NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F088144

Metagenome Family F088144

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F088144
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 68 residues
Representative Sequence MRTHSRRTWPLFTAVAAVAALGLFVLHGVAAGVVLLLALLGVIGAAIYALAGEKVNDGCGGIGGGTSF
Number of Associated Samples 69
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 70.00 %
% of genes near scaffold ends (potentially truncated) 22.02 %
% of genes from short scaffolds (< 2000 bps) 85.32 %
Associated GOLD sequencing projects 67
AlphaFold2 3D model prediction Yes
3D model pTM-score0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (55.046 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil
(33.027 % of family members)
Environment Ontology (ENVO) Unclassified
(36.697 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.294 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.
1soilL1_101424592
2Ga0063454_1015997431
3Ga0062593_1001816602
4Ga0063455_1002569592
5Ga0063455_1006531592
6Ga0062589_1011114221
7Ga0062591_1026925411
8Ga0070676_104201161
9Ga0070683_1016062142
10Ga0070660_1015175811
11Ga0070674_1007846292
12Ga0070684_1018172472
13Ga0070702_1007017882
14Ga0068852_1016920201
15Ga0081455_106701942
16Ga0081538_103616732
17Ga0111539_105726292
18Ga0126307_100007615
19Ga0126307_101443503
20Ga0126307_101466054
21Ga0126307_102265383
22Ga0126307_106517482
23Ga0126307_109582402
24Ga0126313_100778253
25Ga0126313_103555262
26Ga0126313_117469872
27Ga0126305_110290301
28Ga0126304_112326592
29Ga0126315_101961272
30Ga0126315_102986831
31Ga0126315_111261862
32Ga0126315_112529912
33Ga0126309_1000104412
34Ga0126309_101842603
35Ga0126309_105303832
36Ga0126309_107307501
37Ga0126309_111821051
38Ga0126309_112175812
39Ga0126309_112674801
40Ga0126308_101892283
41Ga0126308_103424442
42Ga0126308_106009071
43Ga0126308_109829231
44Ga0126308_111293092
45Ga0126312_105473132
46Ga0126312_108544072
47Ga0126312_112946111
48Ga0126314_104634262
49Ga0126310_101903121
50Ga0126310_108156132
51Ga0126311_110798492
52Ga0126306_101399221
53Ga0126306_101420621
54Ga0137369_106444881
55Ga0150984_1201939151
56Ga0157285_102937851
57Ga0163162_124882752
58Ga0157372_118383871
59Ga0157372_120936142
60Ga0157375_127254541
61Ga0132258_125012403
62Ga0184625_101820832
63Ga0190265_101221563
64Ga0190265_102486192
65Ga0190265_108492002
66Ga0190265_116372572
67Ga0190272_101103803
68Ga0190275_102258731
69Ga0190275_104646102
70Ga0190275_106486372
71Ga0190275_120412692
72Ga0066667_104969621
73Ga0190268_112277502
74Ga0190270_115507461
75Ga0190270_115719321
76Ga0190270_134294312
77Ga0190274_100372985
78Ga0190274_116330762
79Ga0190271_105081602
80Ga0190267_102073992
81Ga0222622_110212852
82Ga0207688_103781472
83Ga0207643_110729852
84Ga0207687_109853291
85Ga0207661_113170702
86Ga0207668_111993331
87Ga0207698_105787861
88Ga0207698_108934131
89Ga0247828_104048522
90Ga0247818_101345392
91Ga0247823_111633061
92Ga0247821_102524213
93Ga0307318_102224132
94Ga0307288_103136002
95Ga0307284_104784061
96Ga0307503_104778431
97Ga0307278_100031983
98Ga0247827_102562072
99Ga0299907_100231356
100Ga0247826_102935103
101Ga0247826_112937762
102Ga0247826_114299281
103Ga0247826_117027662
104Ga0299913_100643983
105Ga0307405_101100742
106Ga0307468_1003698331
107Ga0326721_105963842
108Ga0326721_108068802
109Ga0247830_105327542
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 46.88%    β-sheet: 0.00%    Coil/Unstructured: 53.13%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060MRTHSRRTWPLFTAVAAVAALGLFVLHGVAAGVVLLLALLGVIGAAIYALAGEKVNDGCGGIGGGTSFCytopl.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.66
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
55.0%45.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Serpentine Soil
Soil
Sugarcane Root And Bulk Soil
Grasslands Soil
Hardwood Forest Soil
Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Tabebuia Heterophylla Rhizosphere
Populus Rhizosphere
Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
23.9%33.0%9.2%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
soilL1_1014245923300003267Sugarcane Root And Bulk SoilMRTHSRTTWPLFAVVALVALVGLFILHGAASGVVLFADLLAFLGVGVYALAGEDVNDGCGGIAGGTSF*
Ga0063454_10159974313300004081SoilMRTHSRRIWPPFLPVAVLSILGLFILHGTAAGVVLLVALIGVILAAIYALAGEDVKDGCGGIGGGTSF*
Ga0062593_10018166023300004114SoilMRTHSRKVWPLFLLDAVLAAVALFVLHGVAAGVLTLVVFLAVIATAIYALAGEKVNDGAVGIGGGTSF*
Ga0063455_10025695923300004153SoilMRTHSRRLWPLFLADAMLACLGLFVLDGVAAGVVLFITLLAIIGTGIYGLAGETVHDGLAGIGGGTSY*
Ga0063455_10065315923300004153SoilMRTHSRKLWPLFAADAVLAVLGLVVLHGVVAGVVLLVGLLAVIGTGIYGLAGETVQDGAGGIAGGTNF*
Ga0062589_10111142213300004156SoilKVWPLFLLDAVLAAVALFVLHGVAAGVLTLVVFLAVIATAIYALAGEKVNDGAVGIGGGTSF*
Ga0062591_10269254113300004643SoilMRTHSRKLWPLFLADAVLAVLGLFVLHGVAAGVVLFVTFLTVIGTAIYGLAGEKVQDGAGGIAGGTNF*
Ga0070676_1042011613300005328Miscanthus RhizosphereMRTHSRRVWPLLAADAVPAILAVFVLDGAIAGVLAFVALLGLIGCAIYGLAGEKVQDGAGGIAGGTGY*
Ga0070683_10160621423300005329Corn RhizosphereMRTHSRTTWPLFAAVALVAVLGLFVLHGVAAGVVLFVDLLALIGVSVYALAGEDVNDGSGGIAGGTSF*
Ga0070660_10151758113300005339Corn RhizosphereMRTHSRRVWPLLAVDAVPAILAVFVLDGVIAGVLAFVALLGLLGCAIYGLAGEKVQDGAGGIAGGTGY*
Ga0070674_10078462923300005356Miscanthus RhizosphereWPLLAVDAVPAILAVFVLDGVIAGVLAFVALLGLLGCAIYGLAGEKVQDGAGGIAGGTGY
Ga0070684_10181724723300005535Corn RhizosphereMRTHSRRLWPLFLADAILAGLGLFVLDGVAAGVVLFITLLAVIGTGIYGVAGEDVKDGLGGIGGGTSY*
Ga0070702_10070178823300005615Corn, Switchgrass And Miscanthus RhizosphereMRTHSRKTWPLFLAFAALAAVGAFALHGVAAALVLFAAWLGLLGSAIYALTGEKVNDGAGGIAGGTMY*
Ga0068852_10169202013300005616Corn RhizosphereMRTNSRRTWPLFLLDAVLALLGLFVLHGVAAGVILFATFLAVIGTAIYGLAGEHVNDGCGGIGGGTSF*
Ga0081455_1067019423300005937Tabebuia Heterophylla RhizosphereMRTHSRKTWPLFVAVALLALLGGVVLDGIAAGVVSLLALIGLLVASIYALAGEDVQDGCGGIAGGTGF*
Ga0081538_1036167323300005981Tabebuia Heterophylla RhizosphereMRTHSRKIWPSFLAVALLGVLGVFVLDGVAAGVVCFAALMGLLGASIYALAGEEVRDGCGGIGGGTSF*
Ga0111539_1057262923300009094Populus RhizosphereMRTHSRTTWPLFAAVALVALLGLFVLHGTISGVVLFADLLAFIGVGVYALAGEDVNDGCGGIAGGTSF*
Ga0126307_1000076153300009789Serpentine SoilVRTHSRKTWPPFLAVAVIALLGLFVFDGVAAGVLLFGALLGVIGASIYALAGEDVKDGCGGIGGGTSF*
Ga0126307_1014435033300009789Serpentine SoilMRTHSRRTWPLFLAVAVVALLGVLVDDAAGGVLLFGAFLGVLGTCIYALAGEDVHDGCGGIAGGTGF*
Ga0126307_1014660543300009789Serpentine SoilMHTHSRRLWPFFLADAVLAAVGLFVLDGVASGVVLFGTLLAIIATAIYGLAGEKVNDGAVGIGGGTSY*
Ga0126307_1022653833300009789Serpentine SoilMCEVTDMRTHSRRTWPFFLADAVLAAVGLFVLDGVASGVVLFVVLLAVIGTAIYALKGEKVNDGAVGIGGGTSF*
Ga0126307_1065174823300009789Serpentine SoilMRTHSRRTWPLFTAVAAVAALGLFVLHGVAAGVVLLLALLGVIGAAIYALAGEKVNDGCGGIGGGTSF*
Ga0126307_1095824023300009789Serpentine SoilMRTHSRRTWPLFLADAVLALLGLVALHGIASGVVLLVALIGVILIGIYALAGEKVNDGACGIGGGTSF*
Ga0126313_1007782533300009840Serpentine SoilMRTHSRTTWPLFLGVAVVALVGLFVLDGTAAGVVLFGDFFALIGTSIYALAGENVQDGCGGIGGGTSF*
Ga0126313_1035552623300009840Serpentine SoilMRTHSRRTWPLFVTVAVVAALGLFVLHGVAAGAILLLAMLGVIGVAIYALAGEKVNDGCGGIGGGTSF*
Ga0126313_1174698723300009840Serpentine SoilMRTHSRRTWPLFVVDACLAVLGLFVLHGVVAGVVLLVTLLAVTGSCVYGLAGEKINDGAGPITGGTGF*
Ga0126305_1102903013300010036Serpentine SoilMRTHSRRTWPLFLADAVLALLGLVVLHGILGGVVLLVSMIAVILIAIYALAGETVNDGACGIGGGTSF*
Ga0126304_1123265923300010037Serpentine SoilVCEFTDMRNHSRTLWPLFLADAVLSAVGLFVLHGAVSGVVLFLALLGVIGIGIYGLAGEQVNDGAGGIGGGTSW*
Ga0126315_1019612723300010038Serpentine SoilMRTHSRKLWPLFLADAVLAALGLFVLHGTVAGVVLLITLLAVIGTAIYGLAGERVQDGLGGIAGGTSF*
Ga0126315_1029868313300010038Serpentine SoilRSHAGAFFEEPGMRTHSRRTWPLFTAVAAVAALGLFVLHGVAAGVVLLLALLGVIGAAIYALAGEKVNDGCGGIGGGTSF*
Ga0126315_1112618623300010038Serpentine SoilMRTHSRTTWPLFLGVAVVAVVGLFVLDGTAAGVVLFGDFFALIGTSIYALAGEN
Ga0126315_1125299123300010038Serpentine SoilMRTHSRRSWPGFLATAVLAVLGLFVLDGTVAGVILFVAFLGVIFTAIYALAGETVKDGAGGIGGGTSF*
Ga0126309_10001044123300010039Serpentine SoilMRTHSRRTWPLFLAVAVLSALGLLVFHGIAAGVILLVAFLGLIGTCIYALAGETVNDGLGGIAGGTSF*
Ga0126309_1018426033300010039Serpentine SoilMRTHSRKAWPPFLAVAVLAALGLFVLDGIAAGVVLLAALLGVIGAAIYALAGENDEETTGGIGVRASFWL*
Ga0126309_1053038323300010039Serpentine SoilHSRKTWPPFVAVALLVLLGGVVLDGIAAGVVSLVALIGVLIASVYALAGEDVQDGCGGIGGGTSF*
Ga0126309_1073075013300010039Serpentine SoilMRTHSRKLWPLFLADAVLAMLGLFVLDGVAAGVVLFFTLLAVIGTAIYGLAGETVHDGAGGIA
Ga0126309_1118210513300010039Serpentine SoilGDPMRTHSRKSWPLFLAVVAVAALGIFVLHGVAAGLVLFVAWLGLLGAAIRALAGEKVNDGAGGIAGGTSF*
Ga0126309_1121758123300010039Serpentine SoilMRTHSRKLWPLFLADAVLAALGLFVLDGTVAGVVLFITLLAVIGTAIYGLAGERVQDGLGGIAGGTSF*
Ga0126309_1126748013300010039Serpentine SoilMRTHSRKSWPLFLADAVLAVLGLFVVHGIAAGVILLVALLGLNAACIYALAGENVRDGV
Ga0126308_1018922833300010040Serpentine SoilVRTRSRKTWPPFLAVAVIALLGLFVFDGVAAGVLLFGALLGVIGASIYALAGEDVKDGCGGIGGGTSF*
Ga0126308_1034244423300010040Serpentine SoilMRTHSRRTWPLFTAVAAVAALGLFVLHGVVAGVVLLLALLGVIGAAIYALAGEKVNDGCGGIGGGTSF*
Ga0126308_1060090713300010040Serpentine SoilMRTHSRRTWPFFLADAVLAAVGLFVLDGVASGVVLFVVLLAVIGTAIYALKGEKVNDGAVGIGGGTSF*
Ga0126308_1098292313300010040Serpentine SoilMRTHSRKTWPLFLAVAVVAALGLFVFDGVAAGVLLFGAFLGVIGASIYALAGEDVKDGCGGIGGGTSF*
Ga0126308_1112930923300010040Serpentine SoilMRTHSRRTWPLFLAVAVVAALGIFVVHGAAAGVVLLVDMLALLGTCIYALAGEKVNDGAGGIAGGTSF*
Ga0126312_1054731323300010041Serpentine SoilMRTHSRKSWPLFLAVVAVAALGIFVLHGVAAGLVLFVAWLGLLGAAIRALAGEKVNDGAGGIAGGTSF*
Ga0126312_1085440723300010041Serpentine SoilMRTHSRKTWPPFVAVAVLALLGGVVLHGTAAGVVSFLTLIALLRASIYALAGEDVQDGCGGIGGGTSY*
Ga0126312_1129461113300010041Serpentine SoilMRTHSRPLWPLFAADTVLALLGLFVLHGVAAGVVLFIVLLALIGTGIYGLAGEKVNDGAGGIAGGTNF*
Ga0126314_1046342623300010042Serpentine SoilMRTHSRTTWPLFLGVAVVAVVGLFVLDGTAAGVVLFGDFFALIGTSIYALAGENVQDGCGGIGGGTSF*
Ga0126310_1019031213300010044Serpentine SoilMRTHSRKLWPLFLADAVLACLGLFVLHGVAAGVVLFVTLLAIIGTGIYGLAGETVHDGAGGIGGGTSY*
Ga0126310_1081561323300010044Serpentine SoilMRTHSRRSWPLFLADAVLALLGLVVLHGIASGVVLLVAMIGVILIGIYALAGETVNDGACGIGGGTSF*
Ga0126311_1107984923300010045Serpentine SoilMRTHSRRSWPGFLAAAVLAVLGLFVLDGTAAGVILLVAFLGVIFTAIYALAGETVKDGAGGIGGGTSF*
Ga0126306_1013992213300010166Serpentine SoilMRNHSRTLWPLFLADAVLSAVGLFVLHGAVSGVVLFLALLGVIGIGIYGLAGEQVNDGAGGIGGGTSW*
Ga0126306_1014206213300010166Serpentine SoilSRRLWPLFVADAVLAATGLFVLHGVASGAVLFVTLLAIIGTAIYGLAGETVNDGAVGIGGGTSF*
Ga0137369_1064448813300012355Vadose Zone SoilMRTHSRRTWPLFAAVAVLGLLGLFVLDGTAAGVVLFAALLGLIGTAIYALSGEDVKDGAG
Ga0150984_12019391513300012469Avena Fatua RhizosphereAVAVLVVLGLLVFDGVAAGVVCFIALLGLIGAAINALRGEKVNDGLGGIGGGTSY*
Ga0157285_1029378513300012897SoilVRTHSRRTWPLFLADGVLAVLGLFVFHGTAAGVILFGALLAVIGTAIYGLAGEQVNDGCGGIGGGTSF*
Ga0163162_1248827523300013306Switchgrass RhizosphereMRTHSRTTWPLFAAVALVALLGLFVLHGAISGVVLFADLLAFIGVGVYALAGEDVNDGCGGIAGGTSF*
Ga0157372_1183838713300013307Corn RhizosphereMRTHSRKVWPLFLLDAVLAAVALFVLHGVAAGVLTLVVFLAVIATAIYALAGEKVNDGAVGIGGATSF*
Ga0157372_1209361423300013307Corn RhizosphereMRTHSRKTWPLFLLDAVLALLGLFVLHGVAAGVILFATFLAVIGTAIYGLAGEHVNDGCGGIGGGTSF*
Ga0157375_1272545413300013308Miscanthus RhizosphereMRTNSRRTWPLFLLDAVLALLGLFVLHGIAAGVILLVTLLAVIGTGIYALAGEHVN
Ga0132258_1250124033300015371Arabidopsis RhizosphereMRTHSRRVWPLLAVDAVPAILAVFVLDGVIAGVLAFVALLGLLGCAIYGLAGEKVQDGAGGIAGG
Ga0184625_1018208323300018081Groundwater SedimentMRTHSRKIWPPFLAVALLALLGVFVLDGVAAGVVSFVALIGLLGASIYALAGEKVQDGCGGIGGGTSF
Ga0190265_1012215633300018422SoilMRTHSRRVWPLFAADALTAALAFFVFDGAIAGVLSFVAWLGLLGCVIYSLAGERVQDGCGGVAGGTGF
Ga0190265_1024861923300018422SoilMRTHSRRTWPLFLVVAVLGVLGGVVLDGVAAGVVSFVAMIALLGASIYALAGEKVQDGCGGIAGGVGY
Ga0190265_1084920023300018422SoilVRTHSRKTWPLFLAVAVLVVLGVFVVHGIAAGVLLFGAFIGLLGVCIYALAGEDVQDGCGGIAGGTSF
Ga0190265_1163725723300018422SoilMRTHSRKLWPLFLVSGVVAVLGLFVVDGVAAGVLTLVGVLGVLGAAIYGLAGEDVNDSAGGIGGLGGW
Ga0190272_1011038033300018429SoilMRTHSRKLWPLFLVSGVVAVLGLFVLDGVVAGVLSLVACVGLLGTAIYALAGEDVNDGAGGLGGLGGW
Ga0190275_1022587313300018432SoilMRTHSRKIWPLALGDAVLALLGLFVLHGIAAGVILLGALLAVIGTAIYALAGEPVNDGCGGIGGGTGF
Ga0190275_1046461023300018432SoilMRTHSRRIWPPFLAVAVLSALGLFVLHGTAAGVVLLAALIGVILAGIYGLAGEDVKDGCGGIGGGTSF
Ga0190275_1064863723300018432SoilMRTHSRKLWPLFLLSGVVAVLGLFVVDGVAAGVMTLVGVLGVLGTAIYGLAGEDVKDSAGGIGGLAGW
Ga0190275_1204126923300018432SoilMGRAVCESVGMRTHSRKLWPLWLADAVLATVGLLVLHGVASGVVCFVALLAIIGTGIYGLAGEQVNDGAGGIAGGT
Ga0066667_1049696213300018433Grasslands SoilMRTHSRRLWPLFLADAVLAALGLFVLHGVAAGVVLFVTFLTVIGTAIYGLAGEKVQDGAGGIAGGTNF
Ga0190268_1122775023300018466SoilMRTHSRRIWPPFAAVAVLSALGLFVLHGTAAGVVLLAALIGVILAGIYGLAGEDVKDGCGGIGGGTSF
Ga0190270_1155074613300018469SoilGGAVSEPTAMRTHSRRLWPLWLVDAVLAAVGLLLLHGVASGVVCLVALLATIGTGIYGLAGETVNDGAGGIGGGTSF
Ga0190270_1157193213300018469SoilMRTHSRRVWPLLAADAVPAILAVFVLDGAIAGVLAFVALLGLIGCAIYGLAGEKVQDGAGGIAGGTGY
Ga0190270_1342943123300018469SoilVCESVGMRTHSRKLWPLWLADAVLATVGLLVLHGVASGVVCFVALLAIIGTGIYGLAGEQVNDGAGGIAGGTNY
Ga0190274_1003729853300018476SoilMGRAVCESVGMRTHSRKLWPLWLADAVLATLGLLVLHGVASGVVCFVALLAIIGTGIYGLAGEQVNDGAGGIAGGTNY
Ga0190274_1163307623300018476SoilRRSQRGGPCEVPDMRTHSRRIWPPFLAVAVLSALGLFVLHGTAAGVVLLAALIGVILAGIYGLAGEDVKDGCGGIGGGTSF
Ga0190271_1050816023300018481SoilVCEPAAMRTHSRRLWPLWLVDAVLAAVGLLLLHGVASGVVCLVALLATIGTGIYGLAGETVNDGAGGIGGGTSF
Ga0190267_1020739923300019767SoilMRTHTRRIWPPFAAVAVLSALGLFVLHGTAAGVVLLAALIGVILAGIYGLAGEDVRDGCGGIGGGTSF
Ga0222622_1102128523300022756Groundwater SedimentMRTHSRRIWPPFLAVALLAVLALFVLDGVAAGVVSFVALIALLGAAIYALAGENVRDGCGGIGGGTSF
Ga0207688_1037814723300025901Corn, Switchgrass And Miscanthus RhizosphereMRTHSRRVWPLLAVDAVPAILAVFVLDGVIAGVLAFVALLGLLGCAIYGLAGEKVQDGAGGIAGGTGY
Ga0207643_1107298523300025908Miscanthus RhizosphereMRTNSRRTWPLFLLDAVLALLGLFVLHGIAAGVILLVTLLAVIGTGIYALAGEHVNDGCGGIGGGTSF
Ga0207687_1098532913300025927Miscanthus RhizosphereLAADAVPAILAVFVLDGAIAGVLAFVALLGLIGCAIYGLAGEKVQDGAGGIAGGTGY
Ga0207661_1131707023300025944Corn RhizosphereMRTHSRRLWPLFLADAILAGLGLFVLDGVAAGVVLFITLLAIIGTGIYGVAGEDVKDGLGGIGGGTSY
Ga0207668_1119933313300025972Switchgrass RhizosphereIFLLHRSQRNRSREETVMRTNSRRTWPLFLLDAVLALLGLFVLHGIAAGVILLVTLLAVIGTGIYALAGEHVNDGCGGIGGGTSF
Ga0207698_1057878613300026142Corn RhizosphereMRTHSRTTWPLFAAVALVAVLGLFVLHGVAAGVVLFVDLLALIGVSVYALAGEDVNDGCGGIAGGTSF
Ga0207698_1089341313300026142Corn RhizosphereMRTNSRRTWPLFLLDAVLALLGLFVLHGIAAGVILLVTLLAVIGTGIYALAGEHVNDG
Ga0247828_1040485223300028587SoilMRTHSRTTWPLFAAVALVALLGLFVLHGAISGVVLFADLLAFIGVGVYALAGEDVNDGCGGIAGGTSF
Ga0247818_1013453923300028589SoilMRTHSRTTWPLFAAVALVALLGLFVLHGTISGVVLFADLLAFIGVGVYALAGEDVNDGCGGIAGGTSF
Ga0247823_1116330613300028590SoilHQWSQPRAVREGVDMRTHSRTTWPLFAAVALVALLGLFVLHGAISGVVLLADLLAFIGVGVYALAGEDVNDGCGGIAGGTSF
Ga0247821_1025242133300028596SoilMRTHSRRIWPPFLAVAVLSALGLFVLHGAAAGVVLLVALIGVILAGIYGLAGEDVKDGCGGIGGGTSF
Ga0307318_1022241323300028744SoilMRTHSRKTWPLFLAVGVISVLGLVVVHGIAAGVILFVALIALIGTCIYALAGEQVNDGCGGIGGGTSF
Ga0307288_1031360023300028778SoilMRTHSRRLWPLFLADAVLACLGLFVLDGVAAGVVLFVTLLAIIGTGIYGLAGESVRDGAGGI
Ga0307284_1047840613300028799SoilMRTHSRKTWPLFVADAVLAALGLFFLHGIAAGVVLFVTFLAVIGTAIYGLAGETVQDGAGGIAGGTSF
Ga0307503_1047784313300028802SoilVCESVAMRTHSRRLWPLFLADAVLAAVGVLVLDGVASGVVLLVALLAIIGTAIYGVAGEKVNDGAAGIGGGTSF
Ga0307278_1000319833300028878SoilMRTHSRKTWPPFLAVALLALLGVFALDGVAAGVVSFVALIGLLGASIYALAGEEVRDGCGGIGGGTNF
Ga0247827_1025620723300028889SoilMCEVTGMRTNSRRIWPLFLADAVIAAVGLFVLRGSASGVVLFVAMLGVIGIAIYALAGEKVNDGAAGIGGGTSF
Ga0299907_1002313563300030006SoilMRTHKRKVWPLFLADGVVAVLALFVFDGVAGGVLSMLALLGVLGTSIYALAGEDVNDGAGGIAGGTGW
Ga0247826_1029351033300030336SoilRVTVIFLLHRSQRNRSREETVMRTNSRRTWPLFLLDAVLALLGLFVLHGIAAGVILLVTLLAVIGTGIYALAGEHVNDGCGGIGGGTSF
Ga0247826_1129377623300030336SoilMRTHSRRIWPPFLAVALLAVLALFVLDGVAAGVVSFVALIALLGAAIYALAGEDVRDGCGGIGGGTSF
Ga0247826_1142992813300030336SoilAVREGVGMRTHSRTTWPLFAAVALVALLGLFVLHGAASGVVLFADLLAFLGVGVYALAGEDVNDGCGGIAGGTSF
Ga0247826_1170276623300030336SoilMRTHSRRIWPPFAAVAVLGLLAVFALDGVAAGVVSFVALLGLLGASIYALAGEDVQDGCGGIGGGTSY
Ga0299913_1006439833300031229SoilMRTHKRKVWPLFLADGVVAVLALFVFDGVAGGVLSMVALLGVLGTSIYALAGEDVNDGAGGIAGGTGW
Ga0307405_1011007423300031731RhizosphereVRTHSRKTWPPFLAVAVIALLGLFVFDGVAAGVLLFGALLGVIGASIYALAGEDVKDGCGGIGGGTSF
Ga0307468_10036983313300031740Hardwood Forest SoilVCESVAMRTHSRRLWPLFLADAVLAAVGVLVLDGVASGVVLLVALLAVIGTAIYGVAGEKVNDGAAGIGGGTSF
Ga0326721_1059638423300032080SoilMRTHSRRTWPFIAAACLLGVLGGFVLDGVVAGVVCFVAMIALLLAAIYALAGEDVQDGCGGIGGGVSF
Ga0326721_1080688023300032080SoilVCEPAAMRTHSRRLWPLWLVDAVLAAVGLLLLHGVASGVVCLVALLATIGTGIYGLAGEKVNDGAGGIAGGTSF
Ga0247830_1053275423300033551SoilMRTHSRTTWPLFAAVALVALLGLFVLHGAASGVVLFADLLAFLGVGVYALAGEDVNDGCGGIAGGTSF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.