Metagenome / Metatranscriptome Family F087950

Overview

Basic Information

• Family ID: F087950
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 110
• Average Sequence Length: 45 residues
• Representative Sequence: MQCWINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPG
• Number of Associated Samples: 56
• Number of Associated Scaffolds: 110

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 56.48 %
• % of genes near scaffold ends (potentially truncated): 80.91 %
• % of genes from short scaffolds (< 2000 bps): 83.64 %
• Associated GOLD sequencing projects: 48
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (83.636 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment (16.364 % of family members)
• Environment Ontology (ENVO): Unclassified (39.091 % of family members)
• Earth Microbiome Project Ontology (EMPO): Unclassified (39.091 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 23.53%
  β-sheet: 0.00%
  Coil/Unstructured: 76.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00730	HhH-GPD	3.64
PF00724	Oxidored_FMN	2.73
PF00441	Acyl-CoA_dh_1	1.82
PF13491	FtsK_4TM	1.82
PF07690	MFS_1	1.82
PF08359	TetR_C_4	1.82
PF01594	AI-2E_transport	1.82
PF00654	Voltage_CLC	1.82
PF09853	DUF2080	1.82
PF01546	Peptidase_M20	1.82

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2231	3-Methyladenine DNA glycosylase, HhH-GPD/Endo3 superfamily	Replication, recombination and repair [L]	3.64
COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	3.64
COG1194	Adenine-specific DNA glycosylase, acts on AG and A-oxoG pairs	Replication, recombination and repair [L]	3.64
COG0177	Endonuclease III	Replication, recombination and repair [L]	3.64
COG1059	Thermostable 8-oxoguanine DNA glycosylase	Replication, recombination and repair [L]	3.64
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	2.73
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	2.73
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.82
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	1.82
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.82

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.55 %
Unclassified	root	N/A	15.45 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.55 %
Unclassified	root	N/A	15.45 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	83.64 %
Unclassified	root	N/A	15.45 %

Level 4

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	69.09 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	1.82 %
Unclassified	root	N/A	15.45 %

Level 5

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	62.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
Spirochaetia	class	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia	0.91 %
Unclassified	root	N/A	15.45 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	0.91 %

Level 6

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	62.73 %
Spirochaetales	order	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales	0.91 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.91 %
Unclassified	root	N/A	15.45 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.91 %

Level 7

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	11.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Spirochaetaceae	family	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae	0.91 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.91 %
Unclassified	root	N/A	15.45 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	10.91 %

Level 8

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.73 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	6.36 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	6.36 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	1.82 %
Spirochaeta	genus	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta	0.91 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.91 %
Unclassified	root	N/A	15.45 %
unclassified Desulfobacterales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales	4.55 %

Level 9

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.73 %
Desulfatirhabdium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium	0.91 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1.82 %
Desulfobacterales bacterium PC51MH44	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44	2.73 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	6.36 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	1.82 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.91 %
Unclassified	root	N/A	15.45 %
unclassified Spirochaeta	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → unclassified Spirochaeta	0.91 %

Level 10

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.73 %
Desulfatirhabdium butyrativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans	0.91 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1.82 %
Desulfobacterales bacterium PC51MH44	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44	2.73 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	6.36 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	1.82 %
Spirochaeta sp.	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → unclassified Spirochaeta → Spirochaeta sp.	0.91 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.91 %
Unclassified	root	N/A	15.45 %
unclassified Desulfosarcina	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → unclassified Desulfosarcina	0.91 %

Level 11

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2.73 %
Desulfatirhabdium butyrativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans	0.91 %
Desulfobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1.82 %
Desulfobacterales bacterium PC51MH44	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44	2.73 %
Desulfosarcina sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → unclassified Desulfosarcina → Desulfosarcina sp.	0.91 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	0.91 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Olavius algarvensis Delta 1 endosymbiont	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	6.36 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	1.82 %
Spirochaeta sp.	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Spirochaeta → unclassified Spirochaeta → Spirochaeta sp.	0.91 %
Spirochaetes bacterium DG_61	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	0.91 %
Unclassified	root	N/A	15.45 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300024062|Ga0255039_10050962	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1568
(restricted) 3300024062|Ga0255039_10345558	Not Available	639
(restricted) 3300024528|Ga0255045_10467238	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis Delta 1 endosymbiont	522
(restricted) 3300027881|Ga0255055_10006904	All Organisms → cellular organisms → Bacteria	7189
3300001371|BBDRAFT_10439711	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	592
3300004023|Ga0055441_10044408	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	994
3300004026|Ga0055443_10134189	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium PC51MH44	734
3300004029|Ga0055442_10315011	Not Available	540
3300005589|Ga0070729_10727820	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	531
3300005590|Ga0070727_10331500	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	847

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	2.73%
Environmental	Environmental	97.27%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	86.36%
Lab Enrichment	Engineered → Lab Enrichment	2.73%
Terrestrial	Environmental → Terrestrial	10.91%

Category

Habitat	Taxonomy	Distribution
Defined Media	Engineered → Lab Enrichment → Defined Media	2.73%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Marine	Environmental → Aquatic → Marine	81.82%
Sediment	Environmental → Aquatic → Sediment	1.82%
Soil	Environmental → Terrestrial → Soil	10.91%

Type

Habitat	Taxonomy	Distribution
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	2.73%
Coastal	Environmental → Aquatic → Marine → Coastal	48.18%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.91%
Inlet	Environmental → Aquatic → Marine → Inlet	0.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.64%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.91%
Sediment	Environmental → Aquatic → Marine → Sediment	16.36%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.73%
Strait	Environmental → Aquatic → Marine → Strait	2.73%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.27%

Subtype

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	2.73%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	48.18%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.91%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.91%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.91%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	16.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.73%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.91%

Habitat

Habitat	Taxonomy	Distribution
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	2.73%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	9.09%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.91%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	10.91%
Marine Sediment	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Marine Sediment	2.73%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	0.91%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.27%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.73%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.91%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	16.36%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	12.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	2.73%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	0.91%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	1.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.91%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	15.45%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300001371	Baker-B-sed	Environmental
3300004023	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordA_D2	Environmental
3300004026	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordC_D2	Environmental
3300004029	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Bullhead_CordB_D2	Environmental
3300005589	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.2	Environmental
3300005590	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2	Environmental
3300005612	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2	Environmental
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental
3300005920	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2	Environmental
3300006467	Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
BBDRAFT_104397111	3300001371	Marine Estuarine	MQCWINGPTTGGIDDKIKMAIILLTTNIPAFHYSIIPFSG
Ga0055441_100444081	3300004023	Natural And Restored Wetlands	MQCWINGPAGGIDDKIQMANILLKTNIPTFHHSIIPFRGKFGSTKKPL
Ga0055443_101341891	3300004026	Natural And Restored Wetlands	MGFGMMQCWINGSATGGSDDNIKMVNILLKTNIPSFHPSII
Ga0055442_103150112	3300004029	Natural And Restored Wetlands	MQCWINDLATGGIDDKIKMAIILLKTNIPVFHHSIIPFPGQIRKP*
Ga0070729_107278201	3300005589	Marine Sediment	MQCWINGPATGGIDDKIKMAIILLKTNIPAFHHSIIPFSGQI
Ga0070727_103315001	3300005590	Marine Sediment	MQCWINGSATGGIDDKIKMVNILLKTNIPSFHPSIIPFPG
Ga0070723_102994691	3300005612	Marine Sediment	MQCWINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPG
Ga0070723_107143081	3300005612	Marine Sediment	MVSGVMQCWINVPATDGIEDKIKMAFFLLKTNIPAFHHSIIPFSGQIRNPK*
Ga0074473_102850923	3300005830	Sediment (Intertidal)	MMMQCWVNGPANDAIGDKIKMAYILLKTNIPSFQHSIIPFSGQI*
Ga0074473_106001835	3300005830	Sediment (Intertidal)	MQCWINGPATDGIDEKIKMASILLKTNIPTFLHFIIPFSGQIRKPQKNLYILSRL*
Ga0070725_103974992	3300005920	Marine Sediment	MQYWINGPATGGIDDKIKMANILLKTNIPSFQYSIIPFSGQI
Ga0099972_106040792	3300006467	Marine	MGSGMMQCWINGPATGGIDDKLKMVNILLKTNIPSFHPSIIPF
Ga0099972_113957541	3300006467	Marine	TDGIEDKIKMAFFLLKTNIPAFHHSIIPFSGQIRNPK*
Ga0099972_125304922	3300006467	Marine	MGSGIMQCWINGPATGGIDDKIKMAIILLKTNIPGFH
Ga0099972_125959361	3300006467	Marine	MGSGIMQYWINGPATGGIDDKIKMANILLKTNIPS
Ga0102541_10492921	3300007102	Marine Sediment	PCWMNGPATDGIDDKLKTVNILLKTNIPLFHCSIIPIVSEAN*
Ga0102541_12492852	3300007102	Marine Sediment	MQCWINVPATGGNDDKIKMANILLKTNIPAFHHSIIPFSEQIRKPQN
Ga0102541_14432012	3300007102	Marine Sediment	MGFGMMQCLINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPG
Ga0102955_12070951	3300007784	Soil	MGFGMMQCWINGSATGGSDDNIKMVNILLKTNIPS
Ga0114885_101603	3300008409	Sediment	MQYWINGPASGGIDDKIKMVNILLKTNIPSFHHSIIPFPG*
Ga0102956_10136381	3300009033	Soil	MQCWINDLATGGIDDKIKMAIILLKTNIPVFHHSIIPFSGQIRK
Ga0102956_10344451	3300009033	Soil	GMMQCWINGPATGGIDDKIKRVNILLKTNIPSFHPSIIPFPGQIRMPQKNLFILSRL*
Ga0102962_10456191	3300009060	Soil	QCWINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPKKSPYSQ*
Ga0102959_10308231	3300009138	Soil	GIMGFGIMQCRINGKIHIDDKIKMVKILLKTNIPSFHHSIIPFPRQIRKP*
Ga0102959_10641932	3300009138	Soil	MGFGMMQCWINGPATGGIDDKIKMVNIILKTNIPSFHPSIIPFPGQIQNPKKPPYSQ*
Ga0102959_10901932	3300009138	Soil	MMQCWINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPGKIRKPQK
Ga0102961_10435192	3300009145	Soil	ATSGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPKKSPYSQ*
Ga0102961_10445042	3300009145	Soil	MGSGIMQCWIDGSASGGIDGNIKMAIILLKTNIPA
Ga0118731_1022212992	3300010392	Marine	MGSGMMKCWNNGPATGGIDDKIKMVNILLKTNIPSFHHSIIPFPGQI*
Ga0118731_1029263213	3300010392	Marine	MQCWINGPATGGIDDKIKMANILLKTNIPSFQYSIIPFSGQIR
Ga0118731_1032820862	3300010392	Marine	MQCWINGPATGGIDDKIKMVNILLKTNIPVFHHSIIPFSGQIRK*
Ga0118731_1035781622	3300010392	Marine	MGSGIMQCWSNGPATGGIDDKIKMAIILLKTNIPVIHHSII
Ga0118731_1050002081	3300010392	Marine	MQFWVNGSAKGGIDDKIKRTNILLKTNIPSFHHSIIPFPG
Ga0118731_1053763542	3300010392	Marine	MQCWINGPATGGIDDKIKMTNILLKTNIPAFHHSIIPFSGKIRKSQK
Ga0118733_1090014841	3300010430	Marine Sediment	MQCWINGPATGGIDDKIKMAIILLKTNIPACHYSIIPFPGQIRKPQKT
Ga0164321_104051642	3300014903	Marine Sediment	MQFWINGPATGGIDDKIKMANILLNTNIPSFHHSIIPFLGQIRKPKK
Ga0193969_10649972	3300019712	Sediment	MQCWINGPATGGIDDKIKMAIILLKTNIPAFHHSIIPFS
Ga0194011_10120832	3300019721	Sediment	MQCWINGPATGGIEGKIIMAIILLKTNIPAFHYSSFGA
Ga0194012_10109751	3300019739	Sediment	MGFGKMQCWANGPATEGIGDKIKIAYILLRTNFPEFHHSIIPFSGQI
Ga0210365_105973254	3300021351	Estuarine	MQCWIDNPATGGIDEKIKMASILLKTNIPTFHHFINPFSGQIRKLQKKPLYSQ
Ga0210365_106830471	3300021351	Estuarine	MQCWINGPATSGIDDKIKMAIILLKTNIPAFHHSIIPFSGQIRTPQKISISS
Ga0224498_100342761	3300022202	Sediment	MGFGMMQCWINGPATGGIDDKIKMVNIILKTNIPSFHPSIIPFPGQIQNPKKPPYSQ
Ga0224498_100407872	3300022202	Sediment	MGSGIMQCWINGPATGGIDDKIKMAIILLKINIPAFHHSIIPF
Ga0224498_100666832	3300022202	Sediment	MGFGMMQCLINAPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPK
Ga0224514_100127091	3300022217	Sediment	MMQCWINGPATGGIDDKIKRVNILLKTNIPSFHPSIIPFPGQIRMPQKNLFILSRL
Ga0224514_101864751	3300022217	Sediment	MQCWIDEPITGKIDDKITMAIILLETNIPAFHHSIIPFSGQIRKPQNTYIFSVGC
Ga0224514_102177161	3300022217	Sediment	MQCWINGPATGGIDDKIKMAIILLTTNIPAFQHSTI
Ga0224514_102701532	3300022217	Sediment	TGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPKKSPYSQ
Ga0224514_103941861	3300022217	Sediment	MQCWINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPGKIRKPQK
Ga0224514_103951441	3300022217	Sediment	MQCWINGPAAGGIDDKIKIAIILFKTNIPVFHHSIIPFSGQIRKFRKNH
Ga0224502_100138034	3300022218	Sediment	NGPATGGIDDKLKMVNILLKTNIPAFHPSIIPFPG
Ga0224502_100189532	3300022218	Sediment	MQCLINGPATGGIDDKIKMVKILLKTNIPSFHPSIIPFPEKIRRPKKSPYSQ
Ga0224502_100232921	3300022218	Sediment	MQCWINDPATGGIDDKIKMAIILWENNIPAFHHSIIPFS
Ga0224502_100663112	3300022218	Sediment	MQCWINGPATSGIGDKIKMVNILLKTNIPSFHPSIIPFPGQIRKSQ
Ga0224502_101274573	3300022218	Sediment	MQCWINGPATGAIDDKIKMVDILLKTNIPSFHPSI
Ga0224513_100987752	3300022220	Sediment	MGFGMMQCWINGPATSGIGDKIKMVNILLKTNIPSFHPSIIPFPGQ
Ga0224513_104241621	3300022220	Sediment	MGSGMMQCWINGPATGGIDDKIKMVNILLKTNIPSFHPS
Ga0224509_103663092	3300022306	Sediment	TGGIDYKIKMAIILWKNNIPAFHHSIIPFSGQIRKP
Ga0224504_103536911	3300022308	Sediment	GMVQCWINGPATSGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPKKSPYSQ
Ga0210374_10039662	3300022391	Estuarine	MQCWINGPATGGIDDKIKMVNILLKTNIPAFHPSIIPFPGKIRKSQKSPILSIDC
(restricted) Ga0255039_100509623	3300024062	Seawater	MQCWINCPATSGIDDKVIMANILLKTNIPSFHHSITPF
(restricted) Ga0255039_103455582	3300024062	Seawater	MQCWINGPATGVIDDKIKMANILLKTNIPAFHHSIIPFPEQIRKPQNNF
(restricted) Ga0255045_104672381	3300024528	Seawater	MQCWINGPATDGNADKNKMAYILLKTNIPAFHHSITPFSG
Ga0210140_10398931	3300025566	Natural And Restored Wetlands	MGFGMMQCWINGSATGGSDDNIKMVNILLKTNIPSFHPSIIPFPGEI
Ga0210118_10340953	3300025974	Natural And Restored Wetlands	MGSGIMQCWINGPATGRIDDKIKMAIILLKTNIPAFHHSVIPFLG
Ga0210118_10453482	3300025974	Natural And Restored Wetlands	LINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPKKSPYSQ
Ga0210106_10122392	3300025983	Natural And Restored Wetlands	MQCWINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPGKIRKPQKTSIL
Ga0210128_10436131	3300025991	Natural And Restored Wetlands	MQCWINGPATGGIDDKIKMAIILLKTNIPAFHHSIIPFSGPIRKPQ
Ga0209920_10476742	3300026099	Soil	MGSGMVQCWINGPATSGIDDKIKMVNILLKTNIPSFHPSIIPFPGQI
Ga0209957_10183563	3300026126	Soil	MQCWINGPATDGIDDKIKMANILLKTNIPPFHYSISGANS
Ga0209928_10193472	3300026131	Soil	MQCWINGPATGGIDDKIKMAIILLKTNIPAFHHSIIPF
Ga0209578_105647371	3300027820	Marine Sediment	MGSGMMQCWINGPATGGIDDKIKMANILLKTNIPSFHHSIIPFPGQIRR
Ga0209692_101156292	3300027828	Marine Sediment	ERMMQSWINGPATGGIDDKIKMVNILFKTNIPSLHYSIIPFPRQIRKP
Ga0209271_100639152	3300027845	Marine Sediment	MQCWINGSATGGIDDKIKMVNILLKTNIPSFHPSIIPFPGQIRRP
Ga0209271_101460501	3300027845	Marine Sediment	MQCWINGLATGGFDDKIKMANILLKTNIPSFQYSIIPFSGQIREPQKISIFS
Ga0209271_102418741	3300027845	Marine Sediment	MQCWINGPATGGIDVKIKMANILLKTNIPSFQYSIIPFSGQIRKP
Ga0209271_102508451	3300027845	Marine Sediment	MQCWINDPATGGIDDKLKMVNILLKTNIPSFHPSIIPFPGQIRRPQKTSIFSV
(restricted) Ga0255055_100069044	3300027881	Seawater	MQCWINVPATNGIDDKIKMAYILLKTNIPEFHHSIIPFSWQFRNPK
Ga0209536_1000617112	3300027917	Marine Sediment	MMECWIDNPARGEIEDKIKMATIRLKTNIPSFQHSNIPFSIQIW
Ga0265303_109272712	3300028600	Sediment	MQCWINGPAIDGIDDKIKMAYILLKTNIPTFHHSNIPFSG
Ga0316201_102780503	3300032136	Worm Burrow	MGSGMMQCWINGPATGGIDDKIKMVNILLKTNIPSFHLSIIPFPGQIRRPQKTSIFS
Ga0316201_105830683	3300032136	Worm Burrow	MQCWINGPATGGIDDKLKMVNILLKTNIPAFHPSIIPFPGQIRRPQ
Ga0316187_100154743	3300032231	Worm Burrow	MQYLINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPQKSPYSQ
Ga0316187_102113251	3300032231	Worm Burrow	MGFGMMQCLINGPAAGGIDDKIKMVNILLKTNIPSFHPSIIPFPGKIRKPQK
Ga0316187_111047292	3300032231	Worm Burrow	MVQCWINGPATSGIDDKIKMVNILLKTNIPSFHPSI
Ga0316198_107511152	3300032251	Sediment	MQCCNNGPATGGIDDKTKMANILLKTNIPVFHHSIIPF
Ga0316196_100465493	3300032252	Sediment	MQCWINGPATDGINGKILMAIILLKTNIPAFHHSIIPFSRQIRKPPKTSI
Ga0316196_102586611	3300032252	Sediment	MGFGMMQCLINGPAAGGIDDKIKMVNILLKTNIPSFHPSIIPF
Ga0316196_103507131	3300032252	Sediment	MQYWINGPVLGGIDDKIKMAIILLKTNIPAFHHSIIPFSG
Ga0316191_101096151	3300032258	Worm Burrow	MQCWINGPSTGEIDDKIKMAIILLKTNIPAFHYSII
Ga0316191_101128983	3300032258	Worm Burrow	MQCWINGPATGGIDDKLKMVNILLKTNIPAFHPSIIPFPG
Ga0316191_101300861	3300032258	Worm Burrow	MQCLINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPEKIRRPKKSPYSQ
Ga0316191_107319101	3300032258	Worm Burrow	MGFGMMQCLINGPAAGGIDDKIKMVNILLKTNIPSFHPSIIPFPGKIRKP
Ga0316190_100592214	3300032259	Worm Burrow	VGSGMMQCWINGPATGGIEDKIKMVNILLKTNNPSFHPSIIPFPGK
Ga0316190_103033171	3300032259	Worm Burrow	MQYLINGPASGGIDDKLKMVNILLKTNVPAFHSSIIPF
Ga0316190_106150562	3300032259	Worm Burrow	MQCWINNPAAVGIDDKIKIAIILLKTNIPAFHHSIIPFPGQ
Ga0316192_102305701	3300032260	Worm Burrow	MQCWINVPATGRVDDNIKMANILLKTNIPSFHRSIV
Ga0316192_102789492	3300032260	Worm Burrow	MQCWINGPATGGSDDNIKMVNILLKTNILAFHPSMIPISGQI
Ga0316192_109660821	3300032260	Worm Burrow	MQCWINGITTGGIDVKIKMAIFLLKTNIPAFHHSIIPFSGQIRKLKNT
Ga0316194_100870021	3300032262	Sediment	MMQCWINGPATGGIDDKIKMVNILLKTNIPSFHPSIIPFPGKIRKPQKTSILSVGC
Ga0316194_102415542	3300032262	Sediment	MQCWINGPAAVGIDDKIKIAISLLKTNIPAFHHSIIPFPGQIRKPQ
Ga0316194_102642841	3300032262	Sediment	MQCWINGSAAVGIDDKIKIAIILLKTNIPAFHHSIIPFPGQIRKPQKTS
Ga0316194_107603202	3300032262	Sediment	MQCWINVPATSGIDDKIKMVIILLKTNIPAFHPSIIPF
Ga0316194_108744422	3300032262	Sediment	MGSEIMQYXINGPATGGIDGKIIIAIIVLKTNIPAFHHSI
Ga0316189_100945792	3300032272	Worm Burrow	MQCWINGPATGGINDKIQMVTIILKTNIPSFHPCIIPFPGQIRKPQKNLHILSRL
Ga0316189_103911013	3300032272	Worm Burrow	MMGFGMMQCLINGPAAGGIDDKIKMVNILLKTNIPSFHPSIIPFPGKIRKPQKIS
Ga0316193_101563941	3300033429	Sediment	WINGPATGGIDDKLKMVNILLKTNIPAFHPSIIPFPR
Ga0316193_103891251	3300033429	Sediment	MQYLINGPASGGIDDKLKMVNILLKTNVPAFHSSIIPFLGHIQRPQ
Ga0316193_106543412	3300033429	Sediment	MKCWVNGPATGGIDDKIKIAIILLKTNIPVFHYSIF
Ga0316193_108211392	3300033429	Sediment	MQCWINGPAADEIDDNINRAYILLKTNIPAFHHPIIPF