Metagenome / Metatranscriptome Family F088070

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088070
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTAKLRAVLALLFR
Number of Associated Samples	65
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.47 %
% of genes near scaffold ends (potentially truncated)	44.04 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (76.147 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.862 % of family members)
Environment Ontology (ENVO)	Unclassified (62.385 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.138 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1prs_01204440 2Ga0066395_109821941 3Ga0066388_1047465562 4Ga0008090_157046732 5Ga0066905_1022925281 6Ga0066903_1004261442 7Ga0066903_1009961252 8Ga0066903_1022823182 9Ga0066903_1025389062 10Ga0066903_1030307452 11Ga0066903_1030588672 12Ga0066903_1042347322 13Ga0066903_1045591741 14Ga0066903_1089620731 15Ga0126374_103022364 16Ga0126374_109590041 17Ga0126373_105218621 18Ga0126373_109029892 19Ga0126370_115855201 20Ga0126376_104432404 21Ga0126376_116319622 22Ga0126372_113453831 23Ga0126378_109274443 24Ga0126378_113756031 25Ga0126378_124658631 26Ga0126378_131639532 27Ga0126381_1002568944 28Ga0126381_1008550194 29Ga0126381_1026515221 30Ga0126383_112816352 31Ga0126383_127061541 32Ga0126375_108205141 33Ga0126375_120340351 34Ga0126375_120383611 35Ga0126369_123532543 36Ga0182041_105332901 37Ga0182033_116137142 38Ga0182035_100721381 39Ga0182035_108063242 40Ga0182035_109899421 41Ga0182035_114441341 42Ga0182032_102287992 43Ga0182032_102337251 44Ga0182032_110187301 45Ga0182034_103248582 46Ga0182034_115568642 47Ga0182037_101459554 48Ga0182039_107906191 49Ga0126371_108091602 50Ga0126371_117736691 51Ga0126371_138040252 52Ga0207852_10241271 53Ga0207803_10244571 54Ga0207862_11691601 55Ga0318516_100094786 56Ga0318541_104269151 57Ga0318541_107730182 58Ga0310915_102993673 59Ga0310915_109643552 60Ga0310915_111671051 61Ga0318572_101734422 62Ga0306917_100990425 63Ga0318501_102990121 64Ga0306918_101002071 65Ga0306918_115141141 66Ga0318502_106123382 67Ga0318537_103051631 68Ga0318535_101827992 69Ga0318509_101797813 70Ga0318521_108924481 71Ga0318546_102965353 72Ga0318529_104633691 73Ga0318548_106277712 74Ga0318567_104147932 75Ga0318511_101595072 76Ga0318511_102770852 77Ga0306919_102612293 78Ga0306919_112924342 79Ga0318544_102144403 80Ga0306925_100150007 81Ga0306925_101336873 82Ga0306925_103325371 83Ga0318551_105528431 84Ga0318520_109027581 85Ga0306923_113266101 86Ga0306921_101344062 87Ga0306921_116290161 88Ga0310912_108622222 89Ga0310916_103379403 90Ga0310916_107205642 91Ga0310910_103957201 92Ga0310909_102545475 93Ga0310909_104341583 94Ga0310909_106567853 95Ga0306922_102745054 96Ga0306922_105315891 97Ga0310911_105547861 98Ga0318549_101199821 99Ga0318549_105418191 100Ga0318532_100865362 101Ga0318532_101002313 102Ga0318570_102922352 103Ga0318504_101117374 104Ga0318513_102466361 105Ga0306924_108900973 106Ga0306924_111648211 107Ga0306924_118955132 108Ga0306920_1023812271 109Ga0310914_102376434
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1prs_01204440 2Ga0066388_1047465562 3Ga0008090_157046732 4Ga0066905_1022925281 5Ga0066903_1009961252 6Ga0066903_1022823182 7Ga0066903_1025389062 8Ga0066903_1030588672 9Ga0066903_1045591741 10Ga0126374_103022364 11Ga0126374_109590041 12Ga0126372_113453831 13Ga0126378_109274443 14Ga0182041_105332901 15Ga0182035_100721381 16Ga0182035_114441341 17Ga0182032_102337251 18Ga0182037_101459554 19Ga0207852_10241271 20Ga0318529_104633691 21Ga0318511_102770852 22Ga0306919_102612293 23Ga0306921_101344062
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44. 1Ga0318532_100865362 2prs_01204440 3Ga0066395_109821941 4Ga0008090_157046732 5Ga0066905_1022925281 6Ga0066903_1004261442 7Ga0066903_1009961252 8Ga0066903_1022823182 9Ga0066903_1025389062 10Ga0066903_1030307452 11Ga0066903_1030588672 12Ga0066903_1042347322 13Ga0066903_1045591741 14Ga0066903_1089620731 15Ga0126374_109590041 16Ga0126376_104432404 17Ga0126376_116319622 18Ga0126383_112816352 19Ga0182035_114441341 20Ga0182032_102337251 21Ga0126371_108091602 22Ga0207852_10241271 23Ga0207803_10244571 24Ga0207862_11691601 25Ga0318541_104269151 26Ga0310915_102993673 27Ga0318529_104633691 28Ga0306921_101344062 29Ga0306924_111648211 30Ga0306920_1023812271 31Ga0310914_102376434
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.77% β-sheet: 8.22% Coil/Unstructured: 63.01%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF02582	DUF155	2.75
PF03457	HA	1.83
PF01068	DNA_ligase_A_M	1.83
PF01590	GAF	1.83
PF01575	MaoC_dehydratas	0.92
PF12697	Abhydrolase_6	0.92
PF01106	NifU	0.92
PF13193	AMP-binding_C	0.92
PF00571	CBS	0.92
PF13439	Glyco_transf_4	0.92

Showing 1 to 10 of 11 entries

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COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1723	Mitochondrial translation protein, Rmd1/RMND1/DUF155 family	Translation, ribosomal structure and biogenesis [J]	2.75
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.83
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.83
COG0694	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain	Posttranslational modification, protein turnover, chaperones [O]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	23.85 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	23.85 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.85 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.68 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.93 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.67 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.83 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.83 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.83 %
Unclassified	root	N/A	76.15 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium macuxiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	1.83 %
Microvirga vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga vignae	1.83 %
Unclassified	root	N/A	76.15 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04YIWFY	Not Available	505	Open in IMG/M
3300004633\|Ga0066395_10982194	Not Available	514	Open in IMG/M
3300005332\|Ga0066388_104746556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300005363\|Ga0008090_15704673	Not Available	591	Open in IMG/M
3300005713\|Ga0066905_102292528	Not Available	505	Open in IMG/M
3300005764\|Ga0066903_100426144	All Organisms → cellular organisms → Bacteria	2200	Open in IMG/M
3300005764\|Ga0066903_100996125	All Organisms → cellular organisms → Bacteria → Proteobacteria	1531	Open in IMG/M
3300005764\|Ga0066903_102282318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium macuxiense	1045	Open in IMG/M
3300005764\|Ga0066903_102538906	Not Available	992	Open in IMG/M
3300005764\|Ga0066903_103030745	Not Available	910	Open in IMG/M

Showing 1 to 10 of 107 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	13.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	86.24%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	62.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.76%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.02%

Habitat	Taxonomy	Distribution
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	13.76%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M

Showing 1 to 10 of 65 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_01204440	2070309004	Green-Waste Compost	VLVQVDENYATLTPFGSLVRVNPAKVSSGTSWRARLRAVLALLFR
Ga0066395_109821941	3300004633	Tropical Forest Soil	VLVQIDENFATLTPFGSLTRSPTKVSRGRSWTATLRAVLALLF
Ga0066388_1047465562	3300005332	Tropical Forest Soil	MRVQIDENWATLTPFGSLIRANPAKLGSAKSWTAKLRAVLALLFRYKA*
Ga0008090_157046732	3300005363	Tropical Rainforest Soil	MDENSATLTPFGSLIRISAAKVSSGKTWTAKLGEILAWLFR*
Ga0066905_1022925281	3300005713	Tropical Forest Soil	VVIQIEENSVTLTPYGSLIRIPGARAIRAKSWTAKLRAVLAFLFR*
Ga0066903_1004261442	3300005764	Tropical Forest Soil	VLVQMDENSATLTPFGSLIRIRAAKVSSGKTWTAKLRAVLALFFR*
Ga0066903_1009961252	3300005764	Tropical Forest Soil	MRETEESVMLVRMEDNSATLTPFGSLIRVNPAKVRSGKSWTAKLRAILALLFR*
Ga0066903_1022823182	3300005764	Tropical Forest Soil	VLVQIDENSATLTPFGSLIRINPGKPGGVAKSWTARLCAVFALLFR*
Ga0066903_1025389062	3300005764	Tropical Forest Soil	MLVQIEENSATLTPFGSVIRINPASRVSNGKSWMAKLRAVLALLFR*
Ga0066903_1030307452	3300005764	Tropical Forest Soil	VLVQMDENSVTLTPFGSVIRINTARLSNGKSWTAKLRAVLALLFR*
Ga0066903_1030588672	3300005764	Tropical Forest Soil	MEDNSATLTPFGSLIRISPAKVSSSGKSWAAKLRAVLALLFG*
Ga0066903_1042347322	3300005764	Tropical Forest Soil	MEDNCATLTPFGSLIRINPAEVSSSKSWAAKLPAVLALLFR*
Ga0066903_1045591741	3300005764	Tropical Forest Soil	VLIQMEENSATLTPFGSLIRVSPAKMSRGKSWTAKLRAMLALLFR*
Ga0066903_1089620731	3300005764	Tropical Forest Soil	VRVQIDENWVTLTPFGSLIRIPPAKLTTAKFWTARLRAVLASLFADKA*
Ga0126374_103022364	3300009792	Tropical Forest Soil	MLVQIDDNSVTLTPFGSLIRISPVKASRGRSWTAKLRAVLALVFRS*
Ga0126374_109590041	3300009792	Tropical Forest Soil	MRGKETRVVLVQMDENFATLTPFGSLSRVNQAKLSNGKSWTAKLRAVLALLFR*
Ga0126373_105218621	3300010048	Tropical Forest Soil	MLVQIDENSVTLTPFGSLIRANPAKLGSAKSWTAKLRAVLALLFRYKA*
Ga0126373_109029892	3300010048	Tropical Forest Soil	MDENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALLFR*
Ga0126370_115855201	3300010358	Tropical Forest Soil	MLVQIDENSVTLTPFGSLIRISPVRASRGRSWTAKLRAVLALVLFPEWWSG*
Ga0126376_104432404	3300010359	Tropical Forest Soil	MLIQIEENSATLTPFGSLIRISPVKASRGRFWTAKLRAVLALAFRS*
Ga0126376_116319622	3300010359	Tropical Forest Soil	VLIQIEENSATLTPFGSLIRINPVKVSGGKSWTAKLRAILALLFR*
Ga0126372_113453831	3300010360	Tropical Forest Soil	QIDENFATLTPFGSLTRISPTKVSRGRSWTATLRAVLALLFR*
Ga0126378_109274443	3300010361	Tropical Forest Soil	GAKESGVVLIQIDENSATLTPFGSLIRINPVKVSSGRSWTAKLRAVLALLFR*
Ga0126378_113756031	3300010361	Tropical Forest Soil	MRVQIDENWATLTPFGSLIRANPAKLGSAKSWTAKLRAVLAFLFR*
Ga0126378_124658631	3300010361	Tropical Forest Soil	ENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALLFR*
Ga0126378_131639532	3300010361	Tropical Forest Soil	MDENSATLTPFGSLIRVSAAKVSSGKTWTAKLRAVLALFFR*
Ga0126381_1002568944	3300010376	Tropical Forest Soil	MLVQIEENSATLTPFGSLIRISPVKVSRGGSWTARLRAVLAFLFR*
Ga0126381_1008550194	3300010376	Tropical Forest Soil	VQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS*
Ga0126381_1026515221	3300010376	Tropical Forest Soil	MLVQIDENSATLTPFGSLIRISPVKASRGRSWTAKLRAVLALVFRW*
Ga0126383_112816352	3300010398	Tropical Forest Soil	MLVQIDENFVTLTPFGSLIRISPVKASRGRFWAAKLRAVLALLFRS*
Ga0126383_127061541	3300010398	Tropical Forest Soil	MDENSATLTPFGSLIRISAAKVNSGKTWTAKLRAVFALLFR*
Ga0126375_108205141	3300012948	Tropical Forest Soil	VLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS*
Ga0126375_120340351	3300012948	Tropical Forest Soil	VLVQIDENYATLTPFGSLVRINPAKVSSGKSWRARLRTVLALLFR*
Ga0126375_120383611	3300012948	Tropical Forest Soil	RAVLIQIEENSATLTPFGSLIRINPVKVNSGKSWTAKLRAILALLFS*
Ga0126369_123532543	3300012971	Tropical Forest Soil	VTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS*
Ga0182041_105332901	3300016294	Soil	VLVQTDENYAILTPFGSLIRISPVKVSRGRSWTARL
Ga0182033_116137142	3300016319	Soil	MLVQIDENSATLTPFGSLIRISSVKASRGRFWTAKLRAVLALVFRS
Ga0182035_100721381	3300016341	Soil	IDENSVTLTPFGSLIRTAPAKPSGAESWTAKLRRMFALLFS
Ga0182035_108063242	3300016341	Soil	VQIDENSATLTPFGSLIRIGPVKMSRGRSWTAKLRAVLALLFR
Ga0182035_109899421	3300016341	Soil	ENSATLTPFGSLIRVTPAKSRSAKSWTAKLGKILAWLFR
Ga0182035_114441341	3300016341	Soil	VLIQVEENAVTLTPFSSMRITPAKRNGARSSWTAKLRAVLALLFR
Ga0182032_102287992	3300016357	Soil	MLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAALALVFRW
Ga0182032_102337251	3300016357	Soil	SQELGTKKVSVMLVRMEDNSATLTPFGSVIRISPAKVANSSRSWTAKLRAVLALLFH
Ga0182032_110187301	3300016357	Soil	MLVHIDENSVTLTPFGSLIRISPVGASRGRSWTAKLRAVLA
Ga0182034_103248582	3300016371	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAVLAFLFR
Ga0182034_115568642	3300016371	Soil	MLVQIDENSVTLTPFGSLIRISPVKPSRGRFWTAKLRAVLALVFRS
Ga0182037_101459554	3300016404	Soil	PEGIPAIARYLRVMLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLRAVLALVFRS
Ga0182039_107906191	3300016422	Soil	RVMLVQIEENSATLTPFGSVIRINPASGVSNGKSWMAQLRAVLALLFR
Ga0126371_108091602	3300021560	Tropical Forest Soil	MRVQIDENWATLTPFGSLIRANPAKLGSAKSWTAKLRAVLALHFRYKA
Ga0126371_117736691	3300021560	Tropical Forest Soil	MDENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALLFR
Ga0126371_138040252	3300021560	Tropical Forest Soil	VLVQTDENSATLTPFGSLIRISAAKVSSGKTWTAKLRAVLALL
Ga0207852_10241271	3300026959	Tropical Forest Soil	NSVILTPLGSLIRITPAKPSGAKSWTAKLRAVFALLFR
Ga0207803_10244571	3300027000	Tropical Forest Soil	VILTPLGSLIRISPAKVSSGKSWTAKLRAVFALLFR
Ga0207862_11691601	3300027703	Tropical Forest Soil	VEENSVILTPLGSLIRITTHTKQSDAKSWTAKLRAVLALLFR
Ga0318516_100094786	3300031543	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAVLAFVFR
Ga0318541_104269151	3300031545	Soil	VLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318541_107730182	3300031545	Soil	MLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0310915_102993673	3300031573	Soil	ALARYLRVMLVQIHENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0310915_109643552	3300031573	Soil	MLVQIDENSVTLTPFGSLVRIGPVKASRGRSWTAKLRAVLALVFRW
Ga0310915_111671051	3300031573	Soil	SVTLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318572_101734422	3300031681	Soil	MLVQIDENSVTLTRFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306917_100990425	3300031719	Soil	DENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318501_102990121	3300031736	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAVLA
Ga0306918_101002071	3300031744	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAKLRAVLALVFRS
Ga0306918_115141141	3300031744	Soil	MLVQIDENSVTLTPFGSLIRFSPVKASRGRSWTAKLRTVLALVFRW
Ga0318502_106123382	3300031747	Soil	MLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318537_103051631	3300031763	Soil	YLRVMLVQIDENSVTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS
Ga0318535_101827992	3300031764	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAKLRAVLALVFRW
Ga0318509_101797813	3300031768	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLR
Ga0318521_108924481	3300031770	Soil	MLVQIEENSATLTPFGSVIRINPASRVSNGKSWMAKLRAVLALLFR
Ga0318546_102965353	3300031771	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRAV
Ga0318529_104633691	3300031792	Soil	DVKFGGGVVLIRIDENSATLTPFGSLIRITPAKSRSTKSWTAKLGKIFAWLFR
Ga0318548_106277712	3300031793	Soil	MLVQIDENSATLTPFGSLIRNSPVKASRGRFWTAKLRAVLALVFRS
Ga0318567_104147932	3300031821	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTARLRA
Ga0318511_101595072	3300031845	Soil	KQHTGRGNRVLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318511_102770852	3300031845	Soil	LTPFGSLIRISPVGASRGRFWTAKLRAVLALVFRS
Ga0306919_102612293	3300031879	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAK
Ga0306919_112924342	3300031879	Soil	TLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0318544_102144403	3300031880	Soil	LTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306925_100150007	3300031890	Soil	MLVQIEENSATLTPFGSVIRINPASGVSNGKSWMAQLRAVLALLFR
Ga0306925_101336873	3300031890	Soil	MLVQIEENSATLTPFGSLIRISPVKVSRGRSWTAKLRAVLALLFR
Ga0306925_103325371	3300031890	Soil	MLVQIDENSVTLTPFGSLIRISPVKASRVRSWTAKLRAVLALVFRS
Ga0318551_105528431	3300031896	Soil	MLVQIEENSATLTPFGSLIRISPVKASRGRSWTAKLRAVLALLFR
Ga0318520_109027581	3300031897	Soil	LTPFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0306923_113266101	3300031910	Soil	VLVQIDENSATLTPFGSLIRIGPVKMSRGRSWTAKLRAVLALLFR
Ga0306921_101344062	3300031912	Soil	MFVQIEENSVTLTPFGSLIRISSAKSRSAKSWTAKLGKILAWLFR
Ga0306921_116290161	3300031912	Soil	IDENSVTLTPFGSLIRNSPVKASRGRSWTAKLPAVLALVFRS
Ga0310912_108622222	3300031941	Soil	MLVHIDENSVTLTPFGSLIRISPVGASRGRSWTAKLRAVLALVLFPEWWAG
Ga0310916_103379403	3300031942	Soil	MLVQIDENSVTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS
Ga0310916_107205642	3300031942	Soil	VLVQIDENSVTLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0310910_103957201	3300031946	Soil	VTLTSFGSLIRISLVKASRGRFWTAKLRAVLALVFRS
Ga0310909_102545475	3300031947	Soil	MLVQIDENSVTLTPFGSLIRNSPVKASRGRSWTAKLPAVLALVFR
Ga0310909_104341583	3300031947	Soil	MLVQIDENSVTLTPFGSLIRISPVKASRGRFWIAKL
Ga0310909_106567853	3300031947	Soil	RHTGRGNRVMLVQIDENSVTLTPFGSLIRISPVKASRGRFWTAKLRAVLALVFRS
Ga0306922_102745054	3300032001	Soil	MLVQIDENSVTLTPFGSLIRISPVGASRGRFWTAKLRAVLALVF
Ga0306922_105315891	3300032001	Soil	MLVQIDENSVTLTPFGSLVRIGPVKASRGRSWTAKLRAVLALLFRW
Ga0310911_105547861	3300032035	Soil	VLVQIDENSVTLTPFGSLIRISLVKASRGRFWTAKPRAVLALVFRS
Ga0318549_101199821	3300032041	Soil	MLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLR
Ga0318549_105418191	3300032041	Soil	MLVQIDENSVTLTPFGSLIRFSPVKASRGRSWTAKLRAVLALVFRW
Ga0318532_100865362	3300032051	Soil	MLVQIDENSATLTPFGSLIRISPVKVSRGRSWTAKLRAVLALLFR
Ga0318532_101002313	3300032051	Soil	MLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLRAVLALVFR
Ga0318570_102922352	3300032054	Soil	MLVQIDENSATLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0318504_101117374	3300032063	Soil	MLVQIDENSVTLTPFGSLIRNSPVKVSRGRSWTAKLRAVLA
Ga0318513_102466361	3300032065	Soil	YLRVMLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306924_108900973	3300032076	Soil	LRVMLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVLALVFRW
Ga0306924_111648211	3300032076	Soil	VLVQTDENYTILTPFGSLIRISPVKVSRGRSWTARL
Ga0306924_118955132	3300032076	Soil	MLVQIDENSVTLTPFGSLVRISPVKASRGRSWTAKLRAVL
Ga0306920_1023812271	3300032261	Soil	IQIDENSVTLTPFGSLIRTAPAKPSGAESWTAKLRRMFALLFS
Ga0310914_102376434	3300033289	Soil	MLVQIDGNSVTLTPFGSLIRISPVKASRGRSWTAKLRAVLALVLFPEWWSG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters