Metagenome / Metatranscriptome Family F088070

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088070
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTAKLRAVLALLFR
Number of Associated Samples	65
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.47 %
% of genes near scaffold ends (potentially truncated)	44.04 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.147 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.862 % of family members)
Environment Ontology (ENVO)	Unclassified (62.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.138 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.77% β-sheet: 8.22% Coil/Unstructured: 63.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02582	DUF155	2.75
PF03457	HA	1.83
PF01068	DNA_ligase_A_M	1.83
PF01590	GAF	1.83
PF01575	MaoC_dehydratas	0.92
PF12697	Abhydrolase_6	0.92
PF01106	NifU	0.92
PF13193	AMP-binding_C	0.92
PF00571	CBS	0.92
PF13439	Glyco_transf_4	0.92
PF09361	Phasin_2	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1723	Mitochondrial translation protein, Rmd1/RMND1/DUF155 family	Translation, ribosomal structure and biogenesis [J]	2.75
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.83
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.83
COG0694	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain	Posttranslational modification, protein turnover, chaperones [O]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
All Organisms	root	All Organisms	23.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
cellular organisms	root	All Organisms → cellular organisms	23.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.15 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	1.83 %
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	1.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04YIWFY	Not Available	505	Open in IMG/M
3300004633\|Ga0066395_10982194	Not Available	514	Open in IMG/M
3300005332\|Ga0066388_104746556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300005363\|Ga0008090_15704673	Not Available	591	Open in IMG/M
3300005713\|Ga0066905_102292528	Not Available	505	Open in IMG/M
3300005764\|Ga0066903_100426144	All Organisms → cellular organisms → Bacteria	2200	Open in IMG/M
3300005764\|Ga0066903_100996125	All Organisms → cellular organisms → Bacteria → Proteobacteria	1531	Open in IMG/M
3300005764\|Ga0066903_102282318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	1045	Open in IMG/M
3300005764\|Ga0066903_102538906	Not Available	992	Open in IMG/M
3300005764\|Ga0066903_103030745	Not Available	910	Open in IMG/M
3300005764\|Ga0066903_103058867	Not Available	906	Open in IMG/M
3300005764\|Ga0066903_104234732	Not Available	767	Open in IMG/M
3300005764\|Ga0066903_104559174	Not Available	738	Open in IMG/M
3300005764\|Ga0066903_108962073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	507	Open in IMG/M
3300009792\|Ga0126374_10302236	Not Available	1073	Open in IMG/M
3300009792\|Ga0126374_10959004	Not Available	667	Open in IMG/M
3300010048\|Ga0126373_10521862	Not Available	1233	Open in IMG/M
3300010048\|Ga0126373_10902989	Not Available	947	Open in IMG/M
3300010358\|Ga0126370_11585520	Not Available	626	Open in IMG/M
3300010359\|Ga0126376_10443240	Not Available	1184	Open in IMG/M
3300010359\|Ga0126376_11631962	Not Available	678	Open in IMG/M
3300010360\|Ga0126372_11345383	Not Available	745	Open in IMG/M
3300010361\|Ga0126378_10927444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	977	Open in IMG/M
3300010361\|Ga0126378_11375603	Not Available	799	Open in IMG/M
3300010361\|Ga0126378_12465863	Not Available	594	Open in IMG/M
3300010361\|Ga0126378_13163953	Not Available	524	Open in IMG/M
3300010376\|Ga0126381_100256894	All Organisms → cellular organisms → Bacteria → Proteobacteria	2371	Open in IMG/M
3300010376\|Ga0126381_100855019	Not Available	1308	Open in IMG/M
3300010376\|Ga0126381_102651522	Not Available	717	Open in IMG/M
3300010398\|Ga0126383_11281635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300010398\|Ga0126383_12706154	Not Available	579	Open in IMG/M
3300012948\|Ga0126375_10820514	Not Available	739	Open in IMG/M
3300012948\|Ga0126375_12034035	Not Available	508	Open in IMG/M
3300012948\|Ga0126375_12038361	Not Available	508	Open in IMG/M
3300012971\|Ga0126369_12353254	Not Available	619	Open in IMG/M
3300016294\|Ga0182041_10533290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	1023	Open in IMG/M
3300016319\|Ga0182033_11613714	Not Available	587	Open in IMG/M
3300016341\|Ga0182035_10806324	Not Available	824	Open in IMG/M
3300016341\|Ga0182035_10989942	Not Available	745	Open in IMG/M
3300016341\|Ga0182035_11444134	Not Available	618	Open in IMG/M
3300016357\|Ga0182032_10228799	Not Available	1433	Open in IMG/M
3300016357\|Ga0182032_10233725	Not Available	1420	Open in IMG/M
3300016357\|Ga0182032_11018730	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300016371\|Ga0182034_10324858	Not Available	1241	Open in IMG/M
3300016371\|Ga0182034_11556864	Not Available	580	Open in IMG/M
3300016404\|Ga0182037_10145955	Not Available	1776	Open in IMG/M
3300016422\|Ga0182039_10790619	Not Available	842	Open in IMG/M
3300021560\|Ga0126371_10809160	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300021560\|Ga0126371_11773669	Not Available	739	Open in IMG/M
3300021560\|Ga0126371_13804025	Not Available	509	Open in IMG/M
3300026959\|Ga0207852_1024127	Not Available	627	Open in IMG/M
3300027000\|Ga0207803_1024457	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300027703\|Ga0207862_1169160	Not Available	652	Open in IMG/M
3300031543\|Ga0318516_10009478	Not Available	4655	Open in IMG/M
3300031545\|Ga0318541_10426915	Not Available	741	Open in IMG/M
3300031545\|Ga0318541_10773018	Not Available	536	Open in IMG/M
3300031573\|Ga0310915_10299367	Not Available	1136	Open in IMG/M
3300031573\|Ga0310915_10964355	Not Available	596	Open in IMG/M
3300031573\|Ga0310915_11167105	Not Available	533	Open in IMG/M
3300031681\|Ga0318572_10173442	Not Available	1253	Open in IMG/M
3300031719\|Ga0306917_10099042	All Organisms → cellular organisms → Bacteria → Proteobacteria	2087	Open in IMG/M
3300031736\|Ga0318501_10299012	Not Available	859	Open in IMG/M
3300031744\|Ga0306918_10100207	All Organisms → cellular organisms → Bacteria	2060	Open in IMG/M
3300031744\|Ga0306918_11514114	Not Available	512	Open in IMG/M
3300031747\|Ga0318502_10612338	Not Available	656	Open in IMG/M
3300031763\|Ga0318537_10305163	Not Available	589	Open in IMG/M
3300031764\|Ga0318535_10182799	Not Available	938	Open in IMG/M
3300031768\|Ga0318509_10179781	Not Available	1173	Open in IMG/M
3300031770\|Ga0318521_10892448	Not Available	543	Open in IMG/M
3300031771\|Ga0318546_10296535	Not Available	1118	Open in IMG/M
3300031792\|Ga0318529_10463369	Not Available	590	Open in IMG/M
3300031793\|Ga0318548_10627771	Not Available	522	Open in IMG/M
3300031821\|Ga0318567_10414793	Not Available	763	Open in IMG/M
3300031845\|Ga0318511_10159507	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	989	Open in IMG/M
3300031845\|Ga0318511_10277085	Not Available	756	Open in IMG/M
3300031879\|Ga0306919_10261229	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300031879\|Ga0306919_11292434	Not Available	552	Open in IMG/M
3300031880\|Ga0318544_10214440	Not Available	743	Open in IMG/M
3300031890\|Ga0306925_10015000	Not Available	7587	Open in IMG/M
3300031890\|Ga0306925_10133687	Not Available	2662	Open in IMG/M
3300031890\|Ga0306925_10332537	Not Available	1632	Open in IMG/M
3300031896\|Ga0318551_10552843	Not Available	662	Open in IMG/M
3300031897\|Ga0318520_10902758	Not Available	556	Open in IMG/M
3300031910\|Ga0306923_11326610	Not Available	762	Open in IMG/M
3300031912\|Ga0306921_10134406	Not Available	2888	Open in IMG/M
3300031912\|Ga0306921_11629016	Not Available	700	Open in IMG/M
3300031941\|Ga0310912_10862222	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300031942\|Ga0310916_10337940	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300031942\|Ga0310916_10720564	Not Available	843	Open in IMG/M
3300031946\|Ga0310910_10395720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1094	Open in IMG/M
3300031947\|Ga0310909_10254547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1467	Open in IMG/M
3300031947\|Ga0310909_10434158	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300031947\|Ga0310909_10656785	Not Available	873	Open in IMG/M
3300032001\|Ga0306922_10274505	All Organisms → cellular organisms → Bacteria	1811	Open in IMG/M
3300032001\|Ga0306922_10531589	Not Available	1251	Open in IMG/M
3300032035\|Ga0310911_10554786	Not Available	666	Open in IMG/M
3300032041\|Ga0318549_10119982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1158	Open in IMG/M
3300032041\|Ga0318549_10541819	Not Available	523	Open in IMG/M
3300032051\|Ga0318532_10086536	Not Available	1100	Open in IMG/M
3300032051\|Ga0318532_10100231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1021	Open in IMG/M
3300032054\|Ga0318570_10292235	Not Available	741	Open in IMG/M
3300032063\|Ga0318504_10111737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1233	Open in IMG/M
3300032065\|Ga0318513_10246636	Not Available	865	Open in IMG/M
3300032076\|Ga0306924_10890097	Not Available	985	Open in IMG/M
3300032076\|Ga0306924_11164821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	836	Open in IMG/M
3300032076\|Ga0306924_11895513	Not Available	618	Open in IMG/M
3300033289\|Ga0310914_10237643	Not Available	1635	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.24%
Loam	Environmental → Terrestrial → Soil → Loam	13.76%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.02%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.76%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.76%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.92%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027000	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 41 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_01204440	2070309004	Green-Waste Compost	VLVQVDENYATLTPFGSLVRVNPAKVSSGTSWRARLRAVLALLFR
Ga0066395_109821941	3300004633	Tropical Forest Soil	VLVQIDENFATLTPFGSLTRSPTKVSRGRSWTATLRAVLALLF
Ga0066388_1047465562	3300005332	Tropical Forest Soil	MRVQIDENWATLTPFGSLIRANPAKLGSAKSWTAKLRAVLALLFRYKA*
Ga0008090_157046732	3300005363	Tropical Rainforest Soil	MDENSATLTPFGSLIRISAAKVSSGKTWTAKLGEILAWLFR*
Ga0066905_1022925281	3300005713	Tropical Forest Soil	VVIQIEENSVTLTPYGSLIRIPGARAIRAKSWTAKLRAVLAFLFR*
Ga0066903_1004261442	3300005764	Tropical Forest Soil	VLVQMDENSATLTPFGSLIRIRAAKVSSGKTWTAKLRAVLALFFR*
Ga0066903_1009961252	3300005764	Tropical Forest Soil	MRETEESVMLVRMEDNSATLTPFGSLIRVNPAKVRSGKSWTAKLRAILALLFR*
Ga0066903_1022823182	3300005764	Tropical Forest Soil	VLVQIDENSATLTPFGSLIRINPGKPGGVAKSWTARLCAVFALLFR*
Ga0066903_1025389062	3300005764	Tropical Forest Soil	MLVQIEENSATLTPFGSVIRINPASRVSNGKSWMAKLRAVLALLFR*
Ga0066903_1030307452	3300005764	Tropical Forest Soil	VLVQMDENSVTLTPFGSVIRINTARLSNGKSWTAKLRAVLALLFR*
Ga0066903_1030588672	3300005764	Tropical Forest Soil	MEDNSATLTPFGSLIRISPAKVSSSGKSWAAKLRAVLALLFG*
Ga0066903_1042347322	3300005764	Tropical Forest Soil	MEDNCATLTPFGSLIRINPAEVSSSKSWAAKLPAVLALLFR*
Ga0066903_1045591741	3300005764	Tropical Forest Soil	VLIQMEENSATLTPFGSLIRVSPAKMSRGKSWTAKLRAMLALLFR*
Ga0066903_1089620731	3300005764	Tropical Forest Soil	VRVQIDENWVTLTPFGSLIRIPPAKLTTAKFWTARLRAVLASLFADKA*
Ga0126374_103022364	3300009792	Tropical Forest Soil	MLVQIDDNSVTLTPFGSLIRISPVKASRGRSWTAKLRAVLALVFRS*
Ga0126374_109590041	3300009792	Tropical Forest Soil	MRGKETRVVLVQMDENFATLTPFGSLSRVNQAKLSNGKSWTAKLRAVLALLFR*
Ga0126373_105218621	3300010048	Tropical Forest Soil	MLVQIDENSVTLTPFGSLIRANPAKLGSAKSWTAKLRAVLALLFRYKA*
Ga0126373_109029892	3300010048	Tropical Forest Soil	MDENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALLFR*
Ga0126370_115855201	3300010358	Tropical Forest Soil	MLVQIDENSVTLTPFGSLIRISPVRASRGRSWTAKLRAVLALVLFPEWWSG*
Ga0126376_104432404	3300010359	Tropical Forest Soil	MLIQIEENSATLTPFGSLIRISPVKASRGRFWTAKLRAVLALAFRS*
Ga0126376_116319622	3300010359	Tropical Forest Soil	VLIQIEENSATLTPFGSLIRINPVKVSGGKSWTAKLRAILALLFR*
Ga0126372_113453831	3300010360	Tropical Forest Soil	QIDENFATLTPFGSLTRISPTKVSRGRSWTATLRAVLALLFR*
Ga0126378_109274443	3300010361	Tropical Forest Soil	GAKESGVVLIQIDENSATLTPFGSLIRINPVKVSSGRSWTAKLRAVLALLFR*
Ga0126378_113756031	3300010361	Tropical Forest Soil	MRVQIDENWATLTPFGSLIRANPAKLGSAKSWTAKLRAVLAFLFR*
Ga0126378_124658631	3300010361	Tropical Forest Soil	ENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALLFR*
Ga0126378_131639532	3300010361	Tropical Forest Soil	MDENSATLTPFGSLIRVSAAKVSSGKTWTAKLRAVLALFFR*
Ga0126381_1002568944	3300010376	Tropical Forest Soil	MLVQIEENSATLTPFGSLIRISPVKVSRGGSWTARLRAVLAFLFR*
Ga0126381_1008550194	3300010376	Tropical Forest Soil	VQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS*
Ga0126381_1026515221	3300010376	Tropical Forest Soil	MLVQIDENSATLTPFGSLIRISPVKASRGRSWTAKLRAVLALVFRW*
Ga0126383_112816352	3300010398	Tropical Forest Soil	MLVQIDENFVTLTPFGSLIRISPVKASRGRFWAAKLRAVLALLFRS*
Ga0126383_127061541	3300010398	Tropical Forest Soil	MDENSATLTPFGSLIRISAAKVNSGKTWTAKLRAVFALLFR*
Ga0126375_108205141	3300012948	Tropical Forest Soil	VLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS*
Ga0126375_120340351	3300012948	Tropical Forest Soil	VLVQIDENYATLTPFGSLVRINPAKVSSGKSWRARLRTVLALLFR*
Ga0126375_120383611	3300012948	Tropical Forest Soil	RAVLIQIEENSATLTPFGSLIRINPVKVNSGKSWTAKLRAILALLFS*
Ga0126369_123532543	3300012971	Tropical Forest Soil	VTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS*
Ga0182041_105332901	3300016294	Soil	VLVQTDENYAILTPFGSLIRISPVKVSRGRSWTARL
Ga0182033_116137142	3300016319	Soil	MLVQIDENSATLTPFGSLIRISSVKASRGRFWTAKLRAVLALVFRS
Ga0182035_100721381	3300016341	Soil	IDENSVTLTPFGSLIRTAPAKPSGAESWTAKLRRMFALLFS
Ga0182035_108063242	3300016341	Soil	VQIDENSATLTPFGSLIRIGPVKMSRGRSWTAKLRAVLALLFR
Ga0182035_109899421	3300016341	Soil	ENSATLTPFGSLIRVTPAKSRSAKSWTAKLGKILAWLFR
Ga0182035_114441341	3300016341	Soil	VLIQVEENAVTLTPFSSMRITPAKRNGARSSWTAKLRAVLALLFR
Ga0182032_102287992	3300016357	Soil	MLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAALALVFRW
Ga0182032_102337251	3300016357	Soil	SQELGTKKVSVMLVRMEDNSATLTPFGSVIRISPAKVANSSRSWTAKLRAVLALLFH
Ga0182032_110187301	3300016357	Soil	MLVHIDENSVTLTPFGSLIRISPVGASRGRSWTAKLRAVLA
Ga0182034_103248582	3300016371	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAVLAFLFR
Ga0182034_115568642	3300016371	Soil	MLVQIDENSVTLTPFGSLIRISPVKPSRGRFWTAKLRAVLALVFRS
Ga0182037_101459554	3300016404	Soil	PEGIPAIARYLRVMLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLRAVLALVFRS
Ga0182039_107906191	3300016422	Soil	RVMLVQIEENSATLTPFGSVIRINPASGVSNGKSWMAQLRAVLALLFR
Ga0126371_108091602	3300021560	Tropical Forest Soil	MRVQIDENWATLTPFGSLIRANPAKLGSAKSWTAKLRAVLALHFRYKA
Ga0126371_117736691	3300021560	Tropical Forest Soil	MDENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALLFR
Ga0126371_138040252	3300021560	Tropical Forest Soil	VLVQTDENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALL
Ga0207852_10241271	3300026959	Tropical Forest Soil	NSVILTPLGSLIRITPAKPSGAKSWTAKLRAVFALLFR
Ga0207803_10244571	3300027000	Tropical Forest Soil	VILTPLGSLIRISPAKVSSGKSWTAKLRAVFALLFR
Ga0207862_11691601	3300027703	Tropical Forest Soil	VEENSVILTPLGSLIRITTHTKQSDAKSWTAKLRAVLALLFR
Ga0318516_100094786	3300031543	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAVLAFVFR
Ga0318541_104269151	3300031545	Soil	VLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318541_107730182	3300031545	Soil	MLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0310915_102993673	3300031573	Soil	ALARYLRVMLVQIHENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0310915_109643552	3300031573	Soil	MLVQIDENSVTLTPFGSLVRIGPVKASRGRSWTAKLRAVLALVFRW
Ga0310915_111671051	3300031573	Soil	SVTLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318572_101734422	3300031681	Soil	MLVQIDENSVTLTRFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306917_100990425	3300031719	Soil	DENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318501_102990121	3300031736	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAVLA
Ga0306918_101002071	3300031744	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAKLRAVLALVFRS
Ga0306918_115141141	3300031744	Soil	MLVQIDENSVTLTPFGSLIRFSPVKASRGRSWTAKLRTVLALVFRW
Ga0318502_106123382	3300031747	Soil	MLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318537_103051631	3300031763	Soil	YLRVMLVQIDENSVTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS
Ga0318535_101827992	3300031764	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAKLRAVLALVFRW
Ga0318509_101797813	3300031768	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLR
Ga0318521_108924481	3300031770	Soil	MLVQIEENSATLTPFGSVIRINPASRVSNGKSWMAKLRAVLALLFR
Ga0318546_102965353	3300031771	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAV
Ga0318529_104633691	3300031792	Soil	DVKFGGGVVLIRIDENSATLTPFGSLIRITPAKSRSTKSWTAKLGKIFAWLFR
Ga0318548_106277712	3300031793	Soil	MLVQIDENSATLTPFGSLIRNSPVKASRGRFWTAKLRAVLALVFRS
Ga0318567_104147932	3300031821	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRA
Ga0318511_101595072	3300031845	Soil	KQHTGRGNRVLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318511_102770852	3300031845	Soil	LTPFGSLIRISPVGASRGRFWTAKLRAVLALVFRS
Ga0306919_102612293	3300031879	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAK
Ga0306919_112924342	3300031879	Soil	TLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318544_102144403	3300031880	Soil	LTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306925_100150007	3300031890	Soil	MLVQIEENSATLTPFGSVIRINPASGVSNGKSWMAQLRAVLALLFR
Ga0306925_101336873	3300031890	Soil	MLVQIEENSATLTPFGSLIRISPVKVSRGRSWTAKLRAVLALLFR
Ga0306925_103325371	3300031890	Soil	MLVQIDENSVTLTPFGSLIRISPVKASRVRSWTAKLRAVLALVFRS
Ga0318551_105528431	3300031896	Soil	MLVQIEENSATLTPFGSLIRISPVKASRGRSWTAKLRAVLALLFR
Ga0318520_109027581	3300031897	Soil	LTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0306923_113266101	3300031910	Soil	VLVQIDENSATLTPFGSLIRIGPVKMSRGRSWTAKLRAVLALLFR
Ga0306921_101344062	3300031912	Soil	MFVQIEENSVTLTPFGSLIRISSAKSRSAKSWTAKLGKILAWLFR
Ga0306921_116290161	3300031912	Soil	IDENSVTLTPFGSLIRNSPVKASRGRSWTAKLPAVLALVFRS
Ga0310912_108622222	3300031941	Soil	MLVHIDENSVTLTPFGSLIRISPVGASRGRSWTAKLRAVLALVLFPEWWAG
Ga0310916_103379403	3300031942	Soil	MLVQIDENSVTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS
Ga0310916_107205642	3300031942	Soil	VLVQIDENSVTLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0310910_103957201	3300031946	Soil	VTLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0310909_102545475	3300031947	Soil	MLVQIDENSVTLTPFGSLIRNSPVKASRGRSWTAKLPAVLALVFR
Ga0310909_104341583	3300031947	Soil	MLVQIDENSVTLTPFGSLIRISPVKASRGRFWIAKL
Ga0310909_106567853	3300031947	Soil	RHTGRGNRVMLVQIDENSVTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS
Ga0306922_102745054	3300032001	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAKLRAVLALVF
Ga0306922_105315891	3300032001	Soil	MLVQIDENSVTLTPFGSLVRIGPVKASRGRSWTAKLRAVLALLFRW
Ga0310911_105547861	3300032035	Soil	VLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKPRAVLALVFRS
Ga0318549_101199821	3300032041	Soil	MLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLR
Ga0318549_105418191	3300032041	Soil	MLVQIDENSVTLTPFGSLIRFSPVKASRGRSWTAKLRAVLALVFRW
Ga0318532_100865362	3300032051	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTAKLRAVLALLFR
Ga0318532_101002313	3300032051	Soil	MLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLRAVLALVFR
Ga0318570_102922352	3300032054	Soil	MLVQIDENSATLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0318504_101117374	3300032063	Soil	MLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLRAVLA
Ga0318513_102466361	3300032065	Soil	YLRVMLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306924_108900973	3300032076	Soil	LRVMLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306924_111648211	3300032076	Soil	VLVQTDENYTILTPFGSLIRISPVKVSRGRSWTARL
Ga0306924_118955132	3300032076	Soil	MLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVL
Ga0306920_1023812271	3300032261	Soil	IQIDENSVTLTPFGSLIRTAPAKPSGAESWTAKLRRMFALLFS
Ga0310914_102376434	3300033289	Soil	MLVQIDGNSVTLTPFGSLIRISPVKASRGRSWTAKLRAVLALVLFPEWWSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088070

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences