Basic Information | |
---|---|
Family ID | F088246 |
Family Type | Metagenome |
Number of Sequences | 109 |
Average Sequence Length | 42 residues |
Representative Sequence | MKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYAR |
Number of Associated Samples | 4 |
Number of Associated Scaffolds | 109 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 4.72 % |
% of genes near scaffold ends (potentially truncated) | 16.51 % |
% of genes from short scaffolds (< 2000 bps) | 50.46 % |
Associated GOLD sequencing projects | 4 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.31 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (93.578 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton (93.578 % of family members) |
Environment Ontology (ENVO) | Unclassified (93.578 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (94.495 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 42.65% β-sheet: 0.00% Coil/Unstructured: 57.35% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.31 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Freshwater Lake Freshwater, Plankton Deep Subsurface Sediment |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0068872_105884813 | 3300005528 | Freshwater Lake | MKTQCLQTNEIQHCLGKESALGAGGGVERVALIKSLIYAR* |
Ga0114339_12059291 | 3300008106 | Freshwater, Plankton | IYVETDCLQTNKTQHYLGKENA*EAGGVEERVGVN* |
Ga0114339_12285091 | 3300008106 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGERGGVERVALIKSLIYVR* |
Ga0114339_12884132 | 3300008106 | Freshwater, Plankton | LQTNEAQHCLVKESAGEAGGGVERVALIKSLIYAR* |
Ga0114356_10025461 | 3300008121 | Freshwater, Plankton | MKTQCLQTSETQHCLGKESALGVGGGVERVALIKSLIYVREKECA* |
Ga0114356_10027486 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYAR* |
Ga0114356_10029387 | 3300008121 | Freshwater, Plankton | MKTQCLPSNEMQHCLGKESALGAGGGVERIALIKSLIYARKKECA* |
Ga0114356_10032374 | 3300008121 | Freshwater, Plankton | MKTHCLQTTEMQDCLGKESALGARGGVERVALIKSLIYARWKRCA* |
Ga0114356_10061081 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEKQHCFGKESALGARGGVERDALIKSLIYVR* |
Ga0114356_10061724 | 3300008121 | Freshwater, Plankton | MYMKTQCLQANETQHCLGKESALGAGGGVERVALIKSLIYTR* |
Ga0114356_10074043 | 3300008121 | Freshwater, Plankton | MKTLCLQTNEIQHCLEKESA*GVGGGVERVALIKSLIYAR* |
Ga0114356_10077061 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCSGKKSALEARGGVERDALIKSLIYSR* |
Ga0114356_10078702 | 3300008121 | Freshwater, Plankton | MKKQCLQTNETQHCLGKESALGAGGGVERVVLIKSLIYAR* |
Ga0114356_10104123 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGKERALGAGGGVERVALIKSSIYVR* |
Ga0114356_10115071 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQYCLGKESALGARGGVERVALIKSLIYAR* |
Ga0114356_10141103 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESAREAGGGVERVVLTKSLIYVR* |
Ga0114356_10156643 | 3300008121 | Freshwater, Plankton | MKTKCLQTNGMQHCLGKESALGAERVALIKSLIYARKKERT* |
Ga0114356_10167242 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMRHCFGKVSALGSRGGVERDALIKSLIYAR* |
Ga0114356_10167263 | 3300008121 | Freshwater, Plankton | MKTQCLQTNGMQDCLGKESAFGAGSVALIKSLIYARKKERA* |
Ga0114356_10180111 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGRESALGAGGGVERVGLIKSLMGGFHL* |
Ga0114356_10231892 | 3300008121 | Freshwater, Plankton | MKTKCLQINETQHCLGKESAPEAGGGVERVVLIKNLIYAR* |
Ga0114356_10233091 | 3300008121 | Freshwater, Plankton | MWHCFGKESALGAGGGVESVALIKSLIYARKKGRA* |
Ga0114356_10255624 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGKESAIGAGGGVERVALIKSLIYVK* |
Ga0114356_10300164 | 3300008121 | Freshwater, Plankton | MKTQCLQTKEMQHCLGKESALGVGGEVERVALIKSLIL* |
Ga0114356_10327481 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQYCLGKERALGARGGVERVALIKSLIYA* |
Ga0114356_10362016 | 3300008121 | Freshwater, Plankton | MLWYHTYTETQCLQTNEMQHCLGKESALGAEGGVERVALIKSLIYSRKKE* |
Ga0114356_10371771 | 3300008121 | Freshwater, Plankton | METQCLQTNEAQHCLGKESALGAIGGGESVALIKSLI* |
Ga0114356_10408083 | 3300008121 | Freshwater, Plankton | MKKQCLQTNETQHCLGKESALGVGGGVERVVLIKSLIYTR* |
Ga0114356_10434083 | 3300008121 | Freshwater, Plankton | MKAQCLQTNETQHCLVKESALGAGGGVERVAVIKSLIHTR* |
Ga0114356_10475254 | 3300008121 | Freshwater, Plankton | MKTQCLQPNETQHCFGKESALGERGGVERVALIKSLIYTRGKEHA* |
Ga0114356_10525542 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETYHCLGKESALGARGGVERVALIKSLIYSRWKERA* |
Ga0114356_10528121 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEAWHCLGKESALGARGGVERDALIKSLIYAR* |
Ga0114356_10538421 | 3300008121 | Freshwater, Plankton | MKTQCSQTNEMQHCLGKESALGAGGGVERVALIKSLFDARYKERA* |
Ga0114356_10569282 | 3300008121 | Freshwater, Plankton | MKTQRLQTNETQHCLGKESAREAGGGVERVALIKSLIYGR* |
Ga0114356_10611541 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCFGNESALGARGGVERDALIKSLIYARRKEYA* |
Ga0114356_10628245 | 3300008121 | Freshwater, Plankton | MKTKCLQTNEKQHCMGKESALGARGGVERVALIKSLIYARKKECA* |
Ga0114356_10641482 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEIQHCLGKESALEVRGGVERVTLIKSLIYTRWKECP* |
Ga0114356_10687713 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHYLGKENALGVGGGVERVALIKSLI* |
Ga0114356_10708622 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGKESALGEGGGVERVALIKSLRRRVAKFF* |
Ga0114356_10796323 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGVGEGVERVGLIKSLIYAR |
Ga0114356_10826513 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLEKESALGAGGGVERVALIKSLIYAR* |
Ga0114356_10880673 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGAKGGVKRVALIKSLIYARRKEHA* |
Ga0114356_10920811 | 3300008121 | Freshwater, Plankton | FDTHIYMKTQCLQTNETQHCLGKESALGVGGGVERVALIKSLIYVR* |
Ga0114356_10932811 | 3300008121 | Freshwater, Plankton | MKTQCFQTNEMQHCLGKESALGAGGGVERVVLIKSLIYARKKE |
Ga0114356_10994311 | 3300008121 | Freshwater, Plankton | MKTNEMQHCLGKESALGSGVGVERLALMKSLIYAR* |
Ga0114356_10995945 | 3300008121 | Freshwater, Plankton | TINMKTLCLQTNEMQHCLGKESALGARGGVERVALIKSSIYAREV* |
Ga0114356_11057673 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEIQHCLGEESALGAGGGVERVALIKSLIYAR* |
Ga0114356_11067591 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHNVIVLGKKSALGARGGVDRGALIKV* |
Ga0114356_11138183 | 3300008121 | Freshwater, Plankton | MKTQCLQTNVTQHCLGKESALGAGGGVERVALIKSLIYAREKERA* |
Ga0114356_11206291 | 3300008121 | Freshwater, Plankton | MRTQCLQTKETQHCLEKESALGAGGGGERVALIKSLI* |
Ga0114356_11214041 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYARKKERA* |
Ga0114356_11227941 | 3300008121 | Freshwater, Plankton | MKTKFLQTNEAHHCLGKESALGAGGGVERVALIKSLIYAR* |
Ga0114356_11233523 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGKESSLGAGRGVERVALIKSLIYAR* |
Ga0114356_11256871 | 3300008121 | Freshwater, Plankton | MKTQCLQTNENQHCLGKESALGERGGVERVALIKSLMYERLKERA* |
Ga0114356_11430542 | 3300008121 | Freshwater, Plankton | MKTQCLQTNGTQHCLGKESALGAGRVALIKSLIYARKKERA* |
Ga0114356_11462451 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHYLGKESALEAGGGVERVALIKSLI* |
Ga0114356_11479931 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCFGKESALGAGGGVEIVALIKSLIYARRKERA* |
Ga0114356_11530143 | 3300008121 | Freshwater, Plankton | CLQTNETQHYAIMGKENALEAGGWSRERVALIKS* |
Ga0114356_11566871 | 3300008121 | Freshwater, Plankton | MKTQCSQTNEMQHCLGKESALGARGGEERDALIKSLIYAR* |
Ga0114356_11623032 | 3300008121 | Freshwater, Plankton | MKKQCLQTNEMQHCLGKESAVGAGGGVERVALIKSLIYAR* |
Ga0114356_11650081 | 3300008121 | Freshwater, Plankton | MLWYNFFIKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYAR* |
Ga0114356_11678251 | 3300008121 | Freshwater, Plankton | MKTQCLLANETQHCLGKESVLGAGGGVERVALIKSLIYMR* |
Ga0114356_11705031 | 3300008121 | Freshwater, Plankton | VKTQCLQTNETQHYLGKESALGAGGGVERVALIKSLINAR |
Ga0114356_11736541 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGVRGGVAQVALIKSLIYARWKERA* |
Ga0114356_11786362 | 3300008121 | Freshwater, Plankton | MKTQCLKTKETQHCLGKESALGAIGGGESVALIKSLI* |
Ga0114356_11799701 | 3300008121 | Freshwater, Plankton | MKTQCLQTNVTQHCLGKESALGALGGVERVELMKSLIYVR* |
Ga0114356_11830061 | 3300008121 | Freshwater, Plankton | MLRTTIYMKTQCLQTNETQHCLGKESALGSGGGVEKVALIKSLIYAR* |
Ga0114356_11836481 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGKESALGVGGVVERVALIKSLIYAR* |
Ga0114356_11902671 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYVR* |
Ga0114356_11943091 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLEKESALGAGGGVERVALIKSLIYAR* |
Ga0114356_11965481 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGRESALGVGGGVERVEIIKSLIYAR* |
Ga0114356_12024812 | 3300008121 | Freshwater, Plankton | MKTEYLQRNEMQHCFGKESAREVGGGVERVALIKSLICAR* |
Ga0114356_12024991 | 3300008121 | Freshwater, Plankton | MKIKSFDTTIYMKTYCLQTNETQHCLGKESAREARGGVERVALIKSLIYVREKECA* |
Ga0114356_12156562 | 3300008121 | Freshwater, Plankton | QTNETRHCFGKESALGAGGGVESVALIKSLIYARKKERA* |
Ga0114356_12211291 | 3300008121 | Freshwater, Plankton | MKTQCLQKNETQHCLGKESALGAGGGVERVALIKSFIYAR* |
Ga0114356_12260681 | 3300008121 | Freshwater, Plankton | MKTQFLQTNETQHCLGKESALGARGGVERVALIKSLIYAR* |
Ga0114356_12343171 | 3300008121 | Freshwater, Plankton | IYMKTQCLQTNETQHCFGKESALGARGGVERDALIKSLIYAR* |
Ga0114356_12539351 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGAGEGVERVVLFKSLIYAR* |
Ga0114356_12639181 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCFGKESALGARGGVERDALIKS |
Ga0114356_12644972 | 3300008121 | Freshwater, Plankton | MQTQCLQTNETQHCLGMENALGAGGEVERVALIKSLIYA* |
Ga0114356_12771852 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGLGEGVERVGLIKSLIYAR* |
Ga0114356_12960282 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGKENALGAGGGVDSVALIKSLIYVRKKECA* |
Ga0114356_13526551 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGAGGGVERVALIKSLIYARKKEPA* |
Ga0114356_13595671 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEMQHCLGKESALGARGGLERVALIKSLIYTRWKERA* |
Ga0114356_13722341 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKDSAVVAGGGVERVALIKSLIYTRKKERN* |
Ga0114356_13832141 | 3300008121 | Freshwater, Plankton | MKTQYLQTNEMQHLLGKESALGARGGVERDALIKSLIYAR |
Ga0114356_13969572 | 3300008121 | Freshwater, Plankton | MHCTAIYMKTQCLQTNETQHVSGKESALGAIGGGESLALIKSLI* |
Ga0114356_13996731 | 3300008121 | Freshwater, Plankton | FGTTIYMKTQCLQTNEMQHCLGKESALGVGGGVERVVLIKSLIYAR* |
Ga0114356_14176431 | 3300008121 | Freshwater, Plankton | MKTQCLQANETQHCLGKENALGARGGVEREALIKSLIY |
Ga0114356_14182251 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESASGAIGGVERDALIKSLIYAR* |
Ga0114356_14261062 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLEKESALVSGGGVERVALIKSLIYARRKELA* |
Ga0114356_14280181 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQHCLGKESALGAGGGLEGVVLIKSLIFAR* |
Ga0114356_14625181 | 3300008121 | Freshwater, Plankton | MKTQCLQTNESQHCLGKESALGAGGVQRAALIKSLIYTRQKEHA* |
Ga0114356_14672311 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQYCLGKESALEVGGGVERVALIKSLIYVR* |
Ga0114356_14792671 | 3300008121 | Freshwater, Plankton | MKTQCLHTNETQHCLGKESALGAGEGVERVALIKSLIYARKEDNA* |
Ga0114356_14806271 | 3300008121 | Freshwater, Plankton | MKTLCLQTNEMQHCLGKESALGAGGGVERVALIKSLI* |
Ga0114356_14857781 | 3300008121 | Freshwater, Plankton | NKCFCTTIYMKTHCLQTNKMQHCLGKESALGEGGGVERVVLIKSLIYVR*KECA* |
Ga0114356_14964101 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETPHCLGKESALVAVGGVERVALIKNLIYSR* |
Ga0114356_14964181 | 3300008121 | Freshwater, Plankton | MKIQCLQTNEMKHCFGNESALGAGGGVERVALIKSLIYARKNEHD* |
Ga0114356_15088291 | 3300008121 | Freshwater, Plankton | IYMKTQCLQTNEMQHCLGKESALGAGGGVERVALIKSLIYA* |
Ga0114356_15154842 | 3300008121 | Freshwater, Plankton | MKTQCLQTNETQYCFGKESALGARGGVERDALIKSLIYVR |
Ga0114356_15521821 | 3300008121 | Freshwater, Plankton | IGTSIYIKTQCLQTNETQHCLRKESALGAGGGVERVALIKSLIYAR* |
Ga0114356_15570591 | 3300008121 | Freshwater, Plankton | MKTQCLQTNEIQHYLGKENAFGVGGRVERVALIKSL |
Ga0247722_100524491 | 3300028027 | Deep Subsurface Sediment | MKTQCLQTNETQHCLGQESALGVGGGVERVALIKSLIYAR |
Ga0247722_101565891 | 3300028027 | Deep Subsurface Sediment | MKTQCLQTNETQHYLGKENALGAGGGVKRVALNKSLI |
Ga0247722_102217801 | 3300028027 | Deep Subsurface Sediment | MKTQCLQTNEMQHCLGKESALGAGGGVESLALIKSLIYAR |
Ga0247722_102420221 | 3300028027 | Deep Subsurface Sediment | MRLYTCTAIYMKTQCLQTNEMQHCLGKENALGARGGVERVALIKSLI |
Ga0247722_102656041 | 3300028027 | Deep Subsurface Sediment | MKTQYLQTNEMQHCLGKENALGARGGGESVELIKSLI |
Ga0247722_103216311 | 3300028027 | Deep Subsurface Sediment | MKTQCLQTNEMQHCLGKESALEARGGVEREALIKSLI |
⦗Top⦘ |