Metagenome / Metatranscriptome Family F088050

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088050
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	67 residues
Representative Sequence	ETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Number of Associated Samples	70
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.26 %
% of genes near scaffold ends (potentially truncated)	93.58 %
% of genes from short scaffolds (< 2000 bps)	93.58 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (51.376 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.872 % of family members)
Environment Ontology (ENVO)	Unclassified (68.807 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.211 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104 1AF_2010_repII_A1DRAFT_100628741 2AF_2010_repII_A1DRAFT_100831693 3AF_2010_repII_A1DRAFT_101058262 4AF_2010_repII_A100DRAFT_10858523 5AF_2010_repII_A001DRAFT_101101592 6JGI10216J12902_1042235631 7JGIcombinedJ26739_1016620601 8Ga0066388_1055558101 9Ga0066388_1064941692 10Ga0066388_1065838831 11Ga0066388_1071692552 12Ga0008090_102120323 13Ga0070699_1021161192 14Ga0066905_1002921632 15Ga0066905_1015013372 16Ga0066905_1022076301 17Ga0066903_1007899634 18Ga0066903_1017129931 19Ga0066903_1042358802 20Ga0066903_1055945821 21Ga0066903_1089745683 22Ga0126380_106008862 23Ga0126373_117464041 24Ga0126376_124866892 25Ga0126372_106786401 26Ga0126372_111566671 27Ga0126372_126611081 28Ga0126378_118397491 29Ga0126377_106356482 30Ga0126379_109275811 31Ga0126381_1008438982 32Ga0124850_10365842 33Ga0126369_116597291 34Ga0182036_102842133 35Ga0182036_105557543 36Ga0182041_104660994 37Ga0182041_105761752 38Ga0182041_113944991 39Ga0182041_121700351 40Ga0182033_114788541 41Ga0182035_103654502 42Ga0182035_105414661 43Ga0182035_114494502 44Ga0182032_105810003 45Ga0182034_103090283 46Ga0182034_104586991 47Ga0182040_103048851 48Ga0182040_115757922 49Ga0182037_105457453 50Ga0182039_103579033 51Ga0182039_106386923 52Ga0182039_121675252 53Ga0182038_104188324 54Ga0182038_115339081 55Ga0209465_105873781 56Ga0318534_100922015 57Ga0318534_102466512 58Ga0318541_102283561 59Ga0318541_102887791 60Ga0318538_105034543 61Ga0318573_105420511 62Ga0318515_104888191 63Ga0310915_101940171 64Ga0310915_102649354 65Ga0310915_103404041 66Ga0318561_105347712 67Ga0318572_106679831 68Ga0318560_101914694 69Ga0318492_104856521 70Ga0318521_101612141 71Ga0318521_101617774 72Ga0318546_113069401 73Ga0318529_105777651 74Ga0318548_100406055 75Ga0318550_100655501 76Ga0318568_101973002 77Ga0318511_100988164 78Ga0318511_104020511 79Ga0318495_104172971 80Ga0306919_100704833 81Ga0306919_104301104 82Ga0318544_101587512 83Ga0306925_101800384 84Ga0318520_102833373 85Ga0310912_110390511 86Ga0310912_112962522 87Ga0310912_114123211 88Ga0310910_100399321 89Ga0310910_103282401 90Ga0310910_104484961 91Ga0318530_101757451 92Ga0306922_107035133 93Ga0318569_100201655 94Ga0318569_102372143 95Ga0318507_103109553 96Ga0318549_103579921 97Ga0318545_103892252 98Ga0318556_103620661 99Ga0318532_100912163 100Ga0318532_103097211 101Ga0318533_107520481 102Ga0318533_109866952 103Ga0318504_101404701 104Ga0318513_102240751 105Ga0318524_102222851 106Ga0318577_100587544 107Ga0318540_100003691 108Ga0318540_101307872 109Ga0318519_109579101
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104 1AF_2010_repII_A1DRAFT_100628741 2AF_2010_repII_A1DRAFT_101058262 3AF_2010_repII_A100DRAFT_10858523 4Ga0066388_1064941692 5Ga0066388_1065838831 6Ga0070699_1021161192 7Ga0066905_1002921632 8Ga0066905_1022076301 9Ga0066903_1017129931 10Ga0066903_1042358802 11Ga0126372_111566671 12Ga0126381_1008438982 13Ga0124850_10365842 14Ga0182033_114788541 15Ga0318534_100922015 16Ga0318561_105347712
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104 1AF_2010_repII_A1DRAFT_100628741 2AF_2010_repII_A1DRAFT_101058262 3AF_2010_repII_A100DRAFT_10858523 4Ga0066388_1064941692 5Ga0066388_1065838831 6Ga0070699_1021161192 7Ga0066905_1002921632 8Ga0066905_1022076301 9Ga0066903_1017129931 10Ga0066903_1042358802 11Ga0126372_111566671 12Ga0126381_1008438982 13Ga0124850_10365842 14Ga0182033_114788541 15Ga0318534_100922015 16Ga0318561_105347712
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.06% β-sheet: 16.18% Coil/Unstructured: 61.76%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04218	CENP-B_N	4.59
PF04392	ABC_sub_bind	2.75
PF00005	ABC_tran	1.83
PF14255	Cys_rich_CPXG	1.83
PF06568	DUF1127	1.83
PF03401	TctC	0.92
PF00486	Trans_reg_C	0.92
PF13185	GAF_2	0.92
PF01527	HTH_Tnp_1	0.92
PF00816	Histone_HNS	0.92

Showing 1 to 10 of 12 entries

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COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.75
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	1.83
COG2916	DNA-binding protein H-NS	Transcription [K]	0.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	48.62 %
Unclassified	root	N/A	51.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	48.62 %
Unclassified	root	N/A	51.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.62 %
Unclassified	root	N/A	51.38 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	11.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %
Unclassified	root	N/A	51.38 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.77 %
Unclassified	root	N/A	51.38 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.17 %
Unclassified	root	N/A	51.38 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	11.01 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.34 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.92 %
Unclassified	root	N/A	51.38 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.34 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.92 %
Unclassified	root	N/A	51.38 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Unclassified	root	N/A	51.38 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.83 %
Unclassified	root	N/A	51.38 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	11.01 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1.83 %
Streptomyces sp. Tu6071	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Tu6071	0.92 %
Unclassified	root	N/A	51.38 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10062874	Not Available	948	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10083169	Not Available	800	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10105826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	691	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1085852	Not Available	552	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10110159	Not Available	578	Open in IMG/M
3300000956\|JGI10216J12902_104223563	Not Available	613	Open in IMG/M
3300002245\|JGIcombinedJ26739_101662060	Not Available	537	Open in IMG/M
3300005332\|Ga0066388_105555810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	638	Open in IMG/M
3300005332\|Ga0066388_106494169	Not Available	589	Open in IMG/M
3300005332\|Ga0066388_106583883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M

Showing 1 to 10 of 108 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	14.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.32%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	73.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.09%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.09%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.92%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M

Showing 1 to 10 of 70 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100628741	3300000597	Forest Soil	EAFKLRPGLTETDLEVQAAFMDVCMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
AF_2010_repII_A1DRAFT_100831693	3300000597	Forest Soil	LEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN*
AF_2010_repII_A1DRAFT_101058262	3300000597	Forest Soil	CHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVXLPYCTEATPNDGRAFNLGHKFNSLCWRKN*
AF_2010_repII_A100DRAFT_10858523	3300000655	Forest Soil	AARDVRETAECHLEAFKLRPGLTETDFEVQAAFMDFCMEARGYVFLSGCTEATPKYNLGYKFNSLCWRRN*
AF_2010_repII_A001DRAFT_101101592	3300000793	Forest Soil	YVQVQNKNELMETAARDVRETAECHLEAFKLRPGLTETDFEVQAAFMDFCMEARGYVFLSGCTEATPKYNLGYKFNSLCWRRN*
JGI10216J12902_1042235631	3300000956	Soil	DVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEGRGYVFLPGCTETTPNAGRTYNLGYKFNSICWRKN*
JGIcombinedJ26739_1016620601	3300002245	Forest Soil	AFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCPPNAGRTYNLGYKFNSLCWRKN*
Ga0066388_1055558101	3300005332	Tropical Forest Soil	MLEPGLTEKELEIQAAFMDLCMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
Ga0066388_1064941692	3300005332	Tropical Forest Soil	METAAQDVRETAECHLEAFKLRPGLTETDLEVQAVFMDICMEARGYVLLPSCNPNAGRTYNLGYKFNSLCWRKN*
Ga0066388_1065838831	3300005332	Tropical Forest Soil	RPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGDTYNLGYKFNSLCWRKN*
Ga0066388_1071692552	3300005332	Tropical Forest Soil	GLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYNLGYKFNSLCWRKN*
Ga0008090_102120323	3300005363	Tropical Rainforest Soil	QKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
Ga0070699_1021161192	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	SQSKDSMVETAERDVRETAECHLEAFKSRPGSTETDLEVQAAFMDICMEARGYVFLPYCTEATPNDGRAFNLGHKFNSLCWRKN*
Ga0066905_1002921632	3300005713	Tropical Forest Soil	DLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN*
Ga0066905_1015013372	3300005713	Tropical Forest Soil	HVRAQSKDQVMETAARDVRETAECHLEAFKLRPGLTEMDLEVQAAFMDICMVARGYVFLRDCTETTPNAGRTYNLGYKFNSICWQKN*
Ga0066905_1022076301	3300005713	Tropical Forest Soil	DVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYSLGYKFNSLCWRKRSVVLDLFDKRFKVC*
Ga0066903_1007899634	3300005764	Tropical Forest Soil	TAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYLFLLSCTPNAVGYKFNSLCWRKN*
Ga0066903_1017129931	3300005764	Tropical Forest Soil	KLRPGLEETDVEIQAAFMDICMAARGYVFLPSCDEGTPNASRIYNLGYKFNSICWRKK*
Ga0066903_1042358802	3300005764	Tropical Forest Soil	WRWYEAQSKNQKMETAAQDVRETAECHLEAFKLRPGLTEKDLEVQAAFMDVCMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
Ga0066903_1055945821	3300005764	Tropical Forest Soil	EAQSKNQKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCTVRTPNAGHTFNLGYKFNSLCWRKN*
Ga0066903_1089745683	3300005764	Tropical Forest Soil	TAECHLEAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTYNLGYKFNSLCWRKN*
Ga0126380_106008862	3300010043	Tropical Forest Soil	YEAQSKNQKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDVCMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
Ga0126373_117464041	3300010048	Tropical Forest Soil	LKADSKNQMLETASRDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPGCTESTPNAGRAYSLGYKFNSICWRKN*
Ga0126376_124866892	3300010359	Tropical Forest Soil	ETAECHLEAFKLRSGLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYNLGYKFNSLCWRKN*
Ga0126372_106786401	3300010360	Tropical Forest Soil	YEAQSKNQKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
Ga0126372_111566671	3300010360	Tropical Forest Soil	LTKKGLEIQAAFMDLCMAARGYVFVPDCTETTASAASNPSYYYKFNSICWRKK*
Ga0126372_126611081	3300010360	Tropical Forest Soil	METAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYNLGYKFNSLCWRKN*
Ga0126378_118397491	3300010361	Tropical Forest Soil	TETDLEVQAAFMDICMEARGYIFLPGCAEATPNAGRAYNLGYKFNSICWRKN*
Ga0126377_106356482	3300010362	Tropical Forest Soil	WRWYEAQSKNQKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDVCMEARGYLFLPSWTPNAVGYKFNSLCWRKN*
Ga0126379_109275811	3300010366	Tropical Forest Soil	DTAECHLEAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTYNLGYKFNSLCWRKK*
Ga0126381_1008438982	3300010376	Tropical Forest Soil	FKLRPGLTETDFEVQAAFMDFCMEARGYVFLPGCTEANLGYKFNSLCWRKN*
Ga0124850_10365842	3300010863	Tropical Forest Soil	METTARDVRETAKCRLEAFMLEPGLTEKELEIQAAFMDLCMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
Ga0126369_116597291	3300012971	Tropical Forest Soil	EAQSKNQKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYLFLPSCTPNAVGYKFNSLCWRKN*
Ga0182036_102842133	3300016270	Soil	HLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0182036_105557543	3300016270	Soil	HLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0182041_104660994	3300016294	Soil	DVRETAECHLEAFKLRPGLTETDLQVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0182041_105761752	3300016294	Soil	CHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCNPNAGRTYNLSYKFNSLCWRK
Ga0182041_113944991	3300016294	Soil	TDLEVQAAFMDICMEARGYVFLPGCTEATPNAERAYNLGYKFNSICWRKN
Ga0182041_121700351	3300016294	Soil	TAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYLFLPSCTPNAVGYKFNSLCWRKN
Ga0182033_114788541	3300016319	Soil	VKSQSKDQMMETAERDVRETAECHLEAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTH
Ga0182035_103654502	3300016341	Soil	ETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCNPNAGRTYNLSYKFNSLCWRKN
Ga0182035_105414661	3300016341	Soil	TAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0182035_114494502	3300016341	Soil	LRPGLTETDLEVQAAFMDICMEARGYVFLPGCTEATPNAERAYNLGYKFNSICWRKN
Ga0182032_105810003	3300016357	Soil	CHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0182034_103090283	3300016371	Soil	VVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0182034_104586991	3300016371	Soil	VRAQSKNQMTETAARDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0182040_103048851	3300016387	Soil	TAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0182040_115757922	3300016387	Soil	METAAGDVRETAECHLEAFKLRPGLTETDLEVHAAFMDICMEARGYIFLPGCTAATPNAGRAYNLGYKFNSICWRKN
Ga0182037_105457453	3300016404	Soil	LEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0182039_103579033	3300016422	Soil	ETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0182039_106386923	3300016422	Soil	GDVRETAECHLEAFKLRPGLTETDLQVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0182039_121675252	3300016422	Soil	KNQKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYLFLPSCTPNAVGYKFNSLCWRKN
Ga0182038_104188324	3300016445	Soil	AQSKNQMMETAAGDVRETAECHLEAFKLRPGLTETDLQVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0182038_115339081	3300016445	Soil	VETAERDVRETAECHLEAFMSRPGSTETDLEVQAAFMDICMEARGYVFLPDCTEATPNDGRAFNLGHKFNSLCWRKN
Ga0209465_105873781	3300027874	Tropical Forest Soil	AAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYNLGYKFNSLCWRKN
Ga0318534_100922015	3300031544	Soil	MTETAAGDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGY
Ga0318534_102466512	3300031544	Soil	LRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318541_102283561	3300031545	Soil	DVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318541_102887791	3300031545	Soil	LEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPGCTEATPNAERAYNLGYKFNSICWRKN
Ga0318538_105034543	3300031546	Soil	TETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318573_105420511	3300031564	Soil	LEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318515_104888191	3300031572	Soil	LTETDLQVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0310915_101940171	3300031573	Soil	SKNQKMEAAAQVVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0310915_102649354	3300031573	Soil	ETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0310915_103404041	3300031573	Soil	METAAQVVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCNPNAGRTYNLSYKFNSLCWRKN
Ga0318561_105347712	3300031679	Soil	GLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0318572_106679831	3300031681	Soil	KNQKMETAAQDVRETAECHLEAFKLRSGLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYNLGYKFNSLCWRKN
Ga0318560_101914694	3300031682	Soil	TAAGDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEAQGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318492_104856521	3300031748	Soil	RDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318521_101612141	3300031770	Soil	AECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318521_101617774	3300031770	Soil	MTETAAGDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATP
Ga0318546_113069401	3300031771	Soil	ETAAQVVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0318529_105777651	3300031792	Soil	LRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTHNLGYKFNSLCWRKN
Ga0318548_100406055	3300031793	Soil	LQVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318550_100655501	3300031797	Soil	TETDLQVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318568_101973002	3300031819	Soil	ETAAGDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318511_100988164	3300031845	Soil	DVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318511_104020511	3300031845	Soil	HLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318495_104172971	3300031860	Soil	AQSKNQMMETAAGDVRETAECHLEAFKLRPGLTETDLEVHAAFMDICMEARGYIFLPGCTAATPNAGRAYNLGYKFNSICWRKN
Ga0306919_100704833	3300031879	Soil	VKSQSKDQMMETAERDVRETAECHLEAFKLRPGLTETDEEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTYNLGYKFNSLCWRKD
Ga0306919_104301104	3300031879	Soil	VQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318544_101587512	3300031880	Soil	PGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0306925_101800384	3300031890	Soil	VKSQSKDQMMETAERDVRETAECHLEAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTYNLGYKFNSLCWRKD
Ga0318520_102833373	3300031897	Soil	METAAQVVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCNPNAGRTY
Ga0310912_110390511	3300031941	Soil	LTETDLEVQAAFMDICMEARGYVFLPGCTEATPNAERAYNLGYKFNSICWRKN
Ga0310912_112962522	3300031941	Soil	DQTMETAERDVRDTAECHLEAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGRTYNLGYKFNSLCWRKN
Ga0310912_114123211	3300031941	Soil	ECHLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0310910_100399321	3300031946	Soil	EAAAQVVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPSCNPNAGRTYNLSYKFNSLCWRKN
Ga0310910_103282401	3300031946	Soil	ETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVLLPSCNPNAGRTYNLGYKFNSLCWRKN
Ga0310910_104484961	3300031946	Soil	ETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318530_101757451	3300031959	Soil	MEAAAQVVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFKSL
Ga0306922_107035133	3300032001	Soil	PGLTETDLEVQAAFMDICMEARGYVLLPSCNPNAGRTYNLGYKFNSLCWRKN
Ga0318569_100201655	3300032010	Soil	MTETAAGDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318569_102372143	3300032010	Soil	DVRETAECHLEAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTHNLGYKFNSLCWRKN
Ga0318507_103109553	3300032025	Soil	GLTETDLQVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318549_103579921	3300032041	Soil	VRAQSKNQMMETAAGDVRETAECHLEAFKLRPGLTETDLEVHAAFMDICMEARGYIFLPGCTAATPNAGRAYNLGYKFNSICWRKN
Ga0318545_103892252	3300032042	Soil	RWYEAQNKNQKMETAAQDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARRYVFLPSCNPNAGRTLSYKFNSLCWQKN
Ga0318556_103620661	3300032043	Soil	CHLEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318532_100912163	3300032051	Soil	MVETAERDVRETAECHLEAFKSRPGSTETDLEVQAAFMDICMEARGYVFLRGCTEEPLNAGGTHNLGYKFNSLCWRKN
Ga0318532_103097211	3300032051	Soil	YDSHLKADSKNQMLETASRDVRETAECHLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPGCTEATPNAERAYNLGYKFNSICWRKN
Ga0318533_107520481	3300032059	Soil	VKSQSKDQMMETAERDVRETAECHLEAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTYNL
Ga0318533_109866952	3300032059	Soil	GLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYNLGYKFNSLCWRKN
Ga0318504_101404701	3300032063	Soil	LEAFKLRPGLTETDLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAYNLGYKFNSICWRKN
Ga0318513_102240751	3300032065	Soil	HLEAFKLRPGLTETDLEVQAAFMDICMEARGYVFLPGCTESTPNAGRAYNLGYKFNSICWRKN
Ga0318524_102222851	3300032067	Soil	DLEVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRKN
Ga0318577_100587544	3300032091	Soil	METAERDVRDTAECHLKAFKLRPGLTETDVEIQAAFMDICMEARGYVFLRGCTEEPLNAGGTYNLGYKFNSLCWRKD
Ga0318540_100003691	3300032094	Soil	LRPGLTETDLEVQAAFMDICMAARGYVFFPDCTEATPNAGRTYNLGYKFNSICWRKN
Ga0318540_101307872	3300032094	Soil	EAFKLRPGLTETDLKVQAAFMDICMEARGYIFLPGCTEATPNAGRAHNLGYKFNSICWRK
Ga0318519_109579101	3300033290	Soil	ECHLEAFKLRSGLTETDLEVQAAFMDICMEARGYVFLPSCTPNAGRTYNLGYKFNSLCWRKN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088050

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences