Metagenome / Metatranscriptome Family F088483

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088483
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	46 residues
Representative Sequence	MNAAAIIIIAIAATGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPG
Number of Associated Samples	101
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.63 %
% of genes near scaffold ends (potentially truncated)	82.57 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.183 % of family members)
Environment Ontology (ENVO)	Unclassified (25.688 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.046 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.00% β-sheet: 0.00% Coil/Unstructured: 48.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01042	Ribonuc_L-PSP	19.27
PF04237	YjbR	6.42
PF13520	AA_permease_2	5.50
PF02633	Creatininase	1.83
PF00561	Abhydrolase_1	0.92
PF13365	Trypsin_2	0.92
PF12867	DinB_2	0.92
PF07883	Cupin_2	0.92
PF09865	DUF2092	0.92
PF07676	PD40	0.92
PF13304	AAA_21	0.92
PF13414	TPR_11	0.92
PF02683	DsbD	0.92
PF08327	AHSA1	0.92
PF00903	Glyoxalase	0.92
PF09278	MerR-DNA-bind	0.92
PF08281	Sigma70_r4_2	0.92
PF11746	DUF3303	0.92
PF01925	TauE	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	19.27
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	6.42
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	1.83
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.92
COG0789	DNA-binding transcriptional regulator, MerR family	Transcription [K]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	44.95 %
Unclassified	root	N/A	4.59 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.35 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.93 %
Unclassified	root	N/A	4.59 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.43 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.09 %
Unclassified	root	N/A	4.59 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.43 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.09 %
Unclassified	root	N/A	4.59 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	0.92 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.92 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.43 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	5.50 %
Unclassified	root	N/A	4.59 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %
Acidicapsa	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa	0.92 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.92 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.92 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.43 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	5.50 %
Unclassified	root	N/A	4.59 %
Acidicapsa dinghuensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	0.92 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	0.92 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.92 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.92 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.92 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.92 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10101491	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300000955\|JGI1027J12803_108639821	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300003505\|JGIcombinedJ51221_10151942	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300005174\|Ga0066680_10775906	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005181\|Ga0066678_10669304	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005344\|Ga0070661_100226253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1436	Open in IMG/M
3300005436\|Ga0070713_101629155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	626	Open in IMG/M
3300005450\|Ga0066682_10422286	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300005458\|Ga0070681_10163519	All Organisms → cellular organisms → Bacteria	2149	Open in IMG/M
3300005468\|Ga0070707_101090611	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300005532\|Ga0070739_10192619	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300005555\|Ga0066692_10975342	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300005556\|Ga0066707_10283043	Not Available	1085	Open in IMG/M
3300005566\|Ga0066693_10151444	All Organisms → cellular organisms → Bacteria → Acidobacteria	872	Open in IMG/M
3300005568\|Ga0066703_10016348	All Organisms → cellular organisms → Bacteria	3733	Open in IMG/M
3300005602\|Ga0070762_10207665	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300005952\|Ga0080026_10030644	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300005995\|Ga0066790_10225038	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300006028\|Ga0070717_11090783	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300006806\|Ga0079220_11217448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	623	Open in IMG/M
3300006893\|Ga0073928_10197334	All Organisms → cellular organisms → Bacteria → Acidobacteria	1579	Open in IMG/M
3300006903\|Ga0075426_10639866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300007076\|Ga0075435_100736805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M
3300009545\|Ga0105237_12342137	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300009624\|Ga0116105_1139841	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	635	Open in IMG/M
3300010043\|Ga0126380_12290564	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300010047\|Ga0126382_11800904	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300010048\|Ga0126373_11478291	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300010048\|Ga0126373_12556331	Not Available	569	Open in IMG/M
3300010361\|Ga0126378_10767768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300010366\|Ga0126379_12658763	All Organisms → cellular organisms → Bacteria → Acidobacteria	598	Open in IMG/M
3300010376\|Ga0126381_101818641	All Organisms → cellular organisms → Bacteria → Acidobacteria	879	Open in IMG/M
3300010399\|Ga0134127_10829278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300011120\|Ga0150983_14026549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	789	Open in IMG/M
3300012285\|Ga0137370_10182356	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300012354\|Ga0137366_10179083	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1590	Open in IMG/M
3300012354\|Ga0137366_11187951	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	520	Open in IMG/M
3300012359\|Ga0137385_10494426	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300013105\|Ga0157369_12694021	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M
3300016341\|Ga0182035_11608421	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300016404\|Ga0182037_11086548	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300017823\|Ga0187818_10283757	Not Available	726	Open in IMG/M
3300017940\|Ga0187853_10406650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	602	Open in IMG/M
3300017943\|Ga0187819_10789727	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300017946\|Ga0187879_10629324	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300017955\|Ga0187817_10176925	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	1358	Open in IMG/M
3300017955\|Ga0187817_10937171	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300017970\|Ga0187783_11189603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300017972\|Ga0187781_10474232	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300017975\|Ga0187782_11319111	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	566	Open in IMG/M
3300017995\|Ga0187816_10394732	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300018024\|Ga0187881_10369507	Not Available	589	Open in IMG/M
3300018025\|Ga0187885_10076803	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis	1656	Open in IMG/M
3300018025\|Ga0187885_10192426	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	948	Open in IMG/M
3300018037\|Ga0187883_10282003	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	849	Open in IMG/M
3300018057\|Ga0187858_10425777	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	821	Open in IMG/M
3300018086\|Ga0187769_10618223	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300018431\|Ga0066655_11112096	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300018468\|Ga0066662_12418608	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300018482\|Ga0066669_11968802	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300020579\|Ga0210407_10978647	All Organisms → cellular organisms → Bacteria → Acidobacteria	646	Open in IMG/M
3300020581\|Ga0210399_10773537	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300020583\|Ga0210401_10029684	All Organisms → cellular organisms → Bacteria → Acidobacteria	5209	Open in IMG/M
3300020583\|Ga0210401_10271971	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	1554	Open in IMG/M
3300021088\|Ga0210404_10606797	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300021170\|Ga0210400_10016878	All Organisms → cellular organisms → Bacteria	5742	Open in IMG/M
3300021170\|Ga0210400_11438556	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300021171\|Ga0210405_10668783	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300021178\|Ga0210408_11320127	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300021181\|Ga0210388_10428524	All Organisms → cellular organisms → Bacteria → Acidobacteria	1163	Open in IMG/M
3300021403\|Ga0210397_10060742	All Organisms → cellular organisms → Bacteria	2451	Open in IMG/M
3300021405\|Ga0210387_10427273	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300021406\|Ga0210386_10901748	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300021407\|Ga0210383_10243542	All Organisms → cellular organisms → Bacteria → Acidobacteria	1542	Open in IMG/M
3300021420\|Ga0210394_10364463	All Organisms → cellular organisms → Bacteria → Acidobacteria	1270	Open in IMG/M
3300021433\|Ga0210391_10368490	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300021433\|Ga0210391_10499142	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300021474\|Ga0210390_10561673	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300021475\|Ga0210392_10135999	All Organisms → cellular organisms → Bacteria	1663	Open in IMG/M
3300025480\|Ga0208688_1057994	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300025920\|Ga0207649_10080983	All Organisms → cellular organisms → Bacteria	2102	Open in IMG/M
3300025921\|Ga0207652_10606439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300025923\|Ga0207681_11870531	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	500	Open in IMG/M
3300025927\|Ga0207687_10178324	All Organisms → cellular organisms → Bacteria	1644	Open in IMG/M
3300025928\|Ga0207700_10062942	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2819	Open in IMG/M
3300025981\|Ga0207640_10140530	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300026118\|Ga0207675_101561724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300026217\|Ga0209871_1064605	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300026312\|Ga0209153_1266788	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300027073\|Ga0208366_1005185	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	1287	Open in IMG/M
3300027172\|Ga0208098_1021391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300027889\|Ga0209380_10517661	Not Available	695	Open in IMG/M
3300028047\|Ga0209526_10522775	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300028759\|Ga0302224_10304458	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300029903\|Ga0247271_110339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1372	Open in IMG/M
3300029910\|Ga0311369_10653019	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300030042\|Ga0302300_1205482	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300030991\|Ga0073994_10025810	All Organisms → cellular organisms → Bacteria	2570	Open in IMG/M
3300031525\|Ga0302326_12159166	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300031720\|Ga0307469_10611697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	975	Open in IMG/M
3300031740\|Ga0307468_101475006	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	629	Open in IMG/M
3300031754\|Ga0307475_10826947	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300031941\|Ga0310912_10495234	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300032035\|Ga0310911_10897841	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300032180\|Ga0307471_101585600	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300032180\|Ga0307471_103815649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	533	Open in IMG/M
3300032205\|Ga0307472_101259750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300032895\|Ga0335074_10087441	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4149	Open in IMG/M
3300033829\|Ga0334854_003106	All Organisms → cellular organisms → Bacteria	4060	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	9.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.06%
Aquatic	Environmental → Aquatic	13.76%
Plants	Host-Associated → Plants	9.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.48%
Freshwater	Environmental → Aquatic → Freshwater	12.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.34%
Peat	Environmental → Terrestrial → Peat	4.59%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.84%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.34%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.01%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.42%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.42%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.59%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.18%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.92%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026217	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300027073	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF010 (SPAdes)	Environmental	Open in IMG/M
3300027172	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF038 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300029903	Soil microbial communities from Marcell Experimental Forest, Minnesota, USA - Fen703	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030042	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_101014913	3300000567	Peatlands Soil	MTAAAIIIIAIAALGVLMMRFRKRWLARINIAFTNRITSLFAGWLPGFGILTHL
JGI1027J12803_1086398212	3300000955	Soil	MSIGAIIVIAIAASGVLMMRFRKRWLAKINIIFTNRITSLFA
JGIcombinedJ51221_101519421	3300003505	Forest Soil	VNAAAIIIVAIAATGVLMVRFRKRWLAKINIAVTNRITSLFAGWLPGFGILTHV
Ga0066680_107759062	3300005174	Soil	VSVGAIIAIAISAAAILLMRFRKRWLAKFNIAVTNRITGLFAGWLPGFG
Ga0066678_106693041	3300005181	Soil	VSVGAIIAIAIPAAAILLMRFRKRWLAKFNIAVTNRITGLFAGWL
Ga0070661_1002262531	3300005344	Corn Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLA
Ga0070713_1016291552	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSIGAIIIIVIAASGVLMMRFRKRWLAKINIVLTNRITGLFAGWL*
Ga0066682_104222861	3300005450	Soil	VSVGAIIAIAIPAAALLPMRFRKRWLAKFNIAVTKRITGLFAGWLPGFGIL
Ga0070681_101635193	3300005458	Corn Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAGWIPGFGILTHVGRKS
Ga0070707_1010906112	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VSAGAIIIVAIATTGVLLMRFRKRWLARINIAVTNRITGLFAGWLPGFGILT
Ga0070739_101926193	3300005532	Surface Soil	VSILSILAIAIPVSGILMMRFRKRWLAKFNILVTN
Ga0066692_109753422	3300005555	Soil	VSVGAIIAIAIPATAILLMRFRKRWLAKFNIAVTN
Ga0066707_102830431	3300005556	Soil	MLLVLIVAIAVTGVLLMRFRKRWLARINIAVTNRITGLFAGWL
Ga0066693_101514441	3300005566	Soil	MRVGLILAIAIPATGVLMMRFRKRWLAKFNITVTTESRPC
Ga0066703_100163481	3300005568	Soil	MIAGAIIVIVIAASGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPGFGI
Ga0070762_102076653	3300005602	Soil	MNAAAIEIIAIAATGMLMMRFHMRWVAKINIAFTSLFTGWLPGFGILTTSDESRGKSTGLR*
Ga0080026_100306443	3300005952	Permafrost Soil	MSTGAILAIAVLATAILMMRFRKRWLATINIAVTNRITSLFAG*
Ga0066790_102250381	3300005995	Soil	MSAGAIIVIALAASGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPGFGILTHVGR
Ga0070717_110907833	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSTGAIIIIVIAASGVLMMRFRKRWLARINIAFTNRITSLFAGWLPAFGILSHVG
Ga0079220_112174481	3300006806	Agricultural Soil	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAGWIPGF
Ga0073928_101973341	3300006893	Iron-Sulfur Acid Spring	MNAAAIIIIAIAATGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPG
Ga0075426_106398662	3300006903	Populus Rhizosphere	MSAGAIITIAIAATGILLMRFRKRWLAKFNIVVTNRITGLFAGYVPG
Ga0075435_1007368052	3300007076	Populus Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAGW
Ga0105237_123421372	3300009545	Corn Rhizosphere	MPITIIILVVIPLSGMLMMRFRKKSLARFNLAVTNRITGLFAGWLPLFGIITHVG
Ga0116105_11398411	3300009624	Peatland	VNAAAIIIVAIAATGVLMMRFRKRWLAKMDIVLTNRITGLFEGWLPGFGI
Ga0126380_122905641	3300010043	Tropical Forest Soil	VSIGLILAAAIPAAAILMMRFRKRWLARFNIAVTNRITGLFAGWLPGFGILTH
Ga0126382_118009043	3300010047	Tropical Forest Soil	VSTGAIVIVAIAATGMLLMRFRKRWLAKINIAVTNRITSLFAGWLPGFGILTHV
Ga0126373_114782913	3300010048	Tropical Forest Soil	MSAAAILIVAIAVSRILMMRFRERWLAKINIAFTNRITNLFAG*
Ga0126373_125563312	3300010048	Tropical Forest Soil	MSAGAIIIIVIAAAGVLMMRLRKRWLAKINIILTNRITGLF
Ga0126378_107677682	3300010361	Tropical Forest Soil	VSTGAILVTVIAASGVLMMRFRKRWLAKINIAFTNRITSLFAGWLRE*
Ga0126379_126587632	3300010366	Tropical Forest Soil	MTAGAIIIIAIAASGVLMMRFRKRWLAKINSAFINRITSLFAGWLPGFGILTHVG
Ga0126381_1018186411	3300010376	Tropical Forest Soil	VSITALLVIVVATTGMLLMRFRKRWLAKINIAFTNRITSLFAGWLPG
Ga0134127_108292782	3300010399	Terrestrial Soil	MSIAIIILVVAIPLSGMLLMRFRKRWLAKINLAITNRITSRFAGWLPLFGIVTHV
Ga0150983_140265492	3300011120	Forest Soil	MSAVVILIIAIAASGVLLMRFRKRWLAKINIAFTNRITSLFAGWLPGFGILNHVG
Ga0137370_101823564	3300012285	Vadose Zone Soil	VSVGAIIAIAIPAAAILLMRFRKRWLAKFNIAVTNRITGLFAGWLTGFGISLTWAANL
Ga0137366_101790834	3300012354	Vadose Zone Soil	MSVVAILAIAIPATGTLMMRFRKRWLAKINIAFTNRITGLFAGWLPGFGILTHIGRKS
Ga0137366_111879511	3300012354	Vadose Zone Soil	MSTGLILAIAIPTTLILMMRFRKRWLAKFNIAVTNRFTGLFAG*
Ga0137385_104944263	3300012359	Vadose Zone Soil	MIAGAIIIIVIAASGVLMMRFRKRWLAKINIVLTNR
Ga0157369_126940211	3300013105	Corn Rhizosphere	MSAGAIITIAIAATGILLMRFRKRWLAKFNIVVTNRITGLFAGYVPGFG
Ga0182035_116084212	3300016341	Soil	MSAGAILVSAIAATEILLMRFRKRRLAKINIAFTNRITSLFAGWLPE
Ga0182037_110865482	3300016404	Soil	VSAGAILVIVIAASGVLMMRFRKRWLAKINIAFTNRITSLFAGWLPE
Ga0187818_102837572	3300017823	Freshwater Sediment	MYAAAIVIIVIAASGVLMMRFQKRWLAKINIVLTNRIT
Ga0187853_104066502	3300017940	Peatland	VNTAAIIIVAIAAMGVLMMRFRKRWLAKINLAFTNRI
Ga0187819_107897271	3300017943	Freshwater Sediment	VSAGVIIIIVIAASGILMMRFRKRWLAKINIVFTNRITGLFAGW
Ga0187879_106293241	3300017946	Peatland	VVIAIVIIAIAATGVLMMRFRKRWLAKINIAFTNRITSLFA
Ga0187817_101769251	3300017955	Freshwater Sediment	VNAAAIIIIVIAASGVLMMRFRKRWLAKINIALTNRITS
Ga0187817_109371711	3300017955	Freshwater Sediment	VSAVAVIAIIVAIAASGVLMMRFRKRWLARINIAFTNRIT
Ga0187783_111896032	3300017970	Tropical Peatland	MSAGAIIIIAIAASSVLMLRFQKRWLAKINIVLTNGITGVFAGWLLGFGILGTPH
Ga0187781_104742323	3300017972	Tropical Peatland	MSAGAIIIAAIATTGVLLMRFRKRWLAKINIVFTNRITSLFAGWLPGFGILTHVGR
Ga0187782_113191112	3300017975	Tropical Peatland	MIVAIAATGVLLMRFRKRWLAKKLAKINIVFTNRITRLFAGWLPGFG
Ga0187816_103947321	3300017995	Freshwater Sediment	MSTGAVLAIAILATGILMMRFRKRWLAKFNIAVTNRITSLF
Ga0187881_103695071	3300018024	Peatland	MNAAAIIIIAIAATGVLMMRFRKRWLAKINIILTNRITSLFAGW
Ga0187885_100768031	3300018025	Peatland	MKALAIIIIAIAVSGVLLMRFRKRWLAKINIVFTNR
Ga0187885_101924261	3300018025	Peatland	MSVGAILVIAIAVSGILLMRFRKRWLAKINIVFTNR
Ga0187883_102820032	3300018037	Peatland	VNTAAIIIVAIAAMGVLMMRFRKRWLAKINLAFTNR
Ga0187858_104257771	3300018057	Peatland	VNAAAIIIVAIAATGVLMMRFRKRWLAKMDIVLTNRITGLFEGW
Ga0187769_106182233	3300018086	Tropical Peatland	VNAAAIIIVAIAASGILMMRFRKRWLAKINIVFTNRITSLFAGWLPGFGIL
Ga0066655_111120962	3300018431	Grasslands Soil	VSTGLILAIAIATTGVLMMRFRKRWLAKFNIFITNRITALFAGWLPGFGIL
Ga0066662_124186082	3300018468	Grasslands Soil	MSAGAIIIVTIAATGVLMMRFRKRWLAKINIAFTH
Ga0066669_119688022	3300018482	Grasslands Soil	VSVGAIIAIAISAAAILLMRFRKRWLAKFNIAVTNRITGLFAGWL
Ga0210407_109786471	3300020579	Soil	MSAGAIIIIAISVTGILMMRFRKRWLAKFNIAVTNRITSLFAG
Ga0210399_107735373	3300020581	Soil	VNAAAIIIIALAATGVLLMRFRKRWLAKINIAFTNRITGLFAGWLPGS
Ga0210401_100296841	3300020583	Soil	MNAAAIVIIAIAATGVLMMRFRKRWLAKINIALTNRITGLFAGW
Ga0210401_102719711	3300020583	Soil	MSAGAIIIIAIAVTGILMMRFRKRGLAKFNIAVTNRITSLFAGWL
Ga0210404_106067971	3300021088	Soil	VNAAAIIIIALAATGVLLMRFRKRWLAKINIAFTNRIAGLFAGWLPGF
Ga0210400_100168789	3300021170	Soil	MSAGAIIIIAISVTGILMMRFRKRWLAKFNIAVTNRITTLFA
Ga0210400_114385561	3300021170	Soil	MSTGAILAIAILSTGILMMRFRKRWLANFNIAVTNRITSLFAGWLSGHWHS
Ga0210405_106687831	3300021171	Soil	MNAAAITIIAIAATGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPGF
Ga0210408_113201272	3300021178	Soil	VSVGAIIVIAIAATGILLMRFRKRWLAKINIAFTNRITSLFAGWLPG
Ga0210388_104285242	3300021181	Soil	MNAAAIEIIAIAATGMLMMRFHMRWLAKINIAFTSLFTGWLPGFGILTTSDESRGKSTGL
Ga0210397_100607426	3300021403	Soil	MTAAAIIIIAIAASGVLMMRFRKRWLARINIAFTNRITSLFAGWLPAFGILSHV
Ga0210387_104272732	3300021405	Soil	MSAGAIIVIAVAASGVLMMRFRKRSLAKINIIFTNRITSLFAGWLLGFGILTHIGRKSG
Ga0210386_109017483	3300021406	Soil	MNAAAITIIAIAATGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPGFGIL
Ga0210383_102435423	3300021407	Soil	MNAAAIVIIAIAATGVLMMRFRKRWLAKINIAFTNRITG
Ga0210394_103644634	3300021420	Soil	MNAAAIIIIAIAATGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPGFG
Ga0210391_103684902	3300021433	Soil	MNAAAIEIIAIAATGMLMMRFHMRWVAKINIAFTSLFTGWLPGFGILTTSDESRGKSTGL
Ga0210391_104991422	3300021433	Soil	MSTGAILAIAILSTGILMMRFRKRWLANFNIAVTNRITS
Ga0210390_105616731	3300021474	Soil	VSVGAIIVIAIAATGILLMRFRKRWLAKINIAFTNR
Ga0210392_101359994	3300021475	Soil	MSTGAILAIAILSTGILMMRFRKRWLANFNIAVTNRITSLFAGWLSELWHSH
Ga0208688_10579941	3300025480	Peatland	MNAGAIIIIAIAATGVLMMRFRKRWLAKINMAFTNRITSLFA
Ga0207649_100809831	3300025920	Corn Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAAGFRVSAFS
Ga0207652_106064391	3300025921	Corn Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAG
Ga0207681_118705312	3300025923	Switchgrass Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTN
Ga0207687_101783241	3300025927	Miscanthus Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAGWI
Ga0207700_100629424	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSIGAIIIIVIAASGVLMMRFRKRWLAKINIVLTNRITGLFAGWL
Ga0207640_101405301	3300025981	Corn Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAAGFRV
Ga0207675_1015617241	3300026118	Switchgrass Rhizosphere	MRAGAIFLIAVAATGMLMMRFRKRWLAKINIAFTNRFTGRLAGWIPGFGIL
Ga0209871_10646052	3300026217	Permafrost Soil	MSTGAILAIAVLATAILMMRFRKRWLATINIAVTNRITSLFAG
Ga0209153_12667881	3300026312	Soil	MSAGAIIAVAIAATGILLMRFRKRWLAKINIAFTNRITRLFAGWLPGFGILTHV
Ga0208366_10051853	3300027073	Forest Soil	LSAGAIIIIAIAASGVLLMRFRKRWLAKINIAFTNRIAGLFAGSLPGFGILNHVGRK
Ga0208098_10213911	3300027172	Forest Soil	MSAVVILIIAIAASGVLLMRFRKRWLAKINIAFTNRIAGLFAGSLPGFGILN
Ga0209380_105176611	3300027889	Soil	MVIAIVVAIAATGILMMRFRKRWLAKINIVFTNRITSLFAGWL
Ga0209526_105227753	3300028047	Forest Soil	MIAATIIIIAIAATGVLLMRFRKRWLAKINIAFTNRITSLFA
Ga0302224_103044582	3300028759	Palsa	MSLGVVIITLIAATGVLMMRFQKRWLAKINIAFTNRITSLFAGWLPGFG
Ga0247271_1103392	3300029903	Soil	VVIAIVIIAIAATGVLMMRFRKRWLAKINIAFTNRITGLFAGWLPDFGILXXXXLT
Ga0311369_106530191	3300029910	Palsa	MSLGVVIITLIAATGVLMMRFQKRWLAKINIAFTNRIT
Ga0302300_12054821	3300030042	Palsa	MSLGVVIITLIAATGVLMMRFQKRWLAKINIAFTNRITSLFAG
Ga0073994_100258106	3300030991	Soil	MIAGAIIIIAIAATGMLMMRFRKRWLAKINVAFTNRITGLFAGWLPGFGILRM
Ga0302326_121591661	3300031525	Palsa	MSLGVVIITLIAATGVLMMRFQKRWLAKINIAFTNRITS
Ga0307469_106116973	3300031720	Hardwood Forest Soil	MSAGAVIAVIVAIAASGVLMMRFRKRWLAKINIAFTN
Ga0307468_1014750062	3300031740	Hardwood Forest Soil	MSAGAIIVIAVAATGILMMRFRKRWLAKFNIAVTNRITSLFAG
Ga0307475_108269471	3300031754	Hardwood Forest Soil	MSTGSILAIAILATAILMMRFRKRWVAKFNIAVTNRITSLFAG
Ga0310912_104952342	3300031941	Soil	MIREHRSHLVTVIAASGVLMMRFRKRWLAKINIAFTNRITSLFAGWLPE
Ga0310911_108978412	3300032035	Soil	MNPAAIIIIAIAASGVLMMRFRKRWLAKINIAFTNRITSLFAGWLPGFGIL
Ga0307471_1015856001	3300032180	Hardwood Forest Soil	MSTGAILAIAILATGILMMRFRKRWLAKINIAFTNRITS
Ga0307471_1038156492	3300032180	Hardwood Forest Soil	MRAGAIIIIAIAASGVLMMRFRKRWLAKINIAVTNRITNLFAGWLP
Ga0307472_1012597501	3300032205	Hardwood Forest Soil	MTAAAIIIIAIAASGVLMMLFRKRWMAKINIAFTNQITGLFAGW
Ga0335074_100874415	3300032895	Soil	MSPGAVIAIVIAIAASGVSMMRFRKRWLAKINIAVTNRITGLFA
Ga0334854_003106_774_932	3300033829	Soil	MNAAAIIIIAIAATGVLMTRFRRRWLAKINIAFTNRITSRFAARLPGFGILT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088483

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences