Basic Information | |
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Family ID | F088485 |
Family Type | Metagenome |
Number of Sequences | 109 |
Average Sequence Length | 46 residues |
Representative Sequence | LAGAGATGAAEERGSRVADALDVPLVDLRHAWETGLSRALGWEAS |
Number of Associated Samples | 106 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 94.50 % |
% of genes from short scaffolds (< 2000 bps) | 90.83 % |
Associated GOLD sequencing projects | 103 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.44 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (91.743 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (11.927 % of family members) |
Environment Ontology (ENVO) | Unclassified (33.028 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (33.945 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 19.18% β-sheet: 0.00% Coil/Unstructured: 80.82% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.44 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Groundwater Sediment Sediment Wetland Sediment Natural And Restored Wetlands Sediment Watersheds Lake Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Serpentine Soil Grasslands Soil Soil Agricultural Soil Arctic Peat Soil Permafrost Soil Soil Soil Ore Pile And Mine Drainage Contaminated Soil Soil Natural And Restored Wetlands Tropical Peatland Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Switchgrass Rhizosphere Soil Soil Soil Fen Sediment Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Switchgrass, Maize And Mischanthus Litter Sediment Slurry |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
OU_00804670 | 2124908016 | GGERLFVDLAGAGATGAAEERGSSVADAIDVGLVELIRAWEHGLPRALGWDEAGASVEGR | |
2ZMR_02067910 | 2170459016 | Switchgrass, Maize And Mischanthus Litter | ELAAGVVAGSVEDRGGRVADALEVPLRDLRHAWEHGLDRALGWDA |
JGI10216J12902_1060282532 | 3300000956 | Soil | TGAAEDRGSRVADALIVGLDELRHAWETGLSRALGWSAR* |
JGI24130J36418_100317801 | 3300002549 | Arctic Peat Soil | ELVGEGATGAAEGRGVGVADALEGTLSDLRHAWEHGLPRALGEEA* |
P42013CM_10526282 | 3300003461 | Ore Pile And Mine Drainage Contaminated Soil | AGSGATGAAEGRGSRVADAVDVPIADLRHAWEQGLARALGWEDA* |
P52013CM_11067531 | 3300003465 | Ore Pile And Mine Drainage Contaminated Soil | VIELTGAGATGAAEERGSRVADSIDVAVGDLERAWEHGLPRALGWDVPGQAGAAARAEGR |
Ga0055453_101819431 | 3300004006 | Natural And Restored Wetlands | LAGEGATGAAEERGSRIADALEAPVDDLRHAWELGLPRALGWETTDVRGGGA* |
Ga0055436_102104292 | 3300004024 | Natural And Restored Wetlands | VVELAGEGATGAAEERGSRVADALDVAVGELTHAWEQGLSRALGMEA* |
Ga0062590_1006217242 | 3300004157 | Soil | AAEERGGSIADALEVPVADLRHAWEHGLSRALGWDDPATDAEGVR* |
Ga0066812_10260082 | 3300005105 | Soil | AGLATGTVEDRGGGGRVADALEVPVRDLRHAWEHGLGRALGWDA* |
Ga0069000_100860682 | 3300005182 | Natural And Restored Wetlands | SGATGAAEERGSRVADALEVRVSDLRHAWEHGLPRALGWEVHA* |
Ga0070698_1021786671 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | VDLVAASVTGAAEERGSRIADALDVRVADLRNAWTHGLERALGWDEPGMEVT* |
Ga0070697_1007831301 | 3300005536 | Corn, Switchgrass And Miscanthus Rhizosphere | AGAGATGAAEERGSGVADAIDVALVDLTRAWEHGLPRALGWDDLVSAVEGR* |
Ga0070686_1009131992 | 3300005544 | Switchgrass Rhizosphere | IELAGDGATGAAEERGSRVADALEVRVDDLRHAWEHGLPRALGLEEVGA* |
Ga0068861_1014744362 | 3300005719 | Switchgrass Rhizosphere | LAGSGPTGAAEERGSRIADALEVPLADLRHAWEHGLARALGWEG* |
Ga0066903_1080177911 | 3300005764 | Tropical Forest Soil | LEDESGDAPPPRLVVELHGAGATGSAEDRGSRVADALVVGLDELRHAWGGGLSRALGWEIR* |
Ga0068863_1018059582 | 3300005841 | Switchgrass Rhizosphere | RLVVELTGSGASGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR* |
Ga0066795_101066682 | 3300005938 | Soil | LVELVGEGATGAAEGRGVGVADALEVTLSDLRHAWEHGLPRALGEEA* |
Ga0066651_107401892 | 3300006031 | Soil | DRGSRVADELIVGLDELRHAWDGGLARALGWEQR* |
Ga0075017_1006503872 | 3300006059 | Watersheds | RLVIELGGRGVIGDAEERGPQGADALDVAVADLRHAWDHGLTRALGED* |
Ga0079220_111468401 | 3300006806 | Agricultural Soil | EERGSRVADALDVAVRDLRHAWETGLNRSLGWENA* |
Ga0075434_1010120881 | 3300006871 | Populus Rhizosphere | GAGATGAAEERGSSVADAIDVHLTDLTRAWERGLPRALGWDQASASLEGR* |
Ga0068865_1011801562 | 3300006881 | Miscanthus Rhizosphere | GAGATGAAEERGSSVADAIDVALVDLVRAWEHGLPRALGWDVTSASVEGR* |
Ga0079218_107817151 | 3300007004 | Agricultural Soil | ATGSAEDRGGSVADALEVPLRDLGHAWDHGLARALGWEG* |
Ga0102952_12318551 | 3300007769 | Soil | TGAAEERGSRIADALEVPVADLRHAWEHGLPRALGLEDDA* |
Ga0105099_110608092 | 3300009082 | Freshwater Sediment | LAGAGATGAAEGRGSRVADALDVALDDLRHAWERGLLRALGREDG* |
Ga0105247_111603932 | 3300009101 | Switchgrass Rhizosphere | FGATGAAEDRGSRVADALIVGLDELRHAWEGGLSRALGWEQR* |
Ga0117941_10107871 | 3300009120 | Lake Sediment | GEGATGAAEGRGARVADEVDVALADLRHAWEHGLPRALGVDG* |
Ga0115027_103839042 | 3300009131 | Wetland | EGATGAAEERGARVADAIELGLVDLRHAWEHGLPRALGVEG* |
Ga0105100_103944992 | 3300009166 | Freshwater Sediment | ATGAAEERGAGVADSIELDLADIRHAWDHGLPRALGVEGPA* |
Ga0105238_121309431 | 3300009551 | Corn Rhizosphere | QRLVVELTGSGATGAAEERGSGVADAIDVPLANLRHAWEHGLARALGWENG* |
Ga0126311_105418922 | 3300010045 | Serpentine Soil | VVELAGAGATGAAEERGSNVADSIDVSVRALERAWEHGLPRALGWDEPGQASAAASAEGR |
Ga0134086_102532272 | 3300010323 | Grasslands Soil | DRGSRVADALIVGLDELRHAWDGGLERALGWERR* |
Ga0134086_102553541 | 3300010323 | Grasslands Soil | RLLVELAGAGATGAAEERGSGVADAIDVALADLARAWEHGLPRALGWDTVG* |
Ga0134124_114997201 | 3300010397 | Terrestrial Soil | IELTGAGATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR* |
Ga0134127_108692302 | 3300010399 | Terrestrial Soil | VELAGAGATGAAEERGSGVADAIDVAITALERAWEHGLPRALGWDEHGAGAAEGR* |
Ga0134122_106056861 | 3300010400 | Terrestrial Soil | AEDRGSRIADALDVGLKELRHAWEGGLARALGWEAG* |
Ga0105246_108652832 | 3300011119 | Miscanthus Rhizosphere | IELHGSGATGSAEDRGSRVADELIVGLDELRHAWEGGLSRALGWEG* |
Ga0120139_10846893 | 3300012019 | Permafrost | LAGAGATGAAEERGSRVADALDVPLVDLRHAWETGLSRALGWEAS* |
Ga0137363_113213701 | 3300012202 | Vadose Zone Soil | TLLIELHGSGATGSAEDRGSRVADELVVSLDELRHAWEGGLSRALGWEQR* |
Ga0137374_106129342 | 3300012204 | Vadose Zone Soil | SRLVMELAGAGATGAADERGSRVADALDVPVADLRHAWEHGLSRALGWEER* |
Ga0137398_111667751 | 3300012683 | Vadose Zone Soil | IELAGAGATGAAEERGSRVADALEVPLADLRHAWETGLSRALGWEAS* |
Ga0157286_103329442 | 3300012908 | Soil | AAEERGSDVADELDVAIDDLCHAWEQGLARSLGWEAS* |
Ga0157301_103278672 | 3300012911 | Soil | GAAEERGSDVADELDVAIDDLCHAWEQGLARSLGWEAS* |
Ga0157306_102690242 | 3300012912 | Soil | VELVGEGATGAAEERGADIADPIEVELSSLHHAWAGGLPALFEGV* |
Ga0157302_105603031 | 3300012915 | Soil | AIELTGAGATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR* |
Ga0137407_104996592 | 3300012930 | Vadose Zone Soil | LHGSGATGSAEDRGSRVADELTVSLDELRHAWEGGLSRALGWEQR* |
Ga0164298_107334392 | 3300012955 | Soil | VVELRGAGATGAAEERGSRVADAIEVPLRDLRHAWEHGLGRALGWEG* |
Ga0157372_123133912 | 3300013307 | Corn Rhizosphere | GNVEDRGGGVADALEVPLRDLRHAWDHGLARGLGWEG* |
Ga0075320_10186632 | 3300014255 | Natural And Restored Wetlands | DRLVVELAGFGATGAAEERGSRIADALEVPLTDLRHAWEHGLSRALGWEG* |
Ga0163163_107983911 | 3300014325 | Switchgrass Rhizosphere | EERGSRVADALDVAVKDLRHAWETGLNRAIGWENA* |
Ga0157377_107548062 | 3300014745 | Miscanthus Rhizosphere | LTGAGATGAAEERGSDVADELDVAINNLRHAWEQGLARSLGWEAS* |
Ga0157379_122188991 | 3300014968 | Switchgrass Rhizosphere | NAEDRGGGVADALEVPLRDLRHAWDHGLARGLGWEG* |
Ga0173478_106081051 | 3300015201 | Soil | ATGAAEERGAGIADELDEPLTVLRDAWDRGLPRAMGERG* |
Ga0132257_1023224892 | 3300015373 | Arabidopsis Rhizosphere | EERGSRVADAVDVPVASLRHAWEHGLPRALGWDDIDAMEDLR* |
Ga0187775_103922822 | 3300017939 | Tropical Peatland | LAGQGATGAAEERGSRVADALDVPLDELRHAWEQGLARALGEDGSTGSLPEDR |
Ga0190269_118034902 | 3300018465 | Soil | LVIELAGAGATGAAEERGSRVADALDVTLHELRHAWETGLPRALGWEMS |
Ga0190270_130440142 | 3300018469 | Soil | EERGSRVADALEVPVVDLRHTWEHGLARALGWEGGA |
Ga0190274_121764091 | 3300018476 | Soil | AGEGATGAAEERGSRIADAIDVAVADLRHAWEHGLSRSLGWEVPA |
Ga0173479_107446301 | 3300019362 | Soil | GRGATGAAEERGSGIADALEVPVADLRHAWEHGLSRALGWDDAGAEGIR |
Ga0196963_101518841 | 3300020215 | Soil | ATGAAEERGARVADAVDVPLSELRNAWEHGLARALGWEER |
Ga0210382_100340003 | 3300021080 | Groundwater Sediment | ATGAAEERGSRVADALDVPLSELRHAWETGLSRALGWEGR |
Ga0224501_106210241 | 3300022223 | Sediment | AGSGATGAAEERGSRVADALEVRVSDLRHAWEHGLPRALGWEVHA |
Ga0209431_102176051 | 3300025313 | Soil | VIELAGAGATGAAEERGSRVADPIDLTIADLAHTWEHGLARALDWEAPAAAPEGR |
Ga0207932_10526492 | 3300025495 | Arctic Peat Soil | GGPGLLVELVGEGATGAAEGRGVGVADALEVTLSDLRHAWEHGLPRALGEEA |
Ga0210120_10840041 | 3300025556 | Natural And Restored Wetlands | VIELAGEGATGAAEERGSRIADALEAPVDDLRHAWELGLPRALGWETTDVRGGGA |
Ga0207647_100844881 | 3300025904 | Corn Rhizosphere | VIALHGSGATGSAEDRGSRVADELIVGLDELRHAWEGGLSRALGWDQR |
Ga0207699_107321101 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | EDRGSRVADALIVTLDNLRHAWDGGLARALGWEIR |
Ga0207684_108121772 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | GATGAAEERGSSVADAIDVALTDLTRAWEHGLPRALGWDEAG |
Ga0207662_103204291 | 3300025918 | Switchgrass Rhizosphere | LAGAGATGAAEERGSSVADAIDVALVDLVRAWEHGLPRALGWDVASASVEGR |
Ga0207687_104185622 | 3300025927 | Miscanthus Rhizosphere | DLAGAGATGAAEERGSSVADAIDVGLVELTRAWEHGLPRALGWDEASASQEGR |
Ga0207706_112037831 | 3300025933 | Corn Rhizosphere | GGERLFVDLAGAGATGAAEERGSSVADAIDVSLIDLTRAWEHGLPRALGWDPAAASVEGR |
Ga0207709_110408152 | 3300025935 | Miscanthus Rhizosphere | AIELTGAGATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR |
Ga0207712_113755452 | 3300025961 | Switchgrass Rhizosphere | GRLFVELAGAGATGAAEERGSGVADAIDVALHDLLRAWEHGLPRALGWDAPSASMEGR |
Ga0210136_10746912 | 3300025967 | Natural And Restored Wetlands | AAEERGARVADEVDIPLADIVHAWEHGLPRALGEEG |
Ga0207668_105775671 | 3300025972 | Switchgrass Rhizosphere | GAAEERGSDVADELDVAINNLRHAWEQGLARSLGWEAS |
Ga0207658_118219152 | 3300025986 | Switchgrass Rhizosphere | QRLVVELTGSGATGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR |
Ga0208915_10309541 | 3300026048 | Natural And Restored Wetlands | VVELTGQGATGAAEARGSRVADAIDVALADLRHAWEHGLARALGQDD |
Ga0207641_119734691 | 3300026088 | Switchgrass Rhizosphere | RRLVVELTGSGATGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR |
Ga0207648_108673842 | 3300026089 | Miscanthus Rhizosphere | GATGAAEDRGSRVADALIVGLDELRHAWEGGPSRALGWEVR |
Ga0209880_10896181 | 3300026271 | Soil | DQLVIELAGEGATGAAEERGSGIADALEVALTDLRHAWEQGLPRALGWEGGG |
Ga0209177_103715872 | 3300027775 | Agricultural Soil | GAAGTVEDRGSRVADTLDVPVADLRHAWEHGLARALGWEGE |
Ga0209798_100578323 | 3300027843 | Wetland Sediment | AAEERGAGVADAVDVALANLGHAWEHGLPRALGVEA |
Ga0209068_108341382 | 3300027894 | Watersheds | IELGGRGVIGDAEERGPQGADALDVAVADLRHAWDHGLARALGED |
Ga0268265_123568382 | 3300028380 | Switchgrass Rhizosphere | ELTGSGATGAAEERGSGVADAIDVPLTNLRHAWEHGLARALGWESPAFASEGR |
Ga0268264_103614982 | 3300028381 | Switchgrass Rhizosphere | TGAAEELGSDVADELDVAINNLRHAWEQGLARSLGWEAS |
Ga0247828_104326992 | 3300028587 | Soil | ATGAAEERGSRVADAVDVPVADLRHAWEHGLPRALGWDGIDGMEDLR |
Ga0247819_106210182 | 3300028608 | Soil | GASATGAAEERGSRVADEIDVALADLERAWEHGLPRALGWDA |
Ga0307295_101946832 | 3300028708 | Soil | AGAGATGAAEERGSRVADSIDVARADLERAWQHGLPRALGWLELEQEGAR |
Ga0307280_100351401 | 3300028768 | Soil | TGSAEDRGSRVADELSVSLDELRHAWEGGLSRALGWEQR |
Ga0247826_107423441 | 3300030336 | Soil | GDRLAIELAGAGATGAAEERGSRVADAVDVPVASLRHAWEHGLPRALGWDDKDAVEGLR |
Ga0247826_116954822 | 3300030336 | Soil | GRGATGAAEERVSGIADALEVPVADMRHAWEHGLSRALGWDDAGAEGIR |
Ga0302211_100321281 | 3300030491 | Fen | AAEERGSRIADALEVTVADLQHAWEQGLPRALGWETGA |
Ga0307372_103263052 | 3300031671 | Soil | LAGEGATGAAEARGSRIADAVDVAVADLRHAWEHGLPRALGLDA |
Ga0316578_107102432 | 3300031728 | Rhizosphere | GEGATGAAEERGSRIADAIDVSVDDLRHAWEHGLPRALGWEPAD |
Ga0307406_111475792 | 3300031901 | Rhizosphere | AEERGSRVADALEVPLADLRHAWEHGLPRALGWEG |
Ga0311367_105078251 | 3300031918 | Fen | VGRGATGAAEERGTGLADEIDIAVTDLAHAREHGLPRALGEDG |
Ga0308175_1015668131 | 3300031938 | Soil | GDRLVVELAGAGATGAAEERGSNVADSIDVGITDLERAWEAGLPRALGWDQDGAGATEGG |
Ga0308175_1032534801 | 3300031938 | Soil | RLFVELAGAGATGAAEERGSGVADAIDVALADLTRAWERGLPRALGWDEQSAGVEGR |
Ga0326597_119570801 | 3300031965 | Soil | VIDLAGAGATGAAEERGSRVADSLDLAVNELDRIWRTGLSRALGWDEAG |
Ga0307409_1004984241 | 3300031995 | Rhizosphere | GAAEDRGSRVADALIVDLDELRHAWEGGLARALGWEAG |
Ga0307416_1011023112 | 3300032002 | Rhizosphere | AAEARGSRVADAVDVAVADLRHAWETGLARSLGWEDA |
Ga0318506_104303212 | 3300032052 | Soil | AAEERGARVADTLNVPLADLRHAWEHGLARALGWEGA |
Ga0315268_100783881 | 3300032173 | Sediment | DLIGEGATGAAEERGARVADAVDLALVDLRHAWEQGLPRALGVEA |
Ga0315270_109082282 | 3300032275 | Sediment | LVVELGGEGATGAAEERGSRVADALEVPVADLRHAWEHGLPRALGWESGA |
Ga0316622_1020982172 | 3300033416 | Soil | ERGSRVADALDVSLGDLRHAWDHGLARALGLEGAR |
Ga0364924_000335_3_176 | 3300033811 | Sediment | VDEIGTVGGDRLVIELARSGTGEERGSSGADAVDVALADVRHAWEHGLSRSLGWEVA |
Ga0364940_0043679_2_142 | 3300034164 | Sediment | LTGAGATGAAEERGSRVADALDVPLDDLRRAWEHGLGRALGWDEAT |
Ga0373917_0086677_3_140 | 3300034692 | Sediment Slurry | ELSGHGATGAAEARGSRVADALDVALVDLRHAWEHGLARALGEVA |
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