Metagenome Family F088074

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088074
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	75 residues
Representative Sequence	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMVGLRGLEDLARVRKERLGPSSP
Number of Associated Samples	40
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.06 %
% of genes near scaffold ends (potentially truncated)	27.52 %
% of genes from short scaffolds (< 2000 bps)	72.48 %
Associated GOLD sequencing projects	37
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.046 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (35.780 % of family members)
Environment Ontology (ENVO)	Unclassified (35.780 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.450 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.04% β-sheet: 0.00% Coil/Unstructured: 38.96%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13614	AAA_31	3.67
PF01656	CbiA	2.75
PF00106	adh_short	1.83
PF00805	Pentapeptide	1.83
PF01609	DDE_Tnp_1	1.83
PF13560	HTH_31	1.83
PF13676	TIR_2	1.83
PF00723	Glyco_hydro_15	1.83
PF08378	NERD	0.92
PF13419	HAD_2	0.92
PF10604	Polyketide_cyc2	0.92
PF09250	Prim-Pol	0.92
PF01548	DEDD_Tnp_IS110	0.92
PF13380	CoA_binding_2	0.92
PF13563	2_5_RNA_ligase2	0.92
PF00239	Resolvase	0.92
PF06305	LapA_dom	0.92
PF00436	SSB	0.92
PF00877	NLPC_P60	0.92
PF12146	Hydrolase_4	0.92
PF00872	Transposase_mut	0.92
PF14659	Phage_int_SAM_3	0.92
PF13592	HTH_33	0.92
PF12802	MarR_2	0.92
PF02065	Melibiase	0.92
PF13783	DUF4177	0.92
PF00196	GerE	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.83
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	1.83
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.83
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.83
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.83
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.83
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	1.83
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.92
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3345	Alpha-galactosidase	Carbohydrate transport and metabolism [G]	0.92
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.92
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.92
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.92
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.92
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
All Organisms	root	All Organisms	44.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
cellular organisms	root	All Organisms → cellular organisms	44.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25.69 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	1.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17.43 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.75 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.83 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.83 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.92 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.92 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.83 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.83 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.83 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.92 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.92 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.92 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.83 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.83 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.92 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.92 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.83 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.83 %
unclassified Amycolatopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis	0.92 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.05 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.83 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.83 %
Amycolatopsis sp. 195334CR	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. 195334CR	0.92 %
Frankia sp. QA3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. QA3	0.92 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.92 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003373\|JGI25407J50210_10000348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8646	Open in IMG/M
3300003373\|JGI25407J50210_10000887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6442	Open in IMG/M
3300003373\|JGI25407J50210_10013829	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2076	Open in IMG/M
3300003373\|JGI25407J50210_10058322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. QA3	972	Open in IMG/M
3300005562\|Ga0058697_10039383	Not Available	1765	Open in IMG/M
3300005562\|Ga0058697_10488232	Not Available	626	Open in IMG/M
3300005981\|Ga0081538_10001876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	21198	Open in IMG/M
3300005981\|Ga0081538_10007682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9296	Open in IMG/M
3300005981\|Ga0081538_10060415	Not Available	2180	Open in IMG/M
3300005981\|Ga0081538_10099348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1471	Open in IMG/M
3300005981\|Ga0081538_10111071	All Organisms → cellular organisms → Bacteria	1345	Open in IMG/M
3300005981\|Ga0081538_10156947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1019	Open in IMG/M
3300009789\|Ga0126307_10106738	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2222	Open in IMG/M
3300009789\|Ga0126307_10150230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1864	Open in IMG/M
3300009789\|Ga0126307_10161586	Not Available	1795	Open in IMG/M
3300009789\|Ga0126307_10258862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1399	Open in IMG/M
3300009789\|Ga0126307_11097511	Not Available	643	Open in IMG/M
3300009840\|Ga0126313_10006677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6988	Open in IMG/M
3300009840\|Ga0126313_10017002	All Organisms → cellular organisms → Bacteria	4761	Open in IMG/M
3300009840\|Ga0126313_10045493	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3074	Open in IMG/M
3300009840\|Ga0126313_10091516	All Organisms → cellular organisms → Bacteria	2222	Open in IMG/M
3300009840\|Ga0126313_10118391	All Organisms → cellular organisms → Bacteria	1968	Open in IMG/M
3300009840\|Ga0126313_10138623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → unclassified Amycolatopsis → Amycolatopsis sp. 195334CR	1826	Open in IMG/M
3300009840\|Ga0126313_10216900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1474	Open in IMG/M
3300009840\|Ga0126313_10332630	Not Available	1193	Open in IMG/M
3300010037\|Ga0126304_10019624	All Organisms → cellular organisms → Bacteria	3838	Open in IMG/M
3300010038\|Ga0126315_10001587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9046	Open in IMG/M
3300010038\|Ga0126315_10061997	Not Available	2061	Open in IMG/M
3300010038\|Ga0126315_10156103	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1353	Open in IMG/M
3300010038\|Ga0126315_10797234	Not Available	622	Open in IMG/M
3300010038\|Ga0126315_10957172	Not Available	572	Open in IMG/M
3300010038\|Ga0126315_11016696	Not Available	556	Open in IMG/M
3300010038\|Ga0126315_11040007	Not Available	550	Open in IMG/M
3300010039\|Ga0126309_10665691	Not Available	664	Open in IMG/M
3300010040\|Ga0126308_10127508	Not Available	1587	Open in IMG/M
3300010041\|Ga0126312_10027981	Not Available	3760	Open in IMG/M
3300010041\|Ga0126312_10080906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2201	Open in IMG/M
3300010041\|Ga0126312_10092062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2065	Open in IMG/M
3300010041\|Ga0126312_10110495	Not Available	1886	Open in IMG/M
3300010042\|Ga0126314_10311927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1124	Open in IMG/M
3300010042\|Ga0126314_10788728	Not Available	699	Open in IMG/M
3300010042\|Ga0126314_10888232	Not Available	658	Open in IMG/M
3300010042\|Ga0126314_11355135	Not Available	534	Open in IMG/M
3300010044\|Ga0126310_10016441	All Organisms → cellular organisms → Bacteria	3598	Open in IMG/M
3300010044\|Ga0126310_10473202	Not Available	910	Open in IMG/M
3300010045\|Ga0126311_10135541	Not Available	1737	Open in IMG/M
3300010045\|Ga0126311_10201462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1452	Open in IMG/M
3300010166\|Ga0126306_10033763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3475	Open in IMG/M
3300010166\|Ga0126306_10121831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1909	Open in IMG/M
3300010166\|Ga0126306_10578633	Not Available	893	Open in IMG/M
3300010166\|Ga0126306_10775085	Not Available	773	Open in IMG/M
3300018432\|Ga0190275_11274319	Not Available	811	Open in IMG/M
3300018465\|Ga0190269_10935707	Not Available	645	Open in IMG/M
3300018466\|Ga0190268_10948958	Not Available	677	Open in IMG/M
3300018466\|Ga0190268_11789375	Not Available	553	Open in IMG/M
3300018476\|Ga0190274_10719202	Not Available	1045	Open in IMG/M
3300019377\|Ga0190264_12292767	Not Available	506	Open in IMG/M
3300026704\|Ga0208581_101619	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300027718\|Ga0209795_10147311	Not Available	665	Open in IMG/M
3300027750\|Ga0209461_10159253	Not Available	554	Open in IMG/M
3300027809\|Ga0209574_10282701	Not Available	560	Open in IMG/M
3300028705\|Ga0307276_10137856	Not Available	614	Open in IMG/M
3300028878\|Ga0307278_10000317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24718	Open in IMG/M
3300028881\|Ga0307277_10577466	Not Available	505	Open in IMG/M
3300030499\|Ga0268259_10148275	Not Available	556	Open in IMG/M
3300030510\|Ga0268243_1004115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2503	Open in IMG/M
3300031548\|Ga0307408_100022633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4272	Open in IMG/M
3300031548\|Ga0307408_100026482	Not Available	3984	Open in IMG/M
3300031548\|Ga0307408_100438405	Not Available	1130	Open in IMG/M
3300031548\|Ga0307408_100687155	Not Available	918	Open in IMG/M
3300031731\|Ga0307405_10038757	Not Available	2875	Open in IMG/M
3300031731\|Ga0307405_10055463	All Organisms → cellular organisms → Bacteria	2480	Open in IMG/M
3300031731\|Ga0307405_10169162	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1557	Open in IMG/M
3300031731\|Ga0307405_10600221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	898	Open in IMG/M
3300031731\|Ga0307405_10980214	Not Available	720	Open in IMG/M
3300031731\|Ga0307405_11200499	Not Available	656	Open in IMG/M
3300031731\|Ga0307405_11551605	Not Available	583	Open in IMG/M
3300031824\|Ga0307413_10427331	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300031824\|Ga0307413_11974879	Not Available	525	Open in IMG/M
3300031852\|Ga0307410_10003469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7912	Open in IMG/M
3300031852\|Ga0307410_10059649	Not Available	2605	Open in IMG/M
3300031852\|Ga0307410_10103726	All Organisms → cellular organisms → Bacteria	2043	Open in IMG/M
3300031852\|Ga0307410_10168129	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300031852\|Ga0307410_10584649	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300031901\|Ga0307406_10191947	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1496	Open in IMG/M
3300031901\|Ga0307406_10194261	Not Available	1488	Open in IMG/M
3300031901\|Ga0307406_11857055	Not Available	536	Open in IMG/M
3300031911\|Ga0307412_10201302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1512	Open in IMG/M
3300031911\|Ga0307412_10970574	Not Available	749	Open in IMG/M
3300031911\|Ga0307412_11082846	Not Available	712	Open in IMG/M
3300031995\|Ga0307409_101501252	Not Available	701	Open in IMG/M
3300031995\|Ga0307409_101924052	Not Available	621	Open in IMG/M
3300031995\|Ga0307409_101971175	Not Available	613	Open in IMG/M
3300032002\|Ga0307416_100128945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2272	Open in IMG/M
3300032002\|Ga0307416_100293702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1610	Open in IMG/M
3300032002\|Ga0307416_100508512	Not Available	1270	Open in IMG/M
3300032002\|Ga0307416_100862422	Not Available	1004	Open in IMG/M
3300032002\|Ga0307416_101794542	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300032002\|Ga0307416_101815995	Not Available	713	Open in IMG/M
3300032002\|Ga0307416_102708563	Not Available	592	Open in IMG/M
3300032002\|Ga0307416_103818851	Not Available	504	Open in IMG/M
3300032005\|Ga0307411_10582270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	959	Open in IMG/M
3300032126\|Ga0307415_100011009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5152	Open in IMG/M
3300032126\|Ga0307415_100654847	Not Available	942	Open in IMG/M
3300032126\|Ga0307415_101356421	Not Available	675	Open in IMG/M
3300032159\|Ga0268251_10054455	Not Available	1322	Open in IMG/M
3300032159\|Ga0268251_10107243	Not Available	1004	Open in IMG/M
3300034174\|Ga0334932_056139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	675	Open in IMG/M
3300034174\|Ga0334932_086702	Not Available	546	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.29%
Environmental	Environmental	47.71%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.29%
Terrestrial	Environmental → Terrestrial	47.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	47.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.78%
Roots	Host-Associated → Plants → Roots	9.17%
Phylloplane	Host-Associated → Plants → Phylloplane	5.50%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	35.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	9.17%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.50%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.83%
Loam	Environmental → Terrestrial → Soil → Loam	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	35.78%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.50%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	1.83%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	35.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	35.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.26%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.50%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	1.83%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300026704	Grasslands soil microbial communities from Gorham, Kansas, USA that are Nitrogen fertilized - NN606 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25407J50210_1000034810	3300003373	Tabebuia Heterophylla Rhizosphere	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMLGLRGLEDLARVRKERLGPSSP*
JGI25407J50210_100008877	3300003373	Tabebuia Heterophylla Rhizosphere	MAENLDAEQYRQVLRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGHPPMVGFRGLEDLARVRKERLGPSSP*
JGI25407J50210_100138293	3300003373	Tabebuia Heterophylla Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGRSPMVGLRGLEDLARVRKERLGPSSP*
JGI25407J50210_100583221	3300003373	Tabebuia Heterophylla Rhizosphere	MAEKLDAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGRSPMLGFRGLEDLARVRQERLGPSSP*
Ga0058697_100393833	3300005562	Agave	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRALIGESGRSPMLGLRGLEDLARVRKERLGPSSP*
Ga0058697_104882321	3300005562	Agave	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRVGELKVHLQTLIGESGRPPMLGLGGLEDLARVRKERLGPSSP*
Ga0081538_1000187617	3300005981	Tabebuia Heterophylla Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMRGFQGLEDLARVRKERLGPSSP*
Ga0081538_100076825	3300005981	Tabebuia Heterophylla Rhizosphere	MAENLDAEQYRQVLRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLVGESGHPPMVGFRGLEDLARVRKERLGPSSP*
Ga0081538_100604152	3300005981	Tabebuia Heterophylla Rhizosphere	MGENLDAEQYRQALRLVLGELEDLDTAHPVDIGYRLGELKVHLRTLIGESGRPPMVGLRGLEDLARVRTERLGPSSP*
Ga0081538_100993484	3300005981	Tabebuia Heterophylla Rhizosphere	ALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGRSPMVGFRGLEDLARVRKERPGPSSPQRREGHGPGRD*
Ga0081538_101110713	3300005981	Tabebuia Heterophylla Rhizosphere	LRLVLGELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPASP*
Ga0081538_101569471	3300005981	Tabebuia Heterophylla Rhizosphere	MAENLDVEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGRPPMLGLGGLEDLARVRKERLGHPPHTS*
Ga0126307_101067381	3300009789	Serpentine Soil	MAETLDAESYRQALRLILSELEDLDTAHPVDVGYRIGELKAHLRALIGESGQPPMVGLRGLEDLARVRKERLGPSSP*
Ga0126307_101502303	3300009789	Serpentine Soil	MAETLDAEQYRQALRLVLSELKDLDTAHPVDIGYRLGELKVHLRTLIGESGQSPMLGFRGLEDLARVRKERLGPPSS*
Ga0126307_101615862	3300009789	Serpentine Soil	MAENLDAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRALEDLARVRKERLGPSSP*
Ga0126307_102588621	3300009789	Serpentine Soil	MAENLDAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPSSP*
Ga0126307_110975111	3300009789	Serpentine Soil	RLVLSELEDLDTAHPVDIGYRIGELKVHLRNLIGESGQPPMVGLRGLEDLARVRKERLGPSSP*
Ga0126313_100066775	3300009840	Serpentine Soil	MAEDLDAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRALEDLARVRKERLGPSSP*
Ga0126313_100170023	3300009840	Serpentine Soil	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPTVGLRGLEDLARVRKERLGPSSP*
Ga0126313_100454935	3300009840	Serpentine Soil	MAENLDAERYRQALRLVLSELEDLDTAHPVDIGYRVGELKVHLRILIGESGRSPMLGFRGLEDLDRVRKERLGPSSP*
Ga0126313_100915162	3300009840	Serpentine Soil	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQSPMLGLGGLEDLARVREERLGPPSS*
Ga0126313_101183914	3300009840	Serpentine Soil	MAENLDAERYQQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPSSP*
Ga0126313_101386234	3300009840	Serpentine Soil	AETLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLMGESGRPPMLGLRGPEDLARVRKERLGPSSP*
Ga0126313_102169003	3300009840	Serpentine Soil	MAENLNAEHYRQALRLVLGELEDLDTAHPVDIGYRMGELKVHLHTLIGESGHPPMLGLQGLEDLARVRKERLGPSSP*
Ga0126313_103326302	3300009840	Serpentine Soil	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMLGLGGLEDLARVRQERLGPSSP*
Ga0126304_100196242	3300010037	Serpentine Soil	MAETLDAEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQSPMLGFRGLEDLARVRKERLGPPSS*
Ga0126315_1000158714	3300010038	Serpentine Soil	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQSPMLGLGGLEDLARVRKERLGPPSS*
Ga0126315_100619971	3300010038	Serpentine Soil	ALRLILSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRPPMLGLQGLEDLARARKERLGPSSP*
Ga0126315_101561033	3300010038	Serpentine Soil	MAENLNAEQYRQALRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMAGFRGLEDLARVRKERLGPSSP
Ga0126315_107972341	3300010038	Serpentine Soil	RLPAPAREGALMAETLDAEQYRQALRLVLSELEDLDTAHPVDIGYRVGELKVHLRILIGESGRSPMLGFRGLEDLDRVRKERLGPSSP*
Ga0126315_109571721	3300010038	Serpentine Soil	MAETLDAEQYRQALRLILGELEDLDTAHPVDIGYRIGELKAHLRTLIGESGQPPMVGFRGLEDLARVRQERLGPSSP*
Ga0126315_110166961	3300010038	Serpentine Soil	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMVGLRRLEDLARVRQ
Ga0126315_110400072	3300010038	Serpentine Soil	PAQEGALMAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRMGELKVHLHTLIGESGHPPMLGLQGLEDLARVRKERLGPSSP*
Ga0126309_106656911	3300010039	Serpentine Soil	MAENLDAEQYRQALRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPTVGFRGLEDLARVRKERLGPSSP*
Ga0126308_101275081	3300010040	Serpentine Soil	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRAPMVGLGVLEDLARVRQERL
Ga0126312_100279814	3300010041	Serpentine Soil	MAENLDAEQFRQALRLILSELEDLDTAHPVDIGCRMGELKVHLRTLIGESGQPPMVGLRGLEGLARVRKERLGPSSP*
Ga0126312_100809063	3300010041	Serpentine Soil	MAETLDAEQYQQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMVGLRRLEDLARVRQERLRPSSP*
Ga0126312_100920623	3300010041	Serpentine Soil	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRMGELKVHLHTLIGESGHPPMLGLQGLEDLARVRKERLGPSSP*
Ga0126312_101104952	3300010041	Serpentine Soil	MAETLDAEQYRQALRLILGELEDLDTAHPVDIGYRLGELKAHLRTLIGESGRPPMVGLGGLEDLARVRQERLGPSSP*
Ga0126314_103119271	3300010042	Serpentine Soil	MAENLDAEWYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPTVGLRGLEDLARVRKERLGPSSP*
Ga0126314_107887281	3300010042	Serpentine Soil	EKIDAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPSSP*
Ga0126314_108882322	3300010042	Serpentine Soil	IDAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPSSP*
Ga0126314_113551352	3300010042	Serpentine Soil	MAENLNAEQYRQALRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLIGKSGQPPMVGFQGLEDLARVRKERLGPSSP*
Ga0126310_100164417	3300010044	Serpentine Soil	AETLDAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQSPMLGLGGLEDLARVRKERLGPPSS*
Ga0126310_104732021	3300010044	Serpentine Soil	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRAPMVGLGGLEDLARV
Ga0126311_101355411	3300010045	Serpentine Soil	QYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMVGLRRLEDLARVRQERLRPSSP*
Ga0126311_102014622	3300010045	Serpentine Soil	MAENLDAEQYRQALRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPSSP*
Ga0126306_100337634	3300010166	Serpentine Soil	MAESLDAEWYRQALRLILSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPSSS*
Ga0126306_101218313	3300010166	Serpentine Soil	MAENLDAEQYRQALRLILSELEDLDTAHPVDVGYRIGELKAHLRALIGESGQPPMVGLRGLEDLARVRKERLGPSSP*
Ga0126306_105786331	3300010166	Serpentine Soil	MAENLNAEQYRQALRLVLGELEDLDTAHPVDVGYRLGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKER
Ga0126306_107750852	3300010166	Serpentine Soil	MAETLDAEQYRQALRLVLGELEDLDTAHPVDIGYRLGELKVHLRTLIGESGRPPMVGLRGLEDLARVRQGRLGPSSP*
Ga0190275_112743192	3300018432	Soil	MAENLNAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGLRGLEALARVRKQRLGPSSP
Ga0190269_109357071	3300018465	Soil	QYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRPPMLGFRGLEDLDRVRKERLGPSSP
Ga0190268_109489581	3300018466	Soil	MAENLDAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRNLIGESGQPPMVGFRGLEALARVRKERLGPSSP
Ga0190268_117893752	3300018466	Soil	MAENLDAEWYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGRPPMLGLQGLEDLARARKERLGPSSP
Ga0190274_107192022	3300018476	Soil	MAENLDAEWYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRNLIGESGQPPMVGFRGLEDLARVRKERLGPSSP
Ga0190264_122927672	3300019377	Soil	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRPPMLGFRGLEDLDRVRKERLGPSSP
Ga0208581_1016191	3300026704	Soil	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMLGLQGLEDLARARKERLGPSSP
Ga0209795_101473111	3300027718	Agave	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRPPMLGLQGLEDLARARKERLGPSSP
Ga0209461_101592531	3300027750	Agave	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMVGLRGLEDLARVRKERLGPSSP
Ga0209574_102827011	3300027809	Agave	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMLGLGGLQDLARVRKERLGPSSP
Ga0307276_101378561	3300028705	Soil	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRSPMLGFRGLEDLDRVRKERLRPSSP
Ga0307278_1000031716	3300028878	Soil	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRSPMLGFRGLEDLDRVRKERLGPSSP
Ga0307277_105774661	3300028881	Soil	MAENLDTEQYRQALRLVLSELEDLDTTHPVDIGYRIGELKVHLQTLIGESGRPPMLGFRGLEDLARVRNERLGPSSP
Ga0268259_101482751	3300030499	Agave	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKVHLQALIGESGRPPMLGLGGLEDLARVRKERLGPSSP
Ga0268243_10041152	3300030510	Soil	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKVHLGTLIGESGRLPMLGLQGLEDLARARKERLGPSSP
Ga0307408_1000226336	3300031548	Rhizosphere	MADNLDAESYRQALRLVLSELEDLDTAHPVDVGYRIGELKVHLRALIGESGQPPMVGLRGLEDLARVRKERLGPSSP
Ga0307408_1000264823	3300031548	Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRPPMVGLRGLEDLGRVRKERLGPSSP
Ga0307408_1004384052	3300031548	Rhizosphere	MAENLNAEQYRQALRLILGELEDLDTAHPVDIGYRLGELKVHLRTLIGESGPPPMAGFRGLEDLARVRKERLGPSSP
Ga0307408_1006871552	3300031548	Rhizosphere	MAETLDAERYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPSSP
Ga0307405_100387573	3300031731	Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRVGELKVHLRILIGESGRSPMLGLRGLEDLDRVRKERLGPSSP
Ga0307405_100554636	3300031731	Rhizosphere	ENLDAESYRQALRLVLSELEDLDTAHPVDVGYRIGELKVHLRALIGESGQPPMVGLRGLEDLARVRKERLGPSSP
Ga0307405_101691623	3300031731	Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRMGELKVHLHTLIGESGHPPMLGLQGLEDLARVRKERLGPSSP
Ga0307405_106002211	3300031731	Rhizosphere	ALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPTVGLRGLEDLARVRKERLGPSSP
Ga0307405_109802141	3300031731	Rhizosphere	MAETLDAEQYRQALHLVLSELEDLDTAHPVDVGYRLGELKVHLRTLIGESGQPPMLGFRGLEDLARVRKERLGPSSP
Ga0307405_112004991	3300031731	Rhizosphere	MAETLDAEQYRQALRLILNELEDLDTAHSVDIGYRIGELKAHLRTLMGESGRPPMVGLGGLEDLARVRQERLGPSSP
Ga0307405_115516051	3300031731	Rhizosphere	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPPSS
Ga0307413_104273312	3300031824	Rhizosphere	MAETLDAEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQSPMLGFRGLEDLARVRKERPGPPSS
Ga0307413_119748792	3300031824	Rhizosphere	LDAERYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPSSP
Ga0307410_100034694	3300031852	Rhizosphere	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPTVGLRGLEDLARVRKERLGPSSP
Ga0307410_100596493	3300031852	Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRMGELKVHLRTLIGESGRPPMVGLRGLEDLGRVRKERLGPSSP
Ga0307410_101037264	3300031852	Rhizosphere	MAENLDAERYQQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPSSP
Ga0307410_101681291	3300031852	Rhizosphere	ETLDAEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPPSS
Ga0307410_105846491	3300031852	Rhizosphere	MAETLDAEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPPSS
Ga0307406_101919473	3300031901	Rhizosphere	MAETLDAERYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGFRGLEDLDRVRKERLGPSSP
Ga0307406_101942612	3300031901	Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRIGELKMHLRTLIGESGRPPMVGLRGLEDLGRVRKERLGPSSP
Ga0307406_118570552	3300031901	Rhizosphere	NLDAEQYRQALRLVLSELEDLDTAHPVDIGYRMGELKVHLHTLIGESGHPPMLGLQGLEDLARVRKERLGPSSP
Ga0307412_102013021	3300031911	Rhizosphere	MAETLDAEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPPSS
Ga0307412_109705741	3300031911	Rhizosphere	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKAHLRTLIGESGRAPMVGLGGLEDL
Ga0307412_110828462	3300031911	Rhizosphere	RQALRLILSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRPPMVGLRGLEDLGRVRKERLGPSSP
Ga0307409_1015012522	3300031995	Rhizosphere	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRVGELKVHLRILIGESGRSPMLGFRGLEDLDRVRKERLGPSSP
Ga0307409_1019240522	3300031995	Rhizosphere	MAETLDAEQYRQALRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLIGKSGQPPMVGFQGLEDLARVRKERLGPSSP
Ga0307409_1019711751	3300031995	Rhizosphere	LVLRELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPSSP
Ga0307416_1001289453	3300032002	Rhizosphere	MAENLDAEQYRQALRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERPGPSSP
Ga0307416_1002937021	3300032002	Rhizosphere	MADNLDAESYRQALRLVLSELEDLDTAHPVDVGYRIGELKVHLRALIGESGQPPMVGLRGLEDLARVRKERLG
Ga0307416_1005085122	3300032002	Rhizosphere	DAEQYRQALRLILSELEDLDTAHPVDIGYRLGELKAHLRTLIGESGRAPMVGLGGLEDLARVRQERLGPSSP
Ga0307416_1008624221	3300032002	Rhizosphere	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRGLEDLTRVRKERLGPSSP
Ga0307416_1017945421	3300032002	Rhizosphere	LRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLVGESGQPPMVGLRGLEDLARVRKERLGPSSP
Ga0307416_1018159951	3300032002	Rhizosphere	MAENLDAERYRQALRLVLGELEDLDTAHPVDIGYRLGELKVHLRTLIGESGQPPMVGLRGLEDLARVRKERLGPSSP
Ga0307416_1027085632	3300032002	Rhizosphere	MAENLDAEQYWQALRLVLSELEDLDTAHPVDIGYRVGELKVHLRILIGESGRSPMLGLRGLEDLDRVRKERLGPSSP
Ga0307416_1038188511	3300032002	Rhizosphere	MAENLDAEWYRQALHLVLSELEDLDTAHPVDIGYRLGELKVHLRNLIGESGQPPMVGFRGLEDLARVRKERLGPSST
Ga0307411_105822703	3300032005	Rhizosphere	AEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPTVGLRGLEDLARVRKERLGPSSP
Ga0307415_1000110093	3300032126	Rhizosphere	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKTHLRTLIGESGRPPMLGLGGLEDLARVRKERLGPSSP
Ga0307415_1006548471	3300032126	Rhizosphere	MAENLDAEQYRQALRLVLGELEDLDTAHPVDIGYRIGELKVHLRTLIGESGQPPMVGFRGLEDLARVRKERLGPSSP
Ga0307415_1013564211	3300032126	Rhizosphere	MAETLDAEQYRQALRLVLSELEDLDTAHPVDIGYRLGELKVPLRTLIGESGQSPMLGFRGLEDLARVRKERLGSPSS
Ga0268251_100544551	3300032159	Agave	MAENLDAEQYRQALRLVLSELEDLDTAHPVDIGYRVGELKVHLQTLIGESGRPPMLGFRGLEDLARVRKERLGPSSP
Ga0268251_101072433	3300032159	Agave	AENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMVGLRGLEDLARVRQERLGPSSP
Ga0334932_056139_261_494	3300034174	Sub-Biocrust Soil	MAETLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKVHLRTLIGESGRAPMLGLGGLEDLARVRQERLGPSSP
Ga0334932_086702_23_256	3300034174	Sub-Biocrust Soil	MAENLDAEQYRQALRLILSELEDLDTAHPVDIGYRIGELKAHLRTLIGESGRPPMLGLRGLEDLARVRKERLGPSSP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088074

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences