NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088485

Metagenome Family F088485

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088485
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 46 residues
Representative Sequence LAGAGATGAAEERGSRVADALDVPLVDLRHAWETGLSRALGWEAS
Number of Associated Samples 106
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 94.50 %
% of genes from short scaffolds (< 2000 bps) 90.83 %
Associated GOLD sequencing projects 103
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.743 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(11.927 % of family members)
Environment Ontology (ENVO) Unclassified
(33.028 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(33.945 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76
1OU_00804670
22ZMR_02067910
3JGI10216J12902_1060282532
4JGI24130J36418_100317801
5P42013CM_10526282
6P52013CM_11067531
7Ga0055453_101819431
8Ga0055436_102104292
9Ga0062590_1006217242
10Ga0066812_10260082
11Ga0069000_100860682
12Ga0070698_1021786671
13Ga0070697_1007831301
14Ga0070686_1009131992
15Ga0068861_1014744362
16Ga0066903_1080177911
17Ga0068863_1018059582
18Ga0066795_101066682
19Ga0066651_107401892
20Ga0075017_1006503872
21Ga0079220_111468401
22Ga0075434_1010120881
23Ga0068865_1011801562
24Ga0079218_107817151
25Ga0102952_12318551
26Ga0105099_110608092
27Ga0105247_111603932
28Ga0117941_10107871
29Ga0115027_103839042
30Ga0105100_103944992
31Ga0105238_121309431
32Ga0126311_105418922
33Ga0134086_102532272
34Ga0134086_102553541
35Ga0134124_114997201
36Ga0134127_108692302
37Ga0134122_106056861
38Ga0105246_108652832
39Ga0120139_10846893
40Ga0137363_113213701
41Ga0137374_106129342
42Ga0137398_111667751
43Ga0157286_103329442
44Ga0157301_103278672
45Ga0157306_102690242
46Ga0157302_105603031
47Ga0137407_104996592
48Ga0164298_107334392
49Ga0157372_123133912
50Ga0075320_10186632
51Ga0163163_107983911
52Ga0157377_107548062
53Ga0157379_122188991
54Ga0173478_106081051
55Ga0132257_1023224892
56Ga0187775_103922822
57Ga0190269_118034902
58Ga0190270_130440142
59Ga0190274_121764091
60Ga0173479_107446301
61Ga0196963_101518841
62Ga0210382_100340003
63Ga0224501_106210241
64Ga0209431_102176051
65Ga0207932_10526492
66Ga0210120_10840041
67Ga0207647_100844881
68Ga0207699_107321101
69Ga0207684_108121772
70Ga0207662_103204291
71Ga0207687_104185622
72Ga0207706_112037831
73Ga0207709_110408152
74Ga0207712_113755452
75Ga0210136_10746912
76Ga0207668_105775671
77Ga0207658_118219152
78Ga0208915_10309541
79Ga0207641_119734691
80Ga0207648_108673842
81Ga0209880_10896181
82Ga0209177_103715872
83Ga0209798_100578323
84Ga0209068_108341382
85Ga0268265_123568382
86Ga0268264_103614982
87Ga0247828_104326992
88Ga0247819_106210182
89Ga0307295_101946832
90Ga0307280_100351401
91Ga0247826_107423441
92Ga0247826_116954822
93Ga0302211_100321281
94Ga0307372_103263052
95Ga0316578_107102432
96Ga0307406_111475792
97Ga0311367_105078251
98Ga0308175_1015668131
99Ga0308175_1032534801
100Ga0326597_119570801
101Ga0307409_1004984241
102Ga0307416_1011023112
103Ga0318506_104303212
104Ga0315268_100783881
105Ga0315270_109082282
106Ga0316622_1020982172
107Ga0364924_000335_3_176
108Ga0364940_0043679_2_142
109Ga0373917_0086677_3_140
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 19.18%    β-sheet: 0.00%    Coil/Unstructured: 80.82%
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51015202530354045LAGAGATGAAEERGSRVADALDVPLVDLRHAWETGLSRALGWEASSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
91.7%8.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Wetland
Groundwater Sediment
Sediment
Wetland Sediment
Natural And Restored Wetlands
Sediment
Watersheds
Lake Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Serpentine Soil
Grasslands Soil
Soil
Agricultural Soil
Arctic Peat Soil
Permafrost
Soil
Soil
Soil
Ore Pile And Mine Drainage Contaminated Soil
Soil
Natural And Restored Wetlands
Tropical Peatland
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Soil
Soil
Soil
Fen
Sediment
Arabidopsis Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Switchgrass, Maize And Mischanthus Litter
Sediment Slurry
3.7%11.9%3.7%5.5%3.7%4.6%3.7%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
OU_008046702124908016GGERLFVDLAGAGATGAAEERGSSVADAIDVGLVELIRAWEHGLPRALGWDEAGASVEGR
2ZMR_020679102170459016Switchgrass, Maize And Mischanthus LitterELAAGVVAGSVEDRGGRVADALEVPLRDLRHAWEHGLDRALGWDA
JGI10216J12902_10602825323300000956SoilTGAAEDRGSRVADALIVGLDELRHAWETGLSRALGWSAR*
JGI24130J36418_1003178013300002549Arctic Peat SoilELVGEGATGAAEGRGVGVADALEGTLSDLRHAWEHGLPRALGEEA*
P42013CM_105262823300003461Ore Pile And Mine Drainage Contaminated SoilAGSGATGAAEGRGSRVADAVDVPIADLRHAWEQGLARALGWEDA*
P52013CM_110675313300003465Ore Pile And Mine Drainage Contaminated SoilVIELTGAGATGAAEERGSRVADSIDVAVGDLERAWEHGLPRALGWDVPGQAGAAARAEGR
Ga0055453_1018194313300004006Natural And Restored WetlandsLAGEGATGAAEERGSRIADALEAPVDDLRHAWELGLPRALGWETTDVRGGGA*
Ga0055436_1021042923300004024Natural And Restored WetlandsVVELAGEGATGAAEERGSRVADALDVAVGELTHAWEQGLSRALGMEA*
Ga0062590_10062172423300004157SoilAAEERGGSIADALEVPVADLRHAWEHGLSRALGWDDPATDAEGVR*
Ga0066812_102600823300005105SoilAGLATGTVEDRGGGGRVADALEVPVRDLRHAWEHGLGRALGWDA*
Ga0069000_1008606823300005182Natural And Restored WetlandsSGATGAAEERGSRVADALEVRVSDLRHAWEHGLPRALGWEVHA*
Ga0070698_10217866713300005471Corn, Switchgrass And Miscanthus RhizosphereVDLVAASVTGAAEERGSRIADALDVRVADLRNAWTHGLERALGWDEPGMEVT*
Ga0070697_10078313013300005536Corn, Switchgrass And Miscanthus RhizosphereAGAGATGAAEERGSGVADAIDVALVDLTRAWEHGLPRALGWDDLVSAVEGR*
Ga0070686_10091319923300005544Switchgrass RhizosphereIELAGDGATGAAEERGSRVADALEVRVDDLRHAWEHGLPRALGLEEVGA*
Ga0068861_10147443623300005719Switchgrass RhizosphereLAGSGPTGAAEERGSRIADALEVPLADLRHAWEHGLARALGWEG*
Ga0066903_10801779113300005764Tropical Forest SoilLEDESGDAPPPRLVVELHGAGATGSAEDRGSRVADALVVGLDELRHAWGGGLSRALGWEIR*
Ga0068863_10180595823300005841Switchgrass RhizosphereRLVVELTGSGASGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR*
Ga0066795_1010666823300005938SoilLVELVGEGATGAAEGRGVGVADALEVTLSDLRHAWEHGLPRALGEEA*
Ga0066651_1074018923300006031SoilDRGSRVADELIVGLDELRHAWDGGLARALGWEQR*
Ga0075017_10065038723300006059WatershedsRLVIELGGRGVIGDAEERGPQGADALDVAVADLRHAWDHGLTRALGED*
Ga0079220_1114684013300006806Agricultural SoilEERGSRVADALDVAVRDLRHAWETGLNRSLGWENA*
Ga0075434_10101208813300006871Populus RhizosphereGAGATGAAEERGSSVADAIDVHLTDLTRAWERGLPRALGWDQASASLEGR*
Ga0068865_10118015623300006881Miscanthus RhizosphereGAGATGAAEERGSSVADAIDVALVDLVRAWEHGLPRALGWDVTSASVEGR*
Ga0079218_1078171513300007004Agricultural SoilATGSAEDRGGSVADALEVPLRDLGHAWDHGLARALGWEG*
Ga0102952_123185513300007769SoilTGAAEERGSRIADALEVPVADLRHAWEHGLPRALGLEDDA*
Ga0105099_1106080923300009082Freshwater SedimentLAGAGATGAAEGRGSRVADALDVALDDLRHAWERGLLRALGREDG*
Ga0105247_1116039323300009101Switchgrass RhizosphereFGATGAAEDRGSRVADALIVGLDELRHAWEGGLSRALGWEQR*
Ga0117941_101078713300009120Lake SedimentGEGATGAAEGRGARVADEVDVALADLRHAWEHGLPRALGVDG*
Ga0115027_1038390423300009131WetlandEGATGAAEERGARVADAIELGLVDLRHAWEHGLPRALGVEG*
Ga0105100_1039449923300009166Freshwater SedimentATGAAEERGAGVADSIELDLADIRHAWDHGLPRALGVEGPA*
Ga0105238_1213094313300009551Corn RhizosphereQRLVVELTGSGATGAAEERGSGVADAIDVPLANLRHAWEHGLARALGWENG*
Ga0126311_1054189223300010045Serpentine SoilVVELAGAGATGAAEERGSNVADSIDVSVRALERAWEHGLPRALGWDEPGQASAAASAEGR
Ga0134086_1025322723300010323Grasslands SoilDRGSRVADALIVGLDELRHAWDGGLERALGWERR*
Ga0134086_1025535413300010323Grasslands SoilRLLVELAGAGATGAAEERGSGVADAIDVALADLARAWEHGLPRALGWDTVG*
Ga0134124_1149972013300010397Terrestrial SoilIELTGAGATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR*
Ga0134127_1086923023300010399Terrestrial SoilVELAGAGATGAAEERGSGVADAIDVAITALERAWEHGLPRALGWDEHGAGAAEGR*
Ga0134122_1060568613300010400Terrestrial SoilAEDRGSRIADALDVGLKELRHAWEGGLARALGWEAG*
Ga0105246_1086528323300011119Miscanthus RhizosphereIELHGSGATGSAEDRGSRVADELIVGLDELRHAWEGGLSRALGWEG*
Ga0120139_108468933300012019PermafrostLAGAGATGAAEERGSRVADALDVPLVDLRHAWETGLSRALGWEAS*
Ga0137363_1132137013300012202Vadose Zone SoilTLLIELHGSGATGSAEDRGSRVADELVVSLDELRHAWEGGLSRALGWEQR*
Ga0137374_1061293423300012204Vadose Zone SoilSRLVMELAGAGATGAADERGSRVADALDVPVADLRHAWEHGLSRALGWEER*
Ga0137398_1116677513300012683Vadose Zone SoilIELAGAGATGAAEERGSRVADALEVPLADLRHAWETGLSRALGWEAS*
Ga0157286_1033294423300012908SoilAAEERGSDVADELDVAIDDLCHAWEQGLARSLGWEAS*
Ga0157301_1032786723300012911SoilGAAEERGSDVADELDVAIDDLCHAWEQGLARSLGWEAS*
Ga0157306_1026902423300012912SoilVELVGEGATGAAEERGADIADPIEVELSSLHHAWAGGLPALFEGV*
Ga0157302_1056030313300012915SoilAIELTGAGATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR*
Ga0137407_1049965923300012930Vadose Zone SoilLHGSGATGSAEDRGSRVADELTVSLDELRHAWEGGLSRALGWEQR*
Ga0164298_1073343923300012955SoilVVELRGAGATGAAEERGSRVADAIEVPLRDLRHAWEHGLGRALGWEG*
Ga0157372_1231339123300013307Corn RhizosphereGNVEDRGGGVADALEVPLRDLRHAWDHGLARGLGWEG*
Ga0075320_101866323300014255Natural And Restored WetlandsDRLVVELAGFGATGAAEERGSRIADALEVPLTDLRHAWEHGLSRALGWEG*
Ga0163163_1079839113300014325Switchgrass RhizosphereEERGSRVADALDVAVKDLRHAWETGLNRAIGWENA*
Ga0157377_1075480623300014745Miscanthus RhizosphereLTGAGATGAAEERGSDVADELDVAINNLRHAWEQGLARSLGWEAS*
Ga0157379_1221889913300014968Switchgrass RhizosphereNAEDRGGGVADALEVPLRDLRHAWDHGLARGLGWEG*
Ga0173478_1060810513300015201SoilATGAAEERGAGIADELDEPLTVLRDAWDRGLPRAMGERG*
Ga0132257_10232248923300015373Arabidopsis RhizosphereEERGSRVADAVDVPVASLRHAWEHGLPRALGWDDIDAMEDLR*
Ga0187775_1039228223300017939Tropical PeatlandLAGQGATGAAEERGSRVADALDVPLDELRHAWEQGLARALGEDGSTGSLPEDR
Ga0190269_1180349023300018465SoilLVIELAGAGATGAAEERGSRVADALDVTLHELRHAWETGLPRALGWEMS
Ga0190270_1304401423300018469SoilEERGSRVADALEVPVVDLRHTWEHGLARALGWEGGA
Ga0190274_1217640913300018476SoilAGEGATGAAEERGSRIADAIDVAVADLRHAWEHGLSRSLGWEVPA
Ga0173479_1074463013300019362SoilGRGATGAAEERGSGIADALEVPVADLRHAWEHGLSRALGWDDAGAEGIR
Ga0196963_1015188413300020215SoilATGAAEERGARVADAVDVPLSELRNAWEHGLARALGWEER
Ga0210382_1003400033300021080Groundwater SedimentATGAAEERGSRVADALDVPLSELRHAWETGLSRALGWEGR
Ga0224501_1062102413300022223SedimentAGSGATGAAEERGSRVADALEVRVSDLRHAWEHGLPRALGWEVHA
Ga0209431_1021760513300025313SoilVIELAGAGATGAAEERGSRVADPIDLTIADLAHTWEHGLARALDWEAPAAAPEGR
Ga0207932_105264923300025495Arctic Peat SoilGGPGLLVELVGEGATGAAEGRGVGVADALEVTLSDLRHAWEHGLPRALGEEA
Ga0210120_108400413300025556Natural And Restored WetlandsVIELAGEGATGAAEERGSRIADALEAPVDDLRHAWELGLPRALGWETTDVRGGGA
Ga0207647_1008448813300025904Corn RhizosphereVIALHGSGATGSAEDRGSRVADELIVGLDELRHAWEGGLSRALGWDQR
Ga0207699_1073211013300025906Corn, Switchgrass And Miscanthus RhizosphereEDRGSRVADALIVTLDNLRHAWDGGLARALGWEIR
Ga0207684_1081217723300025910Corn, Switchgrass And Miscanthus RhizosphereGATGAAEERGSSVADAIDVALTDLTRAWEHGLPRALGWDEAG
Ga0207662_1032042913300025918Switchgrass RhizosphereLAGAGATGAAEERGSSVADAIDVALVDLVRAWEHGLPRALGWDVASASVEGR
Ga0207687_1041856223300025927Miscanthus RhizosphereDLAGAGATGAAEERGSSVADAIDVGLVELTRAWEHGLPRALGWDEASASQEGR
Ga0207706_1120378313300025933Corn RhizosphereGGERLFVDLAGAGATGAAEERGSSVADAIDVSLIDLTRAWEHGLPRALGWDPAAASVEGR
Ga0207709_1104081523300025935Miscanthus RhizosphereAIELTGAGATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR
Ga0207712_1137554523300025961Switchgrass RhizosphereGRLFVELAGAGATGAAEERGSGVADAIDVALHDLLRAWEHGLPRALGWDAPSASMEGR
Ga0210136_107469123300025967Natural And Restored WetlandsAAEERGARVADEVDIPLADIVHAWEHGLPRALGEEG
Ga0207668_1057756713300025972Switchgrass RhizosphereGAAEERGSDVADELDVAINNLRHAWEQGLARSLGWEAS
Ga0207658_1182191523300025986Switchgrass RhizosphereQRLVVELTGSGATGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR
Ga0208915_103095413300026048Natural And Restored WetlandsVVELTGQGATGAAEARGSRVADAIDVALADLRHAWEHGLARALGQDD
Ga0207641_1197346913300026088Switchgrass RhizosphereRRLVVELTGSGATGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR
Ga0207648_1086738423300026089Miscanthus RhizosphereGATGAAEDRGSRVADALIVGLDELRHAWEGGPSRALGWEVR
Ga0209880_108961813300026271SoilDQLVIELAGEGATGAAEERGSGIADALEVALTDLRHAWEQGLPRALGWEGGG
Ga0209177_1037158723300027775Agricultural SoilGAAGTVEDRGSRVADTLDVPVADLRHAWEHGLARALGWEGE
Ga0209798_1005783233300027843Wetland SedimentAAEERGAGVADAVDVALANLGHAWEHGLPRALGVEA
Ga0209068_1083413823300027894WatershedsIELGGRGVIGDAEERGPQGADALDVAVADLRHAWDHGLARALGED
Ga0268265_1235683823300028380Switchgrass RhizosphereELTGSGATGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR
Ga0268264_1036149823300028381Switchgrass RhizosphereTGAAEELGSDVADELDVAINNLRHAWEQGLARSLGWEAS
Ga0247828_1043269923300028587SoilATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR
Ga0247819_1062101823300028608SoilGASATGAAEERGSRVADEIDVALADLERAWEHGLPRALGWDA
Ga0307295_1019468323300028708SoilAGAGATGAAEERGSRVADSIDVARADLERAWQHGLPRALGWLELEQEGAR
Ga0307280_1003514013300028768SoilTGSAEDRGSRVADELSVSLDELRHAWEGGLSRALGWEQR
Ga0247826_1074234413300030336SoilGDRLAIELAGAGATGAAEERGSRVADAVDVPVASLRHAWEHGLPRALGWDDKDAVEGLR
Ga0247826_1169548223300030336SoilGRGATGAAEERVSGIADALEVPVADMRHAWEHGLSRALGWDDAGAEGIR
Ga0302211_1003212813300030491FenAAEERGSRIADALEVTVADLQHAWEQGLPRALGWETGA
Ga0307372_1032630523300031671SoilLAGEGATGAAEARGSRIADAVDVAVADLRHAWEHGLPRALGLDA
Ga0316578_1071024323300031728RhizosphereGEGATGAAEERGSRIADAIDVSVDDLRHAWEHGLPRALGWEPAD
Ga0307406_1114757923300031901RhizosphereAEERGSRVADALEVPLADLRHAWEHGLPRALGWEG
Ga0311367_1050782513300031918FenVGRGATGAAEERGTGLADEIDIAVTDLAHAREHGLPRALGEDG
Ga0308175_10156681313300031938SoilGDRLVVELAGAGATGAAEERGSNVADSIDVGITDLERAWEAGLPRALGWDQDGAGATEGG
Ga0308175_10325348013300031938SoilRLFVELAGAGATGAAEERGSGVADAIDVALADLTRAWERGLPRALGWDEQSAGVEGR
Ga0326597_1195708013300031965SoilVIDLAGAGATGAAEERGSRVADSLDLAVNELDRIWRTGLSRALGWDEAG
Ga0307409_10049842413300031995RhizosphereGAAEDRGSRVADALIVDLDELRHAWEGGLARALGWEAG
Ga0307416_10110231123300032002RhizosphereAAEARGSRVADAVDVAVADLRHAWETGLARSLGWEDA
Ga0318506_1043032123300032052SoilAAEERGARVADTLNVPLADLRHAWEHGLARALGWEGA
Ga0315268_1007838813300032173SedimentDLIGEGATGAAEERGARVADAVDLALVDLRHAWEQGLPRALGVEA
Ga0315270_1090822823300032275SedimentLVVELGGEGATGAAEERGSRVADALEVPVADLRHAWEHGLPRALGWESGA
Ga0316622_10209821723300033416SoilERGSRVADALDVSLGDLRHAWDHGLARALGLEGAR
Ga0364924_000335_3_1763300033811SedimentVDEIGTVGGDRLVIELARSGTGEERGSSGADAVDVALADVRHAWEHGLSRSLGWEVA
Ga0364940_0043679_2_1423300034164SedimentLTGAGATGAAEERGSRVADALDVPLDDLRRAWEHGLGRALGWDEAT
Ga0373917_0086677_3_1403300034692Sediment SlurryELSGHGATGAAEARGSRVADALDVALVDLRHAWEHGLARALGEVA


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