3300025941	Switchgrass Rhizosphere	TEFRPKEAVISGVLLAALAVGVFIIGLKLQMGIWPGSR
Ga0207711_116435532	3300025941	Switchgrass Rhizosphere	VLSSAASAEFRPREAVVSSVLLAAVVVGVFVFGLHLQLPIWPGAK
Ga0210134_10346452	3300025950	Natural And Restored Wetlands	RPREAVISGIALAVLVVGVFAIGLKLQIGIWPGTP
Ga0207651_106334842	3300025960	Switchgrass Rhizosphere	LSTVILIVTASAASSEFRPRESLAAGVLLAALAVGVFVIGLQLQLPIWPLQQ
Ga0207658_120776142	3300025986	Switchgrass Rhizosphere	AARHEFRLKESIISGILLSALAVGVFVIGLSLQLPIWPTFIGG
Ga0208540_10344182	3300026059	Natural And Restored Wetlands	VMASAASHEFRPREAVISGIALAVLVVGVFAIGLKLQIGIWPGTP
Ga0207641_110131211	3300026088	Switchgrass Rhizosphere	AASHEFRPKEAVISGILLAILAVGVFVIGLKLQIGIWPGGH
Ga0207683_115987002	3300026121	Miscanthus Rhizosphere	SAASMEFRPKEALVSGIALAVLSIAVFVIALKLQMPIWPAFD
Ga0209057_11490291	3300026342	Soil	PEFRPREALIAGVLLAALAVGVFVIGLKLQLPIWPAFVS
Ga0209706_105763121	3300027818	Freshwater Sediment	SASREFRPKEALISGVFLSALAVGVFVIGLKLQLPIWPWTR
Ga0209668_108718282	3300027899	Freshwater Lake Sediment	AGLVLSTILLIVMASAASHEYRPREAVISGIALAALAVGVFVIGLKLQIGIWPGAH
Ga0268266_118197901	3300028379	Switchgrass Rhizosphere	LSTVILIVAASAASREFRPRESLIAGVLLAALAVGVFVIGLQLQLPIWPGQQ
Ga0302259_11286601	3300028861	Fen	FRLRESIIAGVFLAVLAVGVFIIGLHLQLPIWPEFSR
Ga0311332_113113602	3300029984	Fen	EFRPKEATIAGVLLAALAVGVFVIGLKLQVPIWPTFLQA
Ga0311334_100734253	3300029987	Fen	RPKEAVISGVFLAALAVGVFVVGLKLQLPIWPSFL
Ga0311336_104907171	3300029990	Fen	PEFRPKEAVISGVFLAALAVGVFVVGLKLQLPIWPSFL
Ga0311337_112652431	3300030000	Fen	ASAASHEFRLRESIIAGVFLAVLAVGVFIIGLHLQLPIWPEFSR
Ga0302172_102619922	3300030003	Fen	ASWASPEFRLKESLISGVLLAALVVGVFVIGLKLQLPIWPGGLG
Ga0311348_112955321	3300030019	Fen	ASPEFRLKESLISGVLLAALVVGVFVIGLKLQLPIWPGGLG
Ga0302217_101099782	3300030052	Fen	VLASWASPEFRLKESLISGVLLAALVVGVFVIGLKLQLPIWPGGLG
Ga0311360_101664211	3300030339	Bog	KEALISGVFLAALAVGVFIIGLKLQLPIWPPFLQG
Ga0311335_112873812	3300030838	Fen	FRPRESIIAGVFLAVLAVGVFIIGLHLQLPIWPEFSR
Ga0302323_1010638222	3300031232	Fen	SEFRWKESLVSGVFLAVLAVSVFVIGLKLQLPIWPTFLHG
Ga0302321_1021420051	3300031726	Fen	PEFRLKESLISGVLLAALVVGVFVIGLKLQLPIWPGGLG
Ga0315290_109465061	3300031834	Sediment	HEFRPREAVISGIALAALAVGVFVIGLKLQIGIWPGAH
Ga0306925_111207871	3300031890	Soil	TVVLIVLASSASPEFRPKESVVSGIALAVLSISVFVIGLKLQLPIWPALG
Ga0308176_122469492	3300031996	Soil	KESIVAGLLLSALAVGVFVVGLGVQLPVWPAFLRG
Ga0318562_102187192	3300032008	Soil	IVNTVGLVFSTIALIVLASSASPEFRPMESLVSGALLAILAVCVFVIGLKLQIGIWPWSS
Ga0318563_100246501	3300032009	Soil	ASSASPEFRPKESVVSGIALAVLSISVFVIGLKLQLPIWPALG
Ga0310906_113818251	3300032013	Soil	AASHEFRPKESVIAGVLLGALAVGVFIIGLKLQLPIWPFQH
Ga0318553_104437042	3300032068	Soil	IVLASSASPEFRPKESVVSGIALAVLSISVFVIGLKLQLPIWPALG
Ga0308173_112703711	3300032074	Soil	SAASHEFRLKESIIAGLLLSALAVGVFVVGLGVQLPIWPTFLRS
Ga0307470_110883871	3300032174	Hardwood Forest Soil	VLASAASPEFRPRESLISGIALAVLSISVFVIALKLQLPIWPAFG
Ga0307472_1002683731	3300032205	Hardwood Forest Soil	VLASSASPEFRPKESIISGIALAALSVAVFVIALKLQLPIWPQFD
Ga0306920_1011114422	3300032261	Soil	IVLASSASPEFRPMESLVSGALLAILAVCVFVIGLKLQIGIWPWSS
Ga0315287_128198451	3300032397	Sediment	AASHEYRPREAVISGIALAALAVGVFVIGLKLQIGIWPGAH
Ga0310810_108530921	3300033412	Soil	AASAASHEFRPRESLVVGVLLAALAVGVFVVGLQLQLPIWPGQA
Ga0316622_1022286102	3300033416	Soil	SREFRPREALVSGALLSALAVGVFVIGLNLQLPIWPGGR
Ga0316622_1028726521	3300033416	Soil	ASAASHEFRPKEAVISGLLLAALAVGVFVIGLKLQIGIWPGSR
Ga0316627_1005079392	3300033482	Soil	SREFRPREALVSGVLLALLAVGVFVVGLKLQLPVWPVLG
Ga0316621_102749902	3300033488	Soil	RPREALVSGVLLALLAVGVFVVGLKLQLPVWPVLG
Ga0364943_0084679_973_1089	3300034354	Sediment	FRWKEALISGGLLAVLAVGVFIIGLKLQLPIWPVFLHG