Metagenome / Metatranscriptome Family F088103

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088103
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	54 residues
Representative Sequence	MIKISWWEEFILGAAVSFLTVLSSKITNPTELAALQAAIAFLQKLLSGGVSLA
Number of Associated Samples	77
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.83 %
% of genes near scaffold ends (potentially truncated)	19.27 %
% of genes from short scaffolds (< 2000 bps)	69.72 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (46.789 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (49.541 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (55.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.44% β-sheet: 0.00% Coil/Unstructured: 55.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
e.8.1.0: automated matches	d4ahca2	4ahc	0.83866
a.29.6.0: automated matches	d1xg2b1	1xg2	0.8358
a.25.2.2: Cobalamin adenosyltransferase	d1noga_	1nog	0.82033
a.7.8.1: GAT domain	d1wrda1	1wrd	0.82011
a.25.1.1: Ferritin	d1vjxa1	1vjx	0.81553

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02709	Glyco_transf_7C	2.75
PF13619	KTSC	2.75
PF06147	DUF968	2.75
PF00196	GerE	1.83
PF13432	TPR_16	1.83
PF07486	Hydrolase_2	1.83
PF01464	SLT	1.83
PF00226	DnaJ	0.92
PF13411	MerR_1	0.92
PF01583	APS_kinase	0.92
PF13428	TPR_14	0.92
PF13384	HTH_23	0.92
PF07866	DUF1653	0.92
PF03796	DnaB_C	0.92
PF01183	Glyco_hydro_25	0.92
PF13692	Glyco_trans_1_4	0.92
PF07505	DUF5131	0.92
PF02086	MethyltransfD12	0.92
PF03237	Terminase_6N	0.92
PF00959	Phage_lysozyme	0.92
PF00145	DNA_methylase	0.92
PF11175	DUF2961	0.92
PF03167	UDG	0.92
PF13578	Methyltransf_24	0.92
PF01794	Ferric_reduct	0.92
PF01037	AsnC_trans_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	1.83
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.92
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	0.92
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	0.92
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.92
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.92
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	0.92
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.92
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	0.92
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.92
COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	Cell wall/membrane/envelope biogenesis [M]	0.92
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	0.92
COG4728	Uncharacterized conserved protein, DUF1653 family	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.80 %
Unclassified	root	N/A	42.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	56.88 %
Unclassified	root	N/A	42.20 %
Viruses	superkingdom	All Organisms → Viruses	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.79 %
Unclassified	root	N/A	42.20 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	10.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → environmental samples	10.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	6.42 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.83 %
Elusimicrobia	phylum	All Organisms → cellular organisms → Bacteria → Elusimicrobia	1.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	10.09 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.67 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.75 %
unclassified Elusimicrobiota	no rank	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota	1.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	10.09 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	1.83 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.83 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	10.09 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.83 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	1.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	10.09 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	1.83 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.20 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	10.09 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	3.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.75 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	1.83 %
Bradyrhizobium cytisi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cytisi	0.92 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.92 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002307\|JGI24890J29729_1021288	Not Available	1537	Open in IMG/M
3300004152\|Ga0062386_100516863	Not Available	970	Open in IMG/M
3300005533\|Ga0070734_10007855	All Organisms → cellular organisms → Bacteria → Proteobacteria	8449	Open in IMG/M
3300005534\|Ga0070735_10212923	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1179	Open in IMG/M
3300005563\|Ga0068855_100499270	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300009518\|Ga0116128_1037195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1584	Open in IMG/M
3300009518\|Ga0116128_1039055	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1538	Open in IMG/M
3300009549\|Ga0116137_1000647	All Organisms → cellular organisms → Bacteria	27270	Open in IMG/M
3300009549\|Ga0116137_1011923	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	3539	Open in IMG/M
3300009615\|Ga0116103_1147120	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300009617\|Ga0116123_1030650	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1630	Open in IMG/M
3300009617\|Ga0116123_1166406	Not Available	565	Open in IMG/M
3300009636\|Ga0116112_1005533	All Organisms → cellular organisms → Bacteria → Proteobacteria	6008	Open in IMG/M
3300009644\|Ga0116121_1320012	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300009646\|Ga0116132_1223265	Not Available	572	Open in IMG/M
3300009759\|Ga0116101_1069258	Not Available	784	Open in IMG/M
3300010341\|Ga0074045_10435701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	847	Open in IMG/M
3300010379\|Ga0136449_100087871	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	6493	Open in IMG/M
3300010379\|Ga0136449_102193004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	806	Open in IMG/M
3300010379\|Ga0136449_104405922	Not Available	519	Open in IMG/M
3300014155\|Ga0181524_10014485	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	6124	Open in IMG/M
3300014162\|Ga0181538_10104915	Not Available	1660	Open in IMG/M
3300014168\|Ga0181534_10456743	Not Available	716	Open in IMG/M
3300014169\|Ga0181531_10589591	Not Available	689	Open in IMG/M
3300014491\|Ga0182014_10259811	Not Available	907	Open in IMG/M
3300014496\|Ga0182011_10752766	Not Available	612	Open in IMG/M
3300014496\|Ga0182011_10786559	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300014657\|Ga0181522_10170300	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300014838\|Ga0182030_10007604	All Organisms → cellular organisms → Bacteria	22582	Open in IMG/M
3300014838\|Ga0182030_10127858	Not Available	3343	Open in IMG/M
3300014838\|Ga0182030_11704770	Not Available	511	Open in IMG/M
3300014839\|Ga0182027_10142856	All Organisms → cellular organisms → Bacteria	2827	Open in IMG/M
3300014839\|Ga0182027_10201375	Not Available	2308	Open in IMG/M
3300014839\|Ga0182027_10251693	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	2020	Open in IMG/M
3300014839\|Ga0182027_10378730	All Organisms → cellular organisms → Bacteria	1579	Open in IMG/M
3300014839\|Ga0182027_10854694	Not Available	946	Open in IMG/M
3300014839\|Ga0182027_11476294	Not Available	670	Open in IMG/M
3300016702\|Ga0181511_1393716	Not Available	536	Open in IMG/M
3300016750\|Ga0181505_10485696	Not Available	555	Open in IMG/M
3300016750\|Ga0181505_11205190	Not Available	665	Open in IMG/M
3300017925\|Ga0187856_1015071	All Organisms → cellular organisms → Bacteria	4187	Open in IMG/M
3300017929\|Ga0187849_1161160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	898	Open in IMG/M
3300017929\|Ga0187849_1200038	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300017929\|Ga0187849_1272306	Not Available	639	Open in IMG/M
3300017931\|Ga0187877_1007360	Not Available	7507	Open in IMG/M
3300017935\|Ga0187848_10192660	Not Available	879	Open in IMG/M
3300017938\|Ga0187854_10109227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1289	Open in IMG/M
3300017940\|Ga0187853_10059889	All Organisms → cellular organisms → Bacteria	1933	Open in IMG/M
3300017941\|Ga0187850_10077290	Not Available	1650	Open in IMG/M
3300017948\|Ga0187847_10124079	Not Available	1416	Open in IMG/M
3300017970\|Ga0187783_10000219	All Organisms → cellular organisms → Bacteria	43684	Open in IMG/M
3300017975\|Ga0187782_10248795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium cytisi	1336	Open in IMG/M
3300017988\|Ga0181520_10152248	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1880	Open in IMG/M
3300017998\|Ga0187870_1156466	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300018002\|Ga0187868_1187366	Not Available	727	Open in IMG/M
3300018004\|Ga0187865_1004534	Not Available	10194	Open in IMG/M
3300018004\|Ga0187865_1289606	Not Available	541	Open in IMG/M
3300018008\|Ga0187888_1101107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1228	Open in IMG/M
3300018015\|Ga0187866_1308194	Not Available	554	Open in IMG/M
3300018020\|Ga0187861_10069734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	1766	Open in IMG/M
3300018021\|Ga0187882_1047420	All Organisms → cellular organisms → Bacteria	2059	Open in IMG/M
3300018022\|Ga0187864_10109949	Not Available	1418	Open in IMG/M
3300018023\|Ga0187889_10421465	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300018057\|Ga0187858_10757479	Not Available	577	Open in IMG/M
3300018057\|Ga0187858_10908614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300019788\|Ga0182028_1252040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300020580\|Ga0210403_10609326	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	881	Open in IMG/M
3300020583\|Ga0210401_10011883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8488	Open in IMG/M
3300020583\|Ga0210401_10221191	All Organisms → Viruses → Predicted Viral	1752	Open in IMG/M
3300021170\|Ga0210400_11410226	Not Available	555	Open in IMG/M
3300021420\|Ga0210394_10003039	All Organisms → cellular organisms → Bacteria	21875	Open in IMG/M
3300021433\|Ga0210391_10000905	All Organisms → cellular organisms → Bacteria	28530	Open in IMG/M
3300021433\|Ga0210391_10009635	All Organisms → cellular organisms → Bacteria	7849	Open in IMG/M
3300022557\|Ga0212123_10002301	All Organisms → cellular organisms → Bacteria	46833	Open in IMG/M
3300022591\|Ga0236341_1004848	Not Available	5848	Open in IMG/M
3300022591\|Ga0236341_1008095	All Organisms → cellular organisms → Bacteria	3993	Open in IMG/M
3300022591\|Ga0236341_1009716	Not Available	3490	Open in IMG/M
3300022591\|Ga0236341_1020477	Not Available	2032	Open in IMG/M
3300022591\|Ga0236341_1026761	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	1674	Open in IMG/M
3300022591\|Ga0236341_1032515	Not Available	1459	Open in IMG/M
3300022591\|Ga0236341_1033975	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300022591\|Ga0236341_1039774	Not Available	1266	Open in IMG/M
3300022592\|Ga0236342_1068264	Not Available	764	Open in IMG/M
3300022592\|Ga0236342_1390990	Not Available	639	Open in IMG/M
3300023311\|Ga0256681_11073749	All Organisms → cellular organisms → Bacteria	3209	Open in IMG/M
3300023311\|Ga0256681_11594919	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	1268	Open in IMG/M
3300023311\|Ga0256681_11786905	Not Available	652	Open in IMG/M
3300023311\|Ga0256681_12365231	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300025439\|Ga0208323_1069334	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300025441\|Ga0208456_1082334	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300025472\|Ga0208692_1095981	Not Available	592	Open in IMG/M
3300025906\|Ga0207699_10667644	Not Available	760	Open in IMG/M
3300025924\|Ga0207694_10002573	All Organisms → cellular organisms → Bacteria	14725	Open in IMG/M
3300027370\|Ga0209010_1023891	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300027826\|Ga0209060_10049942	All Organisms → cellular organisms → Bacteria → Proteobacteria	2020	Open in IMG/M
3300027854\|Ga0209517_10122778	Not Available	1706	Open in IMG/M
3300028558\|Ga0265326_10083605	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	903	Open in IMG/M
3300028653\|Ga0265323_10010423	Not Available	3769	Open in IMG/M
3300031344\|Ga0265316_10454931	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	918	Open in IMG/M
3300031715\|Ga0307476_10034036	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	3406	Open in IMG/M
3300031718\|Ga0307474_10302893	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300031788\|Ga0302319_10916192	Not Available	849	Open in IMG/M
3300032160\|Ga0311301_10051277	All Organisms → cellular organisms → Bacteria → Proteobacteria	9426	Open in IMG/M
3300032805\|Ga0335078_11619277	Not Available	715	Open in IMG/M
3300032895\|Ga0335074_10639839	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300033158\|Ga0335077_11922016	Not Available	552	Open in IMG/M
3300033402\|Ga0326728_10008796	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	24766	Open in IMG/M
3300034091\|Ga0326724_0029515	All Organisms → cellular organisms → Bacteria → Proteobacteria	4443	Open in IMG/M
3300034091\|Ga0326724_0100470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1898	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.41%
Host-Associated	Host-Associated	4.59%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	56.88%
Terrestrial	Environmental → Terrestrial	38.53%
Plants	Host-Associated → Plants	4.59%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	55.96%
Soil	Environmental → Terrestrial → Soil	34.86%
Peat	Environmental → Terrestrial → Peat	3.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.67%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	42.20%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.60%
Lake	Environmental → Aquatic → Freshwater → Lake	12.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Loam	Environmental → Terrestrial → Soil → Loam	1.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	29.36%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	12.84%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	12.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	11.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.34%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	0.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	22.94%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	12.84%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	12.84%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.42%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.67%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	0.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002307	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300009615	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100	Environmental	Open in IMG/M
3300009617	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100	Environmental	Open in IMG/M
3300009636	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009646	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018004	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100	Environmental	Open in IMG/M
3300018008	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018021	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022591	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S2	Environmental	Open in IMG/M
3300022592	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Summer S3	Environmental	Open in IMG/M
3300023311	Combined Assembly of Gp0281739, Gp0281740, Gp0281741	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300025472	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300028558	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG	Host-Associated	Open in IMG/M
3300028653	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG	Host-Associated	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24890J29729_10212882	3300002307	Lentic	MIKLSWWEEFIIGAAVSFLTVLKQKITNPTELAGIEAALTFLQKLMAGTVNVST*
Ga0062386_1005168631	3300004152	Bog Forest Soil	LKLSWWEEFIIGAALSFLTVLQSKLTNPTELAALQAAIVFLQQLMTGSVQVVN*
Ga0070734_100078557	3300005533	Surface Soil	MKLSWWEEFIITSAVTFLTVLENKVTNTTEKAALDAAIQFLKKLLAGGVSLT*
Ga0070735_102129231	3300005534	Surface Soil	WEQVLVGASISLLTLLESKLTNTVEVAALKSAISFLQTLLDGNVAGER*
Ga0068855_1004992702	3300005563	Corn Rhizosphere	MKLSWWEEFVMTAAISFLTMLKSKVTNKVELAAIQSAIDLLQRLLSGTFAMHE*
Ga0116128_10371952	3300009518	Peatland	MLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMAGAVATT*
Ga0116128_10390551	3300009518	Peatland	VLQLSWWEQFIISAALSFLTLIGSKITNPTELAALQAAIAFLQKLLSGTVGINATVK*
Ga0116137_10006473	3300009549	Peatland	MIKISWWEQFILGAAVSFLTVLASKITNATELAALQAAIAFLQRLLGEQVSLT*
Ga0116137_10119233	3300009549	Peatland	MITLSWWEQFIISAGISLLTMLASKVSNQTEKAALEAALAFLQKLLAGNVSIA*
Ga0116103_11471202	3300009615	Peatland	RQTKGRKEKPQMLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMAGAVATT*
Ga0116123_10306503	3300009617	Peatland	MLKLSFWEEFIIGAAISFLTMLQSKIKNPTELAALQAAIEFLQKLLGGNVALS*
Ga0116123_11664062	3300009617	Peatland	MLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMAGSVATT*
Ga0116112_10055337	3300009636	Peatland	MLTLSWWEQFILGAAVSFLMILEPKVKNPTELAALQAAVAFLQKLLGGELSMS*
Ga0116121_13200121	3300009644	Peatland	KGRKEKPQMLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMAGAVATT*
Ga0116132_12232651	3300009646	Peatland	MLQLSWWEQFIVGATISLLTLLQSKLKNATELAALQAAITFLQSLLSGKVAVDS*
Ga0116101_10692582	3300009759	Peatland	MITLSWWEQIIFGSALSFLTILQTKIKNQTELAALQGAITFLQDLLGGNVGAPAA*
Ga0074045_104357012	3300010341	Bog Forest Soil	MITLSWWENFIVGAAISFLTVLQSKITNSVELAGLQAALAFLQKLMNGTVSTVE*
Ga0136449_1000878713	3300010379	Peatlands Soil	MLTLSWWEQFIVGAAISLLTVLESKLTKPAEQAALKAAVVFLQQLLAGGVAIAPAK*
Ga0136449_1021930042	3300010379	Peatlands Soil	MVQLSWWEQFIVSAVVSFLTVLTSKVTNTTEQAGLQSSTAFLQKLLSGQVSQG*
Ga0136449_1044059221	3300010379	Peatlands Soil	MITLSWWEQFIVGAAVSLLTLLQTKITNATEKIAIAQAIEFLQKLLAGGVGGG*
Ga0181524_100144852	3300014155	Bog	MVQLSWWEQFIVSAGVSLLTVLASKITNATELAGLESALAFLQQLLSGQVSQS*
Ga0181538_101049152	3300014162	Bog	MIALSWWEQFIVSAAVSLLTLLASKVTNTVEQAAIQSAIAFLQRLLGGGVSTS*
Ga0181534_104567433	3300014168	Bog	MITLSWWEQIIFGSALSFLTILQTKIKNQTELAALQGAITFLQDLLGGNVGTPAA*
Ga0181531_105895911	3300014169	Bog	MITLSWWEQIIFGSALSFLTILQTKIKNQTELAALQGAITFLQDLLGGNVGT
Ga0182014_102598111	3300014491	Bog	CLKKAARGKEHNMVTLSWWEQFIIGAAISFLTMLLPKIKNPVELAGLQATIAFLQKLLNGNVTLEA*
Ga0182011_107527662	3300014496	Fen	MLKLSLWEQFIIGAAVSFLTVLVSKMTNATELAALQAAIAFLQQLLNGQVSVA*
Ga0182011_107865591	3300014496	Fen	MVTLSWWEQFIIGAAISFLSMLLPKIKNPVELAGLQATIAFLQKLLNGNVTLEA*
Ga0181522_101703004	3300014657	Bog	MITLSWWEQIIFGSALSFLTILQTKIKNQTELAALQGAITFLQNLLGGNVGTPAA*
Ga0182030_1000760440	3300014838	Bog	MLTLSWWEQFIVGASISLLTTLESKLTNTTELAALQAAAAFLQSLLGGKVEVKA*
Ga0182030_101278585	3300014838	Bog	MLKLSFWEQFIIGAAISFLTVLQSQIKNPVELAALQAALAFLQKLLAGTVAVEA*
Ga0182030_117047701	3300014838	Bog	IVGASISLLTTLESKLTNTTEKAALQAAVAFLQSLLGGKVEVKA*
Ga0182027_101428562	3300014839	Fen	MIKLSWWEEFIVGAGISLLTMLQTKIKNPVELAGLQAALTFLQSLLNGNVSIEAPAKS*
Ga0182027_102013753	3300014839	Fen	MIKLSWWEQFIIGAAVSLLTLLASKITNATELAALQAAIAFLQRLLGEQVSLT*
Ga0182027_102516932	3300014839	Fen	MVTLSWWEQFIIGAAISFLTMLLPKIKNPVELAGLQATIAFLQKLLNGNVTLEA*
Ga0182027_103787302	3300014839	Fen	MVKISWWEEFILGAAVSFLTVLASKITNPVELAALQAAIAFLQKLLGGQVALA*
Ga0182027_108546943	3300014839	Fen	FIIGAAVSFLTVLVSKMTNATELAALQAAIAFLQQLLNGQVSVVQPGG*
Ga0182027_114762943	3300014839	Fen	MITLSWWEQFIINAAISLLSVLASKLTNQTEIDALNSAITFLQSLLRGVVAAKP*
Ga0181511_13937161	3300016702	Peatland	MLKLSWWEEFIIGAAISFLTILQSKLTNETELAALQGAIVFLQQLMAGTVAVTGVSTD
Ga0181505_104856962	3300016750	Peatland	MLKLSWWEEFIIGAAISFLTVLQSKLTNPTELAALQAAIGFLQQLMAGSVTVVSGD
Ga0181505_112051902	3300016750	Peatland	MIALSWWEQFIVSAAFSLLTLLASKVTNTVEQAAIQSAIAFLQRLLGGGVSTS
Ga0187856_10150717	3300017925	Peatland	VLQLSWWEQFIISAALSFLTLIGSKITNPTELAALQAAIAFLQKLLSGTVGINATVK
Ga0187849_11611602	3300017929	Peatland	MLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMAGAVATT
Ga0187849_12000381	3300017929	Peatland	MLTLSWWEQFILGAAVSFLMILEPKVKNPTELAALQAAVAFLQKLLGGELSMS
Ga0187849_12723062	3300017929	Peatland	MITLSWWEQFIVGAAVSLLTLLQTKITNPTELAAIQAAIAFLQKLNSG
Ga0187877_10073608	3300017931	Peatland	MLKLSFWEEFIIGAAISFLTMLQSKIKNPTELAALQAAIEFLQKLLGGNVALS
Ga0187848_101926601	3300017935	Peatland	MNLSWWETFIVQAAVSLLTMLESKLTNPTEIAALQAAITFLQKLLSGTVATV
Ga0187854_101092272	3300017938	Peatland	MITMITLSWWEQFIVGAAVSLLTLLQTKITNPTELAAIQAAIAFLQKLNSGLVKTEA
Ga0187853_100598892	3300017940	Peatland	MITLSWWEQFIVGAAVSLLTLLQTKITNPTELAAIQAAIAFLQKLNSGLVKTEA
Ga0187850_100772903	3300017941	Peatland	MGKFDGKEDKMLKLSWWEEFVVGAAVSFLTVLEAKIQNPTELAALQAAVDFLKK
Ga0187847_101240794	3300017948	Peatland	MITLSWWEQIIFGSALSFLTILQTKIKNQTELAALQGAITFLQDLLGGNVGTPAA
Ga0187783_1000021971	3300017970	Tropical Peatland	MIELSSWEQFIVTAAISLLTLLQSKVKNSVELAAIQAVISFLTRLLTGTVPTA
Ga0187782_102487952	3300017975	Tropical Peatland	MIQLSEWEQFIVTAAISFLSFLGTKLKNPIELAALKAALDFLQSLLAGKLGKPTDVQAAD
Ga0181520_101522481	3300017988	Bog	MITLSWWEQFIVGAAISLLTTLESHVKNATELAALKVAVGFLQSLLGGNIAAKE
Ga0187870_11564662	3300017998	Peatland	MISLSWWEQFIIGAAVSLLTLLQTKITNPTELAGIEAAITFLQKLLSAKV
Ga0187868_11873661	3300018002	Peatland	WWEEFIIGAAVSFLTVISSKITNPTEASAVQTTLALLQRLLAGQVSTT
Ga0187865_10045344	3300018004	Peatland	MIKISWWEQFILGAAVSFLTVLASKITNATELAALQAAIAFLQRLLGEQVSLT
Ga0187865_12896062	3300018004	Peatland	MISLSWWEQFIIGAAVSLLTLLQTKITNPTELAAIQAAIAFLQKLNSGLVKTEA
Ga0187888_11011071	3300018008	Peatland	MLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMA
Ga0187866_13081942	3300018015	Peatland	MISLSWWEQFIIGAAVSLLTLLQTKITNPTELAGIEAAITFLQKLLS
Ga0187861_100697344	3300018020	Peatland	MLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKL
Ga0187882_10474201	3300018021	Peatland	MGKFDGKEDKMLKLSWWEEFVVGAAVSFLTVLEAKIQNPTELAALQAAVDFLKKLLGGGV
Ga0187864_101099492	3300018022	Peatland	MIKLSWWEEFIIGAAVSFLTVISSKITNPTEASAVQTTLALLQRLLAGQVSTT
Ga0187889_104214651	3300018023	Peatland	MITLSWWGQFIVGAAVSLLTLLQTKITNPTELAAIQAAIAFLQKLNDGLVKTEA
Ga0187858_107574791	3300018057	Peatland	MITLSWWEEFIVTAAISLLTLLEGKIENATDLAALQAVIAFLKSLLGGNVAVKE
Ga0187858_109086142	3300018057	Peatland	MISLSWWEQFIIGAAVSLLTLLQTKITNPTELAAIQAAIAFLQKLNDGLVKTEA
Ga0182028_12520402	3300019788	Fen	MIKLSWWEEFIVGAGISLLTMLQTKIKNPVELAGLQAALTFLQSLLNGNVSIEAPAKS
Ga0210403_106093262	3300020580	Soil	MIKLSWWEEFIVGAAISLLTMLRSKMTNQAEIAAIEATVAFLQKLLGAGVSLT
Ga0210401_100118836	3300020583	Soil	MITLSWWEQFIVTAALSLLSLLKSKLTNAVELAAITAAIDFLQQLLAGQLGKP
Ga0210401_102211912	3300020583	Soil	MKLSWWEEFIIGAAISFLTVLKTKITNQTELAALEAALAFLNKLMAGAVSVS
Ga0210400_114102261	3300021170	Soil	MVKLGFWEQFIIQSAVSLLTVLASQVSNQTELAALQAGIQFLQKLLAGQVSTT
Ga0210394_1000303916	3300021420	Soil	MEPTMFKPSWWEEFILQAALSFLNVLVGRITNPTEKAALLAAIAFLQRLLAGQMALV
Ga0210391_1000090546	3300021433	Soil	MVKLSFWEQFIVQAAVSLLTVLASQVSNQTELAALQAGIQFLQKLLAGQVSTT
Ga0210391_1000963513	3300021433	Soil	LVKLSVWEEFIIGAAVSFLTLLQSKTKNAEALAGIQAALTFLQSLLNGQVSAT
Ga0212123_100023012	3300022557	Iron-Sulfur Acid Spring	MITLSWWEEFIVGAAVSFLTVLVSKITNPVELAAAQAALDFLNRLLAGQVVYQVKQ
Ga0236341_100484814	3300022591	Freshwater	MLSLSWWEQFIIGAAISLLTVLESKLTNPTEIAALRAAVAFLQQLLGGTVAVKTA
Ga0236341_10080953	3300022591	Freshwater	MITLSWWEQFIINAAISLLSVLASKLTNQTEIEALNGAITFLQSLLRGVVAAKP
Ga0236341_10097164	3300022591	Freshwater	MVKISWWEEFILGAAVSFLTVLASKITNPVELAALQAAIAFLQKLLGGQVALA
Ga0236341_10204772	3300022591	Freshwater	MLKLSWWEQFIIGAAVSFLTVLVSKMTNATELAALQAAIAFLQQLLNGQVSVVQPGG
Ga0236341_10267613	3300022591	Freshwater	MLKLSFWEQFIIGAAISFLTVLQSQITNPAELAALQAALAFLQKLLAGTVALEA
Ga0236341_10325154	3300022591	Freshwater	MVNLSWWEQFIIGAAVSFLTVLGSKITNPVELAALQAASAVLQKLLGGQVAMT
Ga0236341_10339753	3300022591	Freshwater	MVKISWWEEFILGAAVSFLTVLESKITNPVELAALQAAIAFLQKLLGGQVALA
Ga0236341_10397743	3300022591	Freshwater	MIKISWWEEFILGAAVSFLTVLSSKITNPTELAALQAAIAFLQKLLSGGVSLA
Ga0236342_10682641	3300022592	Freshwater	MLSLSWWEQFIIGAAISLLTLLESKLTNPTELAALKAAVAFLQQLLGGTVAAKA
Ga0236342_13909902	3300022592	Freshwater	MLKISWWEQFIIGAAISLLTLLESKLTNPTEIAALQAAVAFLQRLLTGTVAVKE
Ga0256681_110737493	3300023311	Freshwater	MLQLSWWEQFIVTAAISLLTMLQSKLKNPTELAALQAAITFLQSLLSGKVAVEF
Ga0256681_115949191	3300023311	Freshwater	MLKLSFWEQFIIGAAISFLTVLQSQITNPVELAALQAALAFLQKLLAGT
Ga0256681_117869053	3300023311	Freshwater	MIKISWWEEFILGAAVSFLTVLLPKITNPTELAALQAAIAFLQKLLSGGVSLT
Ga0256681_123652312	3300023311	Freshwater	MIKLSWWEQFIIGAAVSFLTLIASKITNATELAALQVAIGFLQRLLGEQVSLT
Ga0208323_10693341	3300025439	Peatland	PQMLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMAGAVATT
Ga0208456_10823341	3300025441	Peatland	TKGRKEKPQMLKLSWWEEFIIGAAISFLTVLSSKITNPTELAALDAALEFLQKLMAGAVATT
Ga0208692_10959811	3300025472	Peatland	MITLSWWEQFIISAGISLLTMLASKVSNQTEKAALEAALAFLQKLLAGNVSIA
Ga0207699_106676443	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MIQLSWWEQFIVGSALSLLTMLESKITNPTEKAAIDTAIIFLRRLMGSG
Ga0207694_100025736	3300025924	Corn Rhizosphere	MKLSWWEEFVMTAAISFLTMLKSKVTNKVELAAIQSAIDLLQRLLSGTFAMHE
Ga0209010_10238912	3300027370	Forest Soil	MITLSWWEQFIVQAAVSLLSVLASKVTNPTEQAAIQAAITFLQRLLGGTVSTV
Ga0209060_100499423	3300027826	Surface Soil	MKLSWWEEFIITSAVTFLTVLENKVTNTTEKAALDAAIQFLKKLLAGGVSLT
Ga0209517_101227784	3300027854	Peatlands Soil	MLTLSWWEQFIVGAAISLLTVLESKLTKPAEQAALKAAVVFLQQLLAGGVAIAPAK
Ga0265326_100836052	3300028558	Rhizosphere	MIKLSWWEEFIIGAAVSFLTMLISKITNPIEQAGLQSALMFLQRLMNGQVTVSYEPPIQT
Ga0265323_100104232	3300028653	Rhizosphere	MIKLSWWEEFIIGAAVSFLTMLISRITNPVEQAGLQSALMFLQRLMNGQVTVSSEPPIQT
Ga0265316_104549312	3300031344	Rhizosphere	MIKLSWWEEFIIGAAVSFLTMLISKITNPVEQAGLQSALMFLQRLMNGQVTVSSEPPIQT
Ga0307476_100340362	3300031715	Hardwood Forest Soil	MKKHRRTHAKEKTSMIKLSWWEEFIVTAALSFLTVLTSKVTNPTELAGLQAAIAFLQKLLSGTVALA
Ga0307474_103028932	3300031718	Hardwood Forest Soil	MIKLSWWEEFIVTAALSFLTVLTSKVTNPTELAGLQAAIAFLQKLLSGTVALA
Ga0302319_109161921	3300031788	Bog	MITLSWWEQFIINAAISLLSVLASKLTNQTEIDALNSAITFLQSLLRGVVAAKP
Ga0311301_100512773	3300032160	Peatlands Soil	MIKLSWWEEFIVTAAISLLTLLASKVTNTVELAAIQSAIAFLQRLVAGNVTVT
Ga0335078_116192771	3300032805	Soil	MVKLSWWEQFIVGAAVSFLSVLQGQVTNPTELAAIQAAQTFLQKLLAGQVSVA
Ga0335074_106398393	3300032895	Soil	MSLSIWEQFIIGAAVSFLTLLQSKLTNQVELDAIAATITF
Ga0335077_119220162	3300033158	Soil	MVKLSWWEQFIIGAAVSFLSVLQSQVTNPTELAAIQAAQTFLQKLLAGQVSVA
Ga0326728_1000879613	3300033402	Peat Soil	MVQLSWWEQFIVSAGVSLLTVLASKITNATELAGLESALAFLQQLLSGQVSQS
Ga0326724_0029515_2982_3146	3300034091	Peat Soil	MITLSWWEQFIIGAAVSLLTLLQTKITNPTELAAIQAAITFLQKLLSGTVPIEA
Ga0326724_0100470_524_685	3300034091	Peat Soil	MITLSWWEQFIVQAGISLLTMLSSKVTNPTEKAALEAALAFLQKLLGGSVSLT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088103

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences