NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F088246

Metagenome Family F088246

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088246
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 42 residues
Representative Sequence MKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYAR
Number of Associated Samples 4
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 4.72 %
% of genes near scaffold ends (potentially truncated) 16.51 %
% of genes from short scaffolds (< 2000 bps) 50.46 %
Associated GOLD sequencing projects 4
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.578 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton
(93.578 % of family members)
Environment Ontology (ENVO) Unclassified
(93.578 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(94.495 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62
1Ga0068872_105884813
2Ga0114339_12059291
3Ga0114339_12285091
4Ga0114339_12884132
5Ga0114356_10025461
6Ga0114356_10027486
7Ga0114356_10029387
8Ga0114356_10032374
9Ga0114356_10061081
10Ga0114356_10061724
11Ga0114356_10074043
12Ga0114356_10077061
13Ga0114356_10078702
14Ga0114356_10104123
15Ga0114356_10115071
16Ga0114356_10141103
17Ga0114356_10156643
18Ga0114356_10167242
19Ga0114356_10167263
20Ga0114356_10180111
21Ga0114356_10231892
22Ga0114356_10233091
23Ga0114356_10255624
24Ga0114356_10300164
25Ga0114356_10327481
26Ga0114356_10362016
27Ga0114356_10371771
28Ga0114356_10408083
29Ga0114356_10434083
30Ga0114356_10475254
31Ga0114356_10525542
32Ga0114356_10528121
33Ga0114356_10538421
34Ga0114356_10569282
35Ga0114356_10611541
36Ga0114356_10628245
37Ga0114356_10641482
38Ga0114356_10687713
39Ga0114356_10708622
40Ga0114356_10796323
41Ga0114356_10826513
42Ga0114356_10880673
43Ga0114356_10920811
44Ga0114356_10932811
45Ga0114356_10994311
46Ga0114356_10995945
47Ga0114356_11057673
48Ga0114356_11067591
49Ga0114356_11138183
50Ga0114356_11206291
51Ga0114356_11214041
52Ga0114356_11227941
53Ga0114356_11233523
54Ga0114356_11256871
55Ga0114356_11430542
56Ga0114356_11462451
57Ga0114356_11479931
58Ga0114356_11530143
59Ga0114356_11566871
60Ga0114356_11623032
61Ga0114356_11650081
62Ga0114356_11678251
63Ga0114356_11705031
64Ga0114356_11736541
65Ga0114356_11786362
66Ga0114356_11799701
67Ga0114356_11830061
68Ga0114356_11836481
69Ga0114356_11902671
70Ga0114356_11943091
71Ga0114356_11965481
72Ga0114356_12024812
73Ga0114356_12024991
74Ga0114356_12156562
75Ga0114356_12211291
76Ga0114356_12260681
77Ga0114356_12343171
78Ga0114356_12539351
79Ga0114356_12639181
80Ga0114356_12644972
81Ga0114356_12771852
82Ga0114356_12960282
83Ga0114356_13526551
84Ga0114356_13595671
85Ga0114356_13722341
86Ga0114356_13832141
87Ga0114356_13969572
88Ga0114356_13996731
89Ga0114356_14176431
90Ga0114356_14182251
91Ga0114356_14261062
92Ga0114356_14280181
93Ga0114356_14625181
94Ga0114356_14672311
95Ga0114356_14792671
96Ga0114356_14806271
97Ga0114356_14857781
98Ga0114356_14964101
99Ga0114356_14964181
100Ga0114356_15088291
101Ga0114356_15154842
102Ga0114356_15521821
103Ga0114356_15570591
104Ga0247722_100524491
105Ga0247722_101565891
106Ga0247722_102217801
107Ga0247722_102420221
108Ga0247722_102656041
109Ga0247722_103216311
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 42.65%    β-sheet: 0.00%    Coil/Unstructured: 57.35%
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Variant

510152025303540MKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYARSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
6.4%93.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Lake
Freshwater, Plankton
Deep Subsurface Sediment
93.6%5.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0068872_1058848133300005528Freshwater LakeMKTQCLQTNEIQHCLGKESALGAGGGVERVALIKSLIYAR*
Ga0114339_120592913300008106Freshwater, PlanktonIYVETDCLQTNKTQHYLGKENA*EAGGVEERVGVN*
Ga0114339_122850913300008106Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGERGGVERVALIKSLIYVR*
Ga0114339_128841323300008106Freshwater, PlanktonLQTNEAQHCLVKESAGEAGGGVERVALIKSLIYAR*
Ga0114356_100254613300008121Freshwater, PlanktonMKTQCLQTSETQHCLGKESALGVGGGVERVALIKSLIYVREKECA*
Ga0114356_100274863300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYAR*
Ga0114356_100293873300008121Freshwater, PlanktonMKTQCLPSNEMQHCLGKESALGAGGGVERIALIKSLIYARKKECA*
Ga0114356_100323743300008121Freshwater, PlanktonMKTHCLQTTEMQDCLGKESALGARGGVERVALIKSLIYARWKRCA*
Ga0114356_100610813300008121Freshwater, PlanktonMKTQCLQTNEKQHCFGKESALGARGGVERDALIKSLIYVR*
Ga0114356_100617243300008121Freshwater, PlanktonMYMKTQCLQANETQHCLGKESALGAGGGVERVALIKSLIYTR*
Ga0114356_100740433300008121Freshwater, PlanktonMKTLCLQTNEIQHCLEKESA*GVGGGVERVALIKSLIYAR*
Ga0114356_100770613300008121Freshwater, PlanktonMKTQCLQTNETQHCSGKKSALEARGGVERDALIKSLIYSR*
Ga0114356_100787023300008121Freshwater, PlanktonMKKQCLQTNETQHCLGKESALGAGGGVERVVLIKSLIYAR*
Ga0114356_101041233300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGKERALGAGGGVERVALIKSSIYVR*
Ga0114356_101150713300008121Freshwater, PlanktonMKTQCLQTNETQYCLGKESALGARGGVERVALIKSLIYAR*
Ga0114356_101411033300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESAREAGGGVERVVLTKSLIYVR*
Ga0114356_101566433300008121Freshwater, PlanktonMKTKCLQTNGMQHCLGKESALGAERVALIKSLIYARKKERT*
Ga0114356_101672423300008121Freshwater, PlanktonMKTQCLQTNEMRHCFGKVSALGSRGGVERDALIKSLIYAR*
Ga0114356_101672633300008121Freshwater, PlanktonMKTQCLQTNGMQDCLGKESAFGAGSVALIKSLIYARKKERA*
Ga0114356_101801113300008121Freshwater, PlanktonMKTQCLQTNETQHCLGRESALGAGGGVERVGLIKSLMGGFHL*
Ga0114356_102318923300008121Freshwater, PlanktonMKTKCLQINETQHCLGKESAPEAGGGVERVVLIKNLIYAR*
Ga0114356_102330913300008121Freshwater, PlanktonMWHCFGKESALGAGGGVESVALIKSLIYARKKGRA*
Ga0114356_102556243300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGKESAIGAGGGVERVALIKSLIYVK*
Ga0114356_103001643300008121Freshwater, PlanktonMKTQCLQTKEMQHCLGKESALGVGGEVERVALIKSLIL*
Ga0114356_103274813300008121Freshwater, PlanktonMKTQCLQTNETQYCLGKERALGARGGVERVALIKSLIYA*
Ga0114356_103620163300008121Freshwater, PlanktonMLWYHTYTETQCLQTNEMQHCLGKESALGAEGGVERVALIKSLIYSRKKE*
Ga0114356_103717713300008121Freshwater, PlanktonMETQCLQTNEAQHCLGKESALGAIGGGESVALIKSLI*
Ga0114356_104080833300008121Freshwater, PlanktonMKKQCLQTNETQHCLGKESALGVGGGVERVVLIKSLIYTR*
Ga0114356_104340833300008121Freshwater, PlanktonMKAQCLQTNETQHCLVKESALGAGGGVERVAVIKSLIHTR*
Ga0114356_104752543300008121Freshwater, PlanktonMKTQCLQPNETQHCFGKESALGERGGVERVALIKSLIYTRGKEHA*
Ga0114356_105255423300008121Freshwater, PlanktonMKTQCLQTNETYHCLGKESALGARGGVERVALIKSLIYSRWKERA*
Ga0114356_105281213300008121Freshwater, PlanktonMKTQCLQTNEAWHCLGKESALGARGGVERDALIKSLIYAR*
Ga0114356_105384213300008121Freshwater, PlanktonMKTQCSQTNEMQHCLGKESALGAGGGVERVALIKSLFDARYKERA*
Ga0114356_105692823300008121Freshwater, PlanktonMKTQRLQTNETQHCLGKESAREAGGGVERVALIKSLIYGR*
Ga0114356_106115413300008121Freshwater, PlanktonMKTQCLQTNEMQHCFGNESALGARGGVERDALIKSLIYARRKEYA*
Ga0114356_106282453300008121Freshwater, PlanktonMKTKCLQTNEKQHCMGKESALGARGGVERVALIKSLIYARKKECA*
Ga0114356_106414823300008121Freshwater, PlanktonMKTQCLQTNEIQHCLGKESALEVRGGVERVTLIKSLIYTRWKECP*
Ga0114356_106877133300008121Freshwater, PlanktonMKTQCLQTNEMQHYLGKENALGVGGGVERVALIKSLI*
Ga0114356_107086223300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGKESALGEGGGVERVALIKSLRRRVAKFF*
Ga0114356_107963233300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGVGEGVERVGLIKSLIYAR
Ga0114356_108265133300008121Freshwater, PlanktonMKTQCLQTNETQHCLEKESALGAGGGVERVALIKSLIYAR*
Ga0114356_108806733300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGAKGGVKRVALIKSLIYARRKEHA*
Ga0114356_109208113300008121Freshwater, PlanktonFDTHIYMKTQCLQTNETQHCLGKESALGVGGGVERVALIKSLIYVR*
Ga0114356_109328113300008121Freshwater, PlanktonMKTQCFQTNEMQHCLGKESALGAGGGVERVVLIKSLIYARKKE
Ga0114356_109943113300008121Freshwater, PlanktonMKTNEMQHCLGKESALGSGVGVERLALMKSLIYAR*
Ga0114356_109959453300008121Freshwater, PlanktonTINMKTLCLQTNEMQHCLGKESALGARGGVERVALIKSSIYAREV*
Ga0114356_110576733300008121Freshwater, PlanktonMKTQCLQTNEIQHCLGEESALGAGGGVERVALIKSLIYAR*
Ga0114356_110675913300008121Freshwater, PlanktonMKTQCLQTNEMQHNVIVLGKKSALGARGGVDRGALIKV*
Ga0114356_111381833300008121Freshwater, PlanktonMKTQCLQTNVTQHCLGKESALGAGGGVERVALIKSLIYAREKERA*
Ga0114356_112062913300008121Freshwater, PlanktonMRTQCLQTKETQHCLEKESALGAGGGGERVALIKSLI*
Ga0114356_112140413300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYARKKERA*
Ga0114356_112279413300008121Freshwater, PlanktonMKTKFLQTNEAHHCLGKESALGAGGGVERVALIKSLIYAR*
Ga0114356_112335233300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGKESSLGAGRGVERVALIKSLIYAR*
Ga0114356_112568713300008121Freshwater, PlanktonMKTQCLQTNENQHCLGKESALGERGGVERVALIKSLMYERLKERA*
Ga0114356_114305423300008121Freshwater, PlanktonMKTQCLQTNGTQHCLGKESALGAGRVALIKSLIYARKKERA*
Ga0114356_114624513300008121Freshwater, PlanktonMKTQCLQTNETQHYLGKESALEAGGGVERVALIKSLI*
Ga0114356_114799313300008121Freshwater, PlanktonMKTQCLQTNETQHCFGKESALGAGGGVEIVALIKSLIYARRKERA*
Ga0114356_115301433300008121Freshwater, PlanktonCLQTNETQHYAIMGKENALEAGGWSRERVALIKS*
Ga0114356_115668713300008121Freshwater, PlanktonMKTQCSQTNEMQHCLGKESALGARGGEERDALIKSLIYAR*
Ga0114356_116230323300008121Freshwater, PlanktonMKKQCLQTNEMQHCLGKESAVGAGGGVERVALIKSLIYAR*
Ga0114356_116500813300008121Freshwater, PlanktonMLWYNFFIKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYAR*
Ga0114356_116782513300008121Freshwater, PlanktonMKTQCLLANETQHCLGKESVLGAGGGVERVALIKSLIYMR*
Ga0114356_117050313300008121Freshwater, PlanktonVKTQCLQTNETQHYLGKESALGAGGGVERVALIKSLINAR
Ga0114356_117365413300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGVRGGVAQVALIKSLIYARWKERA*
Ga0114356_117863623300008121Freshwater, PlanktonMKTQCLKTKETQHCLGKESALGAIGGGESVALIKSLI*
Ga0114356_117997013300008121Freshwater, PlanktonMKTQCLQTNVTQHCLGKESALGALGGVERVELMKSLIYVR*
Ga0114356_118300613300008121Freshwater, PlanktonMLRTTIYMKTQCLQTNETQHCLGKESALGSGGGVEKVALIKSLIYAR*
Ga0114356_118364813300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGKESALGVGGVVERVALIKSLIYAR*
Ga0114356_119026713300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYVR*
Ga0114356_119430913300008121Freshwater, PlanktonMKTQCLQTNEMQHCLEKESALGAGGGVERVALIKSLIYAR*
Ga0114356_119654813300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGRESALGVGGGVERVEIIKSLIYAR*
Ga0114356_120248123300008121Freshwater, PlanktonMKTEYLQRNEMQHCFGKESAREVGGGVERVALIKSLICAR*
Ga0114356_120249913300008121Freshwater, PlanktonMKIKSFDTTIYMKTYCLQTNETQHCLGKESAREARGGVERVALIKSLIYVREKECA*
Ga0114356_121565623300008121Freshwater, PlanktonQTNETRHCFGKESALGAGGGVESVALIKSLIYARKKERA*
Ga0114356_122112913300008121Freshwater, PlanktonMKTQCLQKNETQHCLGKESALGAGGGVERVALIKSFIYAR*
Ga0114356_122606813300008121Freshwater, PlanktonMKTQFLQTNETQHCLGKESALGARGGVERVALIKSLIYAR*
Ga0114356_123431713300008121Freshwater, PlanktonIYMKTQCLQTNETQHCFGKESALGARGGVERDALIKSLIYAR*
Ga0114356_125393513300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGAGEGVERVVLFKSLIYAR*
Ga0114356_126391813300008121Freshwater, PlanktonMKTQCLQTNETQHCFGKESALGARGGVERDALIKS
Ga0114356_126449723300008121Freshwater, PlanktonMQTQCLQTNETQHCLGMENALGAGGEVERVALIKSLIYA*
Ga0114356_127718523300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGLGEGVERVGLIKSLIYAR*
Ga0114356_129602823300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGKENALGAGGGVDSVALIKSLIYVRKKECA*
Ga0114356_135265513300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYARKKEPA*
Ga0114356_135956713300008121Freshwater, PlanktonMKTQCLQTNEMQHCLGKESALGARGGLERVALIKSLIYTRWKERA*
Ga0114356_137223413300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKDSAVVAGGGVERVALIKSLIYTRKKERN*
Ga0114356_138321413300008121Freshwater, PlanktonMKTQYLQTNEMQHLLGKESALGARGGVERDALIKSLIYAR
Ga0114356_139695723300008121Freshwater, PlanktonMHCTAIYMKTQCLQTNETQHVSGKESALGAIGGGESLALIKSLI*
Ga0114356_139967313300008121Freshwater, PlanktonFGTTIYMKTQCLQTNEMQHCLGKESALGVGGGVERVVLIKSLIYAR*
Ga0114356_141764313300008121Freshwater, PlanktonMKTQCLQANETQHCLGKENALGARGGVEREALIKSLIY
Ga0114356_141822513300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESASGAIGGVERDALIKSLIYAR*
Ga0114356_142610623300008121Freshwater, PlanktonMKTQCLQTNETQHCLEKESALVSGGGVERVALIKSLIYARRKELA*
Ga0114356_142801813300008121Freshwater, PlanktonMKTQCLQTNETQHCLGKESALGAGGGLEGVVLIKSLIFAR*
Ga0114356_146251813300008121Freshwater, PlanktonMKTQCLQTNESQHCLGKESALGAGGVQRAALIKSLIYTRQKEHA*
Ga0114356_146723113300008121Freshwater, PlanktonMKTQCLQTNETQYCLGKESALEVGGGVERVALIKSLIYVR*
Ga0114356_147926713300008121Freshwater, PlanktonMKTQCLHTNETQHCLGKESALGAGEGVERVALIKSLIYARKEDNA*
Ga0114356_148062713300008121Freshwater, PlanktonMKTLCLQTNEMQHCLGKESALGAGGGVERVALIKSLI*
Ga0114356_148577813300008121Freshwater, PlanktonNKCFCTTIYMKTHCLQTNKMQHCLGKESALGEGGGVERVVLIKSLIYVR*KECA*
Ga0114356_149641013300008121Freshwater, PlanktonMKTQCLQTNETPHCLGKESALVAVGGVERVALIKNLIYSR*
Ga0114356_149641813300008121Freshwater, PlanktonMKIQCLQTNEMKHCFGNESALGAGGGVERVALIKSLIYARKNEHD*
Ga0114356_150882913300008121Freshwater, PlanktonIYMKTQCLQTNEMQHCLGKESALGAGGGVERVALIKSLIYA*
Ga0114356_151548423300008121Freshwater, PlanktonMKTQCLQTNETQYCFGKESALGARGGVERDALIKSLIYVR
Ga0114356_155218213300008121Freshwater, PlanktonIGTSIYIKTQCLQTNETQHCLRKESALGAGGGVERVALIKSLIYAR*
Ga0114356_155705913300008121Freshwater, PlanktonMKTQCLQTNEIQHYLGKENAFGVGGRVERVALIKSL
Ga0247722_1005244913300028027Deep Subsurface SedimentMKTQCLQTNETQHCLGQESALGVGGGVERVALIKSLIYAR
Ga0247722_1015658913300028027Deep Subsurface SedimentMKTQCLQTNETQHYLGKENALGAGGGVKRVALNKSLI
Ga0247722_1022178013300028027Deep Subsurface SedimentMKTQCLQTNEMQHCLGKESALGAGGGVESLALIKSLIYAR
Ga0247722_1024202213300028027Deep Subsurface SedimentMRLYTCTAIYMKTQCLQTNEMQHCLGKENALGARGGVERVALIKSLI
Ga0247722_1026560413300028027Deep Subsurface SedimentMKTQYLQTNEMQHCLGKENALGARGGGESVELIKSLI
Ga0247722_1032163113300028027Deep Subsurface SedimentMKTQCLQTNEMQHCLGKESALEARGGVEREALIKSLI


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