Metagenome / Metatranscriptome Family F088323

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088323
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	45 residues
Representative Sequence	FNQTRALQPEHVAKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Number of Associated Samples	95
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	96.33 %
% of genes from short scaffolds (< 2000 bps)	92.66 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.514 % of family members)
Environment Ontology (ENVO)	Unclassified (29.358 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.706 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.65% β-sheet: 0.00% Coil/Unstructured: 51.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00210	Ferritin	33.03
PF14470	bPH_3	26.61
PF04030	ALO	1.83
PF12706	Lactamase_B_2	1.83
PF09851	SHOCT	0.92
PF10412	TrwB_AAD_bind	0.92
PF00005	ABC_tran	0.92
PF14347	DUF4399	0.92
PF00392	GntR	0.92
PF14559	TPR_19	0.92
PF00583	Acetyltransf_1	0.92
PF11383	DUF3187	0.92
PF02254	TrkA_N	0.92
PF00082	Peptidase_S8	0.92
PF02866	Ldh_1_C	0.92
PF01839	FG-GAP	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	1.83
COG0039	Malate/lactate dehydrogenase	Energy production and conversion [C]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.42 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	4.59 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.92 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.92 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.92 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	4.59 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	4.59 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.92 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	4.59 %
Williamwhitmaniaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Williamwhitmaniaceae	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	4.59 %
Williamwhitmania	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Williamwhitmaniaceae → Williamwhitmania	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	4.59 %
Williamwhitmania taraxaci	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Williamwhitmaniaceae → Williamwhitmania → Williamwhitmania taraxaci	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.92 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.92 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004082\|Ga0062384_101046035	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300004092\|Ga0062389_100345697	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300004092\|Ga0062389_100631910	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300004635\|Ga0062388_100326044	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300005163\|Ga0066823_10009051	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300005712\|Ga0070764_10455941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	763	Open in IMG/M
3300005950\|Ga0066787_10036522	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300005994\|Ga0066789_10274033	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300007265\|Ga0099794_10496250	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300009088\|Ga0099830_10487710	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300009143\|Ga0099792_10023251	All Organisms → cellular organisms → Bacteria	2790	Open in IMG/M
3300009500\|Ga0116229_10257753	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300009500\|Ga0116229_10499413	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300009500\|Ga0116229_10889019	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009623\|Ga0116133_1122387	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300009635\|Ga0116117_1188080	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300009665\|Ga0116135_1137988	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300009665\|Ga0116135_1215170	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300009701\|Ga0116228_11128238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	519	Open in IMG/M
3300010373\|Ga0134128_10452724	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300010877\|Ga0126356_11081621	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300010880\|Ga0126350_11197802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	522	Open in IMG/M
3300011120\|Ga0150983_11263877	All Organisms → cellular organisms → Bacteria	1024	Open in IMG/M
3300011120\|Ga0150983_12550444	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300012363\|Ga0137390_11822128	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300012685\|Ga0137397_10652925	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300012923\|Ga0137359_10188291	All Organisms → cellular organisms → Bacteria	1843	Open in IMG/M
3300012925\|Ga0137419_10750501	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300013503\|Ga0120127_10135573	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300014165\|Ga0181523_10713016	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300014492\|Ga0182013_10164225	All Organisms → cellular organisms → Bacteria → Proteobacteria	1381	Open in IMG/M
3300014495\|Ga0182015_10255620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1156	Open in IMG/M
3300014638\|Ga0181536_10384853	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300015052\|Ga0137411_1178905	All Organisms → cellular organisms → Bacteria	1304	Open in IMG/M
3300015245\|Ga0137409_11290692	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300016702\|Ga0181511_1321189	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300020060\|Ga0193717_1140436	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300020061\|Ga0193716_1025392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	2935	Open in IMG/M
3300020062\|Ga0193724_1044107	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300020579\|Ga0210407_10683865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	796	Open in IMG/M
3300020580\|Ga0210403_10023281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4945	Open in IMG/M
3300020581\|Ga0210399_10615432	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300020582\|Ga0210395_11025047	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300021170\|Ga0210400_10403922	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300021402\|Ga0210385_10109781	All Organisms → cellular organisms → Bacteria	1934	Open in IMG/M
3300021404\|Ga0210389_10363105	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300021407\|Ga0210383_10393811	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300021407\|Ga0210383_10691384	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300021420\|Ga0210394_10691128	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300021475\|Ga0210392_10543220	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300021477\|Ga0210398_10951337	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300021479\|Ga0210410_10291414	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300022726\|Ga0242654_10237189	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300024288\|Ga0179589_10101373	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300025463\|Ga0208193_1011743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2657	Open in IMG/M
3300027496\|Ga0208987_1102598	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Williamwhitmaniaceae → Williamwhitmania → Williamwhitmania taraxaci	522	Open in IMG/M
3300027567\|Ga0209115_1031756	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300027590\|Ga0209116_1104039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	623	Open in IMG/M
3300027591\|Ga0209733_1000371	All Organisms → cellular organisms → Bacteria	8188	Open in IMG/M
3300027603\|Ga0209331_1083811	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300027629\|Ga0209422_1040492	All Organisms → cellular organisms → Bacteria	1133	Open in IMG/M
3300027703\|Ga0207862_1224556	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300027768\|Ga0209772_10295110	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	514	Open in IMG/M
3300027807\|Ga0209208_10475673	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300027860\|Ga0209611_10149410	All Organisms → cellular organisms → Bacteria	1483	Open in IMG/M
3300027879\|Ga0209169_10257624	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300028036\|Ga0265355_1001273	All Organisms → cellular organisms → Bacteria	1601	Open in IMG/M
3300028762\|Ga0302202_10081876	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300028779\|Ga0302266_10334372	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300028788\|Ga0302189_10391326	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300028800\|Ga0265338_10727341	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300029907\|Ga0311329_10513892	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300029911\|Ga0311361_10981088	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300029922\|Ga0311363_10684757	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300029939\|Ga0311328_10567421	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300029939\|Ga0311328_10809054	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300029945\|Ga0311330_10139375	All Organisms → cellular organisms → Bacteria → Proteobacteria	2329	Open in IMG/M
3300029951\|Ga0311371_11924062	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300030020\|Ga0311344_10700883	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300030399\|Ga0311353_11736113	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300030520\|Ga0311372_11014076	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300030520\|Ga0311372_12767278	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300030524\|Ga0311357_11556187	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300030524\|Ga0311357_11742641	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300030626\|Ga0210291_10987421	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300030646\|Ga0302316_10120114	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300030738\|Ga0265462_11716369	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300030776\|Ga0075396_1574971	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300030851\|Ga0075380_10638585	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300030906\|Ga0302314_11205538	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300031128\|Ga0170823_14462067	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300031231\|Ga0170824_100465718	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300031234\|Ga0302325_10216842	All Organisms → cellular organisms → Bacteria → Proteobacteria	3259	Open in IMG/M
3300031236\|Ga0302324_100126306	All Organisms → cellular organisms → Bacteria	4259	Open in IMG/M
3300031236\|Ga0302324_101086979	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300031236\|Ga0302324_102739548	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300031249\|Ga0265339_10358431	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300031474\|Ga0170818_113279046	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300031525\|Ga0302326_10477225	All Organisms → cellular organisms → Bacteria	1900	Open in IMG/M
3300031525\|Ga0302326_10622616	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300031525\|Ga0302326_10661428	All Organisms → cellular organisms → Bacteria	1537	Open in IMG/M
3300031708\|Ga0310686_100323718	All Organisms → cellular organisms → Bacteria	1896	Open in IMG/M
3300031708\|Ga0310686_119771851	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031715\|Ga0307476_11107880	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300031726\|Ga0302321_102585254	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300031788\|Ga0302319_10467012	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300031902\|Ga0302322_100910625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1055	Open in IMG/M
3300034199\|Ga0370514_141802	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300034282\|Ga0370492_0136757	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.74%
Host-Associated	Host-Associated	8.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.82%
Aquatic	Environmental → Aquatic	11.93%
Plants	Host-Associated → Plants	8.26%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.13%
Peat	Environmental → Terrestrial → Peat	25.69%
Freshwater	Environmental → Aquatic → Freshwater	11.93%
Peat Moss	Host-Associated → Plants → Peat Moss	5.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	25.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.93%
Loam	Environmental → Terrestrial → Soil → Loam	10.09%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.50%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	5.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	25.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.09%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.34%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.51%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	13.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.17%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	9.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.34%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	5.50%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.59%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.75%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.83%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010877	Boreal forest soil eukaryotic communities from Alaska, USA - W3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013503	Permafrost microbial communities from Nunavut, Canada - A23_5cm_12M	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027590	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027807	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG (SPAdes)	Host-Associated	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029907	I_Bog_N1 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029922	III_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030626	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030851	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1010460352	3300004082	Bog Forest Soil	TFNQTRALQPEHVAKSFGERAKLFRALRQRADPVNRLRNSYFAYLLG*
Ga0062389_1003456971	3300004092	Bog Forest Soil	TPTFNQTRALQPEHVAKSFGERAKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0062389_1006319101	3300004092	Bog Forest Soil	TFNQSRALQREHVSKAFGERAKLFSALRKRTDPLNRLCNSYFSHLLE*
Ga0062388_1003260443	3300004635	Bog Forest Soil	DFASSLGGTPTFNQTRALQPEHVTKSLGERLKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0066823_100090511	3300005163	Soil	LQPEHIAKAFGDRVKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0070764_104559411	3300005712	Soil	VPTFNQSRALKPEHVAKAFGERAKLFRALRERTDPLNRLCNSYFAHLLE*
Ga0066787_100365221	3300005950	Soil	DFASRLNGTPTFNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0066789_102740332	3300005994	Soil	TFNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0099794_104962501	3300007265	Vadose Zone Soil	TPTFNQTRALQPEHVAKSFGERIKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0099830_104877101	3300009088	Vadose Zone Soil	TRALQPEHVAKSFGERLKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0099792_100232511	3300009143	Vadose Zone Soil	NQTRALQPEHVAKSFGERIKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0116229_102577531	3300009500	Host-Associated	TFNQTRALQPEHVAKPFGDRLKLFRALRQRTDPMNRLRNSYFEYLLG*
Ga0116229_104994131	3300009500	Host-Associated	VPTFNQTRALQPEHVTKAFGERARLFRALRQLTDPQNRLRNSYFAYLLE*
Ga0116229_108890191	3300009500	Host-Associated	TRALQPEHVVKAFGERARLFSALRRRTDPLNRLNNSYFSYLLP*
Ga0116133_11223871	3300009623	Peatland	EHVAKAFGERARLFRALRQRTDPLNRLYNNYFAGLFD*
Ga0116117_11880801	3300009635	Peatland	PTFNQSRALKPEHVAKAFGERAKLFRALRQRTDPLNRLCNSYFSHLLD*
Ga0116135_11379882	3300009665	Peatland	VQKAFGERAKLFRALRERTDPLNRLCNSYFAHLLE*
Ga0116135_12151701	3300009665	Peatland	FNQSRALKPEHVAKAFGERAKLFRALRQRTDPLNRLCNSYFSHLLD*
Ga0116228_111282382	3300009701	Host-Associated	FNQTRALQPEHVTKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLE*
Ga0134128_104527241	3300010373	Terrestrial Soil	RALQPEHVAKSFGERVKLFKALRQRTDPLNRLRNSYFAHLLG*
Ga0126356_110816211	3300010877	Boreal Forest Soil	LQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0126350_111978021	3300010880	Boreal Forest Soil	ALQPEHVAKAFGDRAKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0150983_112638773	3300011120	Forest Soil	VAKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0150983_125504441	3300011120	Forest Soil	TFNQTRALQPEHVTKAFGERVKLFRALRQRTDPLNRLHNAYFSYLLG*
Ga0137390_118221282	3300012363	Vadose Zone Soil	IDFNDFASANGGTPTFNQTRALQPDHVAKSFGERIKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0137397_106529252	3300012685	Vadose Zone Soil	EHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0137359_101882911	3300012923	Vadose Zone Soil	TFNQTRALQPEHVAKAFGERLKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0137419_107505011	3300012925	Vadose Zone Soil	HVAKSFGERLKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0120127_101355731	3300013503	Permafrost	FNQTRALQPEHVAKSFGERLKLFRALRSRTDPLNRLRNSYFAYLLG*
Ga0181523_107130162	3300014165	Bog	KPSHVSTAFGERVKLFRALRQRTDPLNRLCNSYFSHLMD*
Ga0182013_101642251	3300014492	Bog	HINKAFGDRARLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0182015_102556201	3300014495	Palsa	TPTFNQTRALQVEHVSKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG*
Ga0181536_103848531	3300014638	Bog	RALKPQHVSKAFGERAKLFRALRQRTDPLNRLCNSYFDHLLE*
Ga0137411_11789053	3300015052	Vadose Zone Soil	ASALGGTPTFNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0137409_112906921	3300015245	Vadose Zone Soil	LIDFNDFASGLGGTPTFNQTRALQPEHVAKSFGDRVKLFRALRQRTDPLNRLRNSYFAHLLG*
Ga0181511_13211891	3300016702	Peatland	NQSRALKPSHVSTAFGERVKLFRALRQRTDPLNRLCNSYFSHLMD
Ga0193717_11404362	3300020060	Soil	PEHVAKAFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0193716_10253922	3300020061	Soil	VAKAFGERAKLFRALRKRTDPLNRLRNSYFAYLLG
Ga0193724_10441073	3300020062	Soil	PEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAHLLG
Ga0210407_106838651	3300020579	Soil	QPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0210403_100232819	3300020580	Soil	DFASAAGGTPTFNQTRALQPEHVAKSFGERLKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0210399_106154322	3300020581	Soil	QPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAHLLG
Ga0210395_110250471	3300020582	Soil	FNDFASSLGGTPTFNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0210400_104039223	3300021170	Soil	HVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0210385_101097811	3300021402	Soil	FAAAHGGTPTFNQTRALQPEHVTKSFGERAKLFRALRQRTDPLNRLHNSYFAHLLG
Ga0210389_103631053	3300021404	Soil	EHVAKAFGDRIKLFKALRQRTDPLNRLCNSYFAHLLET
Ga0210383_103938111	3300021407	Soil	LQPEHVAKAFGDRVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0210383_106913841	3300021407	Soil	LQPEHVAKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0210394_106911281	3300021420	Soil	TPTFNQTRALQPEHVTKAFGERARLFRALRQRTDPLNRLRNSYFAHLLG
Ga0210392_105432201	3300021475	Soil	QPEHISRAFGERAKLFRALRQRTDPLNRLRNSYFAHLLG
Ga0210398_109513371	3300021477	Soil	SHGGTPTFNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0210410_102914141	3300021479	Soil	PEHVAKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0242654_102371892	3300022726	Soil	GTPTFNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAHLLG
Ga0179589_101013731	3300024288	Vadose Zone Soil	VAKSFGERVKLFRALRQRTDTLNRLRNSYFAHLLG
Ga0208193_10117431	3300025463	Peatland	EHIAKSFGERAKLFRALRQRTDPVNRLRNSYFAYLLG
Ga0208987_11025982	3300027496	Forest Soil	TPTFNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0209115_10317561	3300027567	Forest Soil	VAKAFGERAKLFRALCERTDPLNRLCNSYFAHLLET
Ga0209116_11040391	3300027590	Forest Soil	GGTPTFNQTRALQPDHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0209733_100037110	3300027591	Forest Soil	FNQTRALQPEHVAKSFGERVKLFRALRQRTDPLNRLRNSYFAYLFG
Ga0209331_10838111	3300027603	Forest Soil	DFNEFASSQGGTPTFNQTRALQPEHVAKSFGERAKLFRALRQRTDPVNRLRNSYFSYLLG
Ga0209422_10404923	3300027629	Forest Soil	PEHVTKSFGERVKLFRALRQRTDPLNRLRNSYFSHLFG
Ga0207862_12245562	3300027703	Tropical Forest Soil	RGLQPEHVVKSFGERAKLFRALRRRTDPLNRLQNSYFAHLLD
Ga0209772_102951101	3300027768	Bog Forest Soil	MGGTPTFNQTRALQPEHVAKSFGERVKLFSALRQRTDPLNRLRNSYFAHLLG
Ga0209208_104756732	3300027807	Host-Associated	QSRALKAEHIEKAFGERARLFKALRRRTDALNRLDNSYFANLLG
Ga0209611_101494101	3300027860	Host-Associated	TFNQTRALQPEHVAKPFGDRLKLFRALRQRTDPMNRLRNSYFEYLLG
Ga0209169_102576241	3300027879	Soil	TFNQTRALQPEHVTKSFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0265355_10012734	3300028036	Rhizosphere	VPTFNQTRALQPEHVAKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0302202_100818761	3300028762	Bog	LDGIPTFNQTRALTPEHVSRALGERVRLFRALRQRTDSLNRLQNAYFSGLFG
Ga0302266_103343722	3300028779	Bog	QTRSLLREHVSKALGDRGRLFRQLRNRTDPLNRLQNSYFAALLG
Ga0302189_103913262	3300028788	Bog	LQAEHVSKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0265338_107273411	3300028800	Rhizosphere	NQTRALQPEHVSKAFGERLKLFRALRQRTDPTNRLRNSYFTYLMG
Ga0311329_105138921	3300029907	Bog	TPTFNQTRALQAEHVSKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0311361_109810881	3300029911	Bog	LQAEHVAKAFGDRAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0311363_106847573	3300029922	Fen	PTFNQTRALQAEHVSKSFGERVKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0311328_105674211	3300029939	Bog	ALGGTPTFNQTRALQPEHVAKAFAERAKLFRALRQRTDPLNRLRNSYFSYLLG
Ga0311328_108090541	3300029939	Bog	RALQPEHIVKAFGERARLFRALRQRTDPLNRLRNSYFAYLLG
Ga0311330_101393751	3300029945	Bog	FASKLDGIPTFNQTRALTPEHVSRALGERVRLFRALRQRTDSLNRLQNAYFSGLFG
Ga0311371_119240621	3300029951	Palsa	RALQPEHVTKAFGERGKLFRALRQRTDPLNRLHNSYFAYLLS
Ga0311344_107008831	3300030020	Bog	VPTFNQSRALKPEHIAKAFGERAKLFRALRQRTDPLNRLCNSYFSHLLD
Ga0311353_117361132	3300030399	Palsa	SGWGGVPTFNQTRALQPEHIARAFADRAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0311372_110140763	3300030520	Palsa	EHVSKAFGERAKLFRALRHRTDPLNRLRNSYFAYLLD
Ga0311372_127672782	3300030520	Palsa	TFNQSRALKPEHVAKAFGERAKLFGALRQRTDPLNRLCNSYFAHLLV
Ga0311357_115561871	3300030524	Palsa	LKPEHVQKAFGERAKLFRALRERTDPLNRLCNSYFAHLLE
Ga0311357_117426412	3300030524	Palsa	ALGGIPTFNQTRALQPEHVAKAFAERAKLFRALRQRTDPLNRLRNSYFSYLLG
Ga0210291_109874211	3300030626	Soil	GGTPTFNQTRALQPEHVAKSFGERVKLFSALRQRTDPLNRLRNSYFAHLLG
Ga0302316_101201141	3300030646	Palsa	DFNDFASGWGGVPTFNQTRALQPEHIARAFADRAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0265462_117163691	3300030738	Soil	NDFASGMGGTPTFNQTRALQPEHVAKSFGERVKLFSALRQRTDPLNRLRNSYFAHLLG
Ga0075396_15749711	3300030776	Soil	RALQPEHVAKAFCERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0075380_106385851	3300030851	Soil	AHCSQHVLKAFGERAKLFRALRQRTDPVNRLRNSYFAYLLG
Ga0302314_112055382	3300030906	Palsa	HVQKAFGERAKLFRALRERTDPLNRLCNSYFAHLLE
Ga0170823_144620673	3300031128	Forest Soil	VPTFNQSRALQPEHVAKAFGERAKLFGALRQRTDPLNRLRNSYFAYLLG
Ga0170824_1004657182	3300031231	Forest Soil	VAKAFGERAKLFRALRQRTDPLNRLRNSYFAHLLG
Ga0302325_102168426	3300031234	Palsa	QPEHVTKSFGERAKLFRALRQRTDPLNRMHNSYFAYLLG
Ga0302324_1001263067	3300031236	Palsa	DFNDFASALGGIPTFNQTRALQPEHVAKAFAERAKLFRALRQRTDPLNRLRNSYFSYLLG
Ga0302324_1010869793	3300031236	Palsa	ALQPEHVAKSFGERLKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0302324_1027395481	3300031236	Palsa	NQTRALQPEHIARAFADRAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0265339_103584312	3300031249	Rhizosphere	TPTFNQTRALQPEHVSKAFGERLKLFRALRQRTDPTNRLRNSYFTYLMG
Ga0170818_1132790461	3300031474	Forest Soil	GLGGTPTFNQTRALQPEHVAKSFGDRVKLFRALRQRTDPLNRLRNSYFAHLLG
Ga0302326_104772251	3300031525	Palsa	NQSRALKPEHVQKAFGERAKLFRALRERTDPLNRLCNSYFAHLLE
Ga0302326_106226164	3300031525	Palsa	FNQTRALQPEHVAKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0302326_106614281	3300031525	Palsa	TRALQPEHVAKSFGERLKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0310686_1003237181	3300031708	Soil	HVSKSFGERLKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0310686_1197718512	3300031708	Soil	RALKPEHVTKAFGDRIKLFKALRQRADPLNRLCNSYFSHLLEA
Ga0307476_111078801	3300031715	Hardwood Forest Soil	QTRALQPEHVAKSFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0302321_1025852542	3300031726	Fen	DFNDFASALGGTPTFNQTRALQVEHVTKSFGERAKLFRALRQRTDPLNRLRNAYFAYLLG
Ga0302319_104670124	3300031788	Bog	LQPEHVAKAFGERIKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0302322_1009106252	3300031902	Fen	QPEHVSKAFGDRLKLFRALRKRTDPINRLQHSYFANLIG
Ga0370514_141802_511_618	3300034199	Untreated Peat Soil	VAKAFGERAKLFRALRQRTDPLNRLRNSYFAYLLG
Ga0370492_0136757_854_1000	3300034282	Untreated Peat Soil	PTFNQSRALKPEHVAKAFGERAKLFRALRQRTDPLNRLCNSYFSHLLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088323

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences