Metagenome / Metatranscriptome Family F087948

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087948
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	53 residues
Representative Sequence	LQYDVTVEDPNVWETPWVIPARTFPFRPELEFVSEFVCESTVDYQRLFKKN
Number of Associated Samples	98
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.18 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.20

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (37.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.86% β-sheet: 0.00% Coil/Unstructured: 91.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.20
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.20
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02771	Acyl-CoA_dh_N	12.73
PF08028	Acyl-CoA_dh_2	5.45
PF02900	LigB	3.64
PF13620	CarboxypepD_reg	3.64
PF08308	PEGA	1.82
PF00694	Aconitase_C	1.82
PF04002	RadC	0.91
PF02653	BPD_transp_2	0.91
PF00384	Molybdopterin	0.91
PF00487	FA_desaturase	0.91
PF02687	FtsX	0.91
PF01757	Acyl_transf_3	0.91
PF09980	DUF2214	0.91
PF00005	ABC_tran	0.91
PF01717	Meth_synt_2	0.91
PF01556	DnaJ_C	0.91
PF13602	ADH_zinc_N_2	0.91
PF08281	Sigma70_r4_2	0.91
PF01493	GXGXG	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	18.18
COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.91
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.91
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	0.91
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.82 %
Unclassified	root	N/A	28.18 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	31.82 %
Unclassified	root	N/A	28.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	10.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	24.55 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10.00 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.00 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1.82 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	5.45 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	1.82 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	5.45 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	1.82 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
unclassified Pseudonocardiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae	4.55 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	1.82 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.91 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.55 %
Pseudonocardiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	4.55 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1.82 %
Amycolatopsis saalfeldensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis saalfeldensis	0.91 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_101835719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300001372\|YBBDRAFT_1122683	Not Available	550	Open in IMG/M
3300001848\|RCM47_1135609	All Organisms → cellular organisms → Bacteria	1238	Open in IMG/M
3300004013\|Ga0055465_10229541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300004463\|Ga0063356_101124358	Not Available	1134	Open in IMG/M
3300004463\|Ga0063356_104905862	All Organisms → cellular organisms → Bacteria → Acidobacteria	575	Open in IMG/M
3300004463\|Ga0063356_105122391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300004643\|Ga0062591_100975018	All Organisms → cellular organisms → Bacteria → Acidobacteria	803	Open in IMG/M
3300005335\|Ga0070666_11404303	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005347\|Ga0070668_101094384	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	719	Open in IMG/M
3300005353\|Ga0070669_100277938	All Organisms → cellular organisms → Bacteria	1341	Open in IMG/M
3300005354\|Ga0070675_101588219	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300005356\|Ga0070674_101059210	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300005365\|Ga0070688_101557070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300005440\|Ga0070705_101833985	Not Available	515	Open in IMG/M
3300005456\|Ga0070678_101442778	Not Available	643	Open in IMG/M
3300005564\|Ga0070664_101332693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300005617\|Ga0068859_100234876	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300005617\|Ga0068859_101756859	Not Available	685	Open in IMG/M
3300005844\|Ga0068862_100313086	All Organisms → cellular organisms → Bacteria	1447	Open in IMG/M
3300006237\|Ga0097621_102084245	Not Available	542	Open in IMG/M
3300006755\|Ga0079222_12221357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300006845\|Ga0075421_100201543	All Organisms → cellular organisms → Bacteria	2463	Open in IMG/M
3300006846\|Ga0075430_100118554	All Organisms → cellular organisms → Bacteria	2206	Open in IMG/M
3300006854\|Ga0075425_102937257	Not Available	522	Open in IMG/M
3300006880\|Ga0075429_100937756	Not Available	757	Open in IMG/M
3300006881\|Ga0068865_101371628	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300006881\|Ga0068865_102170118	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300006894\|Ga0079215_10150098	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300006904\|Ga0075424_101796751	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300006969\|Ga0075419_10021971	All Organisms → cellular organisms → Bacteria	3948	Open in IMG/M
3300006969\|Ga0075419_10337934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1022	Open in IMG/M
3300007004\|Ga0079218_10034578	All Organisms → cellular organisms → Bacteria	2974	Open in IMG/M
3300009012\|Ga0066710_104878426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M
3300009094\|Ga0111539_10533677	Not Available	1367	Open in IMG/M
3300009100\|Ga0075418_11043010	Not Available	885	Open in IMG/M
3300009156\|Ga0111538_10744859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1241	Open in IMG/M
3300009162\|Ga0075423_12770155	Not Available	537	Open in IMG/M
3300009177\|Ga0105248_11174724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300009609\|Ga0105347_1178247	Not Available	844	Open in IMG/M
3300010044\|Ga0126310_11203760	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	608	Open in IMG/M
3300010048\|Ga0126373_11113768	Not Available	855	Open in IMG/M
3300010362\|Ga0126377_10954152	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300010362\|Ga0126377_11211937	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300010401\|Ga0134121_11699763	Not Available	654	Open in IMG/M
3300010403\|Ga0134123_10192464	Not Available	1728	Open in IMG/M
3300011432\|Ga0137428_1088554	All Organisms → cellular organisms → Bacteria → Proteobacteria	867	Open in IMG/M
3300012212\|Ga0150985_106278471	Not Available	543	Open in IMG/M
3300012212\|Ga0150985_111453998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	882	Open in IMG/M
3300012358\|Ga0137368_10619454	Not Available	686	Open in IMG/M
3300012469\|Ga0150984_110076537	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300012469\|Ga0150984_115414269	Not Available	580	Open in IMG/M
3300012469\|Ga0150984_117763081	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300012511\|Ga0157332_1075639	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300012532\|Ga0137373_10596178	Not Available	834	Open in IMG/M
3300012899\|Ga0157299_10101552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	745	Open in IMG/M
3300012905\|Ga0157296_10031897	All Organisms → cellular organisms → Bacteria → Acidobacteria	1125	Open in IMG/M
3300012914\|Ga0157297_10027275	All Organisms → cellular organisms → Bacteria → Acidobacteria	1336	Open in IMG/M
3300012971\|Ga0126369_10589290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis saalfeldensis	1181	Open in IMG/M
3300013296\|Ga0157374_11219174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300013308\|Ga0157375_10725670	Not Available	1146	Open in IMG/M
3300013308\|Ga0157375_11355715	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	837	Open in IMG/M
3300013308\|Ga0157375_11458688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	807	Open in IMG/M
3300013308\|Ga0157375_13045064	Not Available	559	Open in IMG/M
3300014272\|Ga0075327_1240056	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	588	Open in IMG/M
3300014745\|Ga0157377_11343388	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300014969\|Ga0157376_10083688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2745	Open in IMG/M
3300015201\|Ga0173478_10295321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	731	Open in IMG/M
3300015245\|Ga0137409_11510524	Not Available	520	Open in IMG/M
3300015372\|Ga0132256_100104695	All Organisms → cellular organisms → Bacteria	2762	Open in IMG/M
3300015373\|Ga0132257_101764184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	794	Open in IMG/M
3300015374\|Ga0132255_103732384	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300016341\|Ga0182035_11180232	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300018079\|Ga0184627_10194627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1072	Open in IMG/M
3300018431\|Ga0066655_11425057	Not Available	504	Open in IMG/M
3300018432\|Ga0190275_12075475	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300018469\|Ga0190270_10528893	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1131	Open in IMG/M
3300019377\|Ga0190264_10980106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300022886\|Ga0247746_1174710	Not Available	556	Open in IMG/M
3300023270\|Ga0247784_1079082	Not Available	825	Open in IMG/M
3300025903\|Ga0207680_10190167	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300025930\|Ga0207701_11360275	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300025931\|Ga0207644_11029227	Not Available	691	Open in IMG/M
3300025938\|Ga0207704_11098180	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300025945\|Ga0207679_11918833	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300025986\|Ga0207658_11987736	Not Available	529	Open in IMG/M
3300026088\|Ga0207641_11686061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300027639\|Ga0209387_1084002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300027691\|Ga0209485_1162703	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300027907\|Ga0207428_10449108	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300027909\|Ga0209382_10922770	Not Available	917	Open in IMG/M
3300028608\|Ga0247819_10269299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	943	Open in IMG/M
3300028802\|Ga0307503_10676774	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300031231\|Ga0170824_124529444	Not Available	591	Open in IMG/M
3300031712\|Ga0265342_10666560	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031824\|Ga0307413_11758862	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300031847\|Ga0310907_10511871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300031941\|Ga0310912_10614135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	846	Open in IMG/M
3300031943\|Ga0310885_10891372	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300031944\|Ga0310884_10699088	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	613	Open in IMG/M
3300031947\|Ga0310909_10164367	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300032004\|Ga0307414_10159922	All Organisms → cellular organisms → Bacteria	1788	Open in IMG/M
3300032005\|Ga0307411_12240098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300032012\|Ga0310902_10324315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → unclassified Pseudonocardiaceae → Pseudonocardiaceae bacterium	956	Open in IMG/M
3300032076\|Ga0306924_10855844	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300032180\|Ga0307471_101250162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	906	Open in IMG/M
3300033412\|Ga0310810_10419496	All Organisms → cellular organisms → Bacteria → Acidobacteria	1371	Open in IMG/M
3300034660\|Ga0314781_040564	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	51.82%
Environmental	Environmental	48.18%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	51.82%
Terrestrial	Environmental → Terrestrial	42.73%
Aquatic	Environmental → Aquatic	5.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.55%
Sediment	Environmental → Aquatic → Sediment	2.73%
Marine	Environmental → Aquatic → Marine	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.64%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Loam	Environmental → Terrestrial → Soil → Loam	1.82%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.00%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.91%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.73%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.91%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Estuarine	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001372	YB-Back-sed	Environmental	Open in IMG/M
3300001848	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM47, ROCA_DNA265_0.2um_TAP-S_3a	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011432	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014272	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1018357191	3300000956	Soil	FQLKPDGNLQYEVTVEDPNVWQIPWKIAARTFSRRPELENVSEFVCESTVDYQRLFKQ*
YBBDRAFT_11226832	3300001372	Marine Estuarine	GSLQYEVTVEDPNVWTRPWVIPARTFPFRPETEYVSEFVCDAPVVDYQKLFGKN*
RCM47_11356093	3300001848	Marine Plankton	RRLDNGSLQYDVTVEDPNVWVSPWVMPQRTFALRPDLETVDEFVCESSQDYGKLFKKD*
Ga0055465_102295411	3300004013	Natural And Restored Wetlands	LQYDVTVEDPNVWQTPWTIPTRTFQRRPEENVAEFVCESQVDYQRLFRK*
Ga0063356_1011243581	3300004463	Arabidopsis Thaliana Rhizosphere	LQYDVTVEDPNVWEKPWVIPTRTFPFRPEAEFVSEFVCESTVDYQRLFKE*
Ga0063356_1049058621	3300004463	Arabidopsis Thaliana Rhizosphere	ENGNLQYEVTVEDPNVWVRPWVIPARTFQRRPETEYVSEFVCDAPPVDYQKLFGKQ*
Ga0063356_1051223911	3300004463	Arabidopsis Thaliana Rhizosphere	VEDPNVWVRPWVIPARTFTFRPETEFVSEFVCDAPPVDYQKLFGK*
Ga0062591_1009750182	3300004643	Soil	LSLQYEVTVEDPNVWQTPWAIPARTFPFRPELEWVSEFVCEPRVDYQKLFKKEP*
Ga0070666_114043031	3300005335	Switchgrass Rhizosphere	VEDPNVWTTPWVIPARTFAGRPELDSVAEFVCESRVDYSKMFKK*
Ga0070668_1010943842	3300005347	Switchgrass Rhizosphere	ENGNLQYDVTVEDPNVWAAPWVIPSRTFTHRPEAEWVDEFVCDAPPVDYQKLLGKD*
Ga0070669_1002779381	3300005353	Switchgrass Rhizosphere	FRLLPDGNLQYDVTVEDPNVWQTPWVIPARTFQRRQELENVAEFVCESTVDYQRLFKK*
Ga0070675_1015882191	3300005354	Miscanthus Rhizosphere	YDVTVEDPNVWAGPWVIPSRTFAFRPEAEWVEEFVCDTNVDYNKLFKKD*
Ga0070674_1010592102	3300005356	Miscanthus Rhizosphere	LQYDVTVEDPEVFAAPWVIPARTFVLRPETEWVEEFVCESNVDYNKLFKK*
Ga0070688_1015570701	3300005365	Switchgrass Rhizosphere	DVTVEDPNVWQAPWVIPARTFQRRSELENVAEFVCESTVDYQRLFKK*
Ga0070705_1018339852	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LENGSLQYEVTVEDPNVWVAPWAIPARTFQRQPQTEFVSEFVCDAPPVDYQKLFGKQ*
Ga0070678_1014427781	3300005456	Miscanthus Rhizosphere	GSLQYEVTVEDPNVWVKPWDIPARTFAFRPETEFVSEFVCDAPVVDYQKLFGKTDK*
Ga0070664_1013326932	3300005564	Corn Rhizosphere	QYEVTVEDPNVWQNPWKIAARTFPRRQELENVSEFVCESTVDYQRLFKQ*
Ga0068859_1002348763	3300005617	Switchgrass Rhizosphere	PDGNLQYDVTVEDPNVWQAPWVIPARTFQRRSELENVAEFVCESTVDYQRLFKK*
Ga0068859_1017568592	3300005617	Switchgrass Rhizosphere	EVTVEDPNVWVRPWAIPARTFQLRPETEYVSEFVCDAPVVDYQKLFGK*
Ga0068870_108134202	3300005840	Miscanthus Rhizosphere	PNVWQTPWKIAARTFPRRSELENVSEFVCESTVDYQRLFKQ*
Ga0068862_1003130861	3300005844	Switchgrass Rhizosphere	ERFRLLPDGNLQYDVTVEDPNVWQTPWVIPARTFQRRQELENVAEFVCESTVDYQRLFKK
Ga0097621_1020842451	3300006237	Miscanthus Rhizosphere	LQYEVTVEDPNVWVKPWVIPARTFAFRPETEFVSEFVCDAPVVDYQKLFGKTDK*
Ga0079222_122213571	3300006755	Agricultural Soil	DPNVWQTPWKIAARTFPRRAELENVSEFVCESTVDYQRLFKQ*
Ga0075421_1002015433	3300006845	Populus Rhizosphere	YEVTVEDPNVFAAPWVIPARTFALRPELEWVEEFVCETNVDYNKYFKKD*
Ga0075430_1001185541	3300006846	Populus Rhizosphere	NLQYDVTVDDPNVWETAWVIPSRTFLFRSELESVSEFVCESTVDYQRLFKK*
Ga0075431_1020249382	3300006847	Populus Rhizosphere	NVWEQPWAIPPRTFPLRPELEFVAEFVCESTVDYQRLFKK*
Ga0075425_1029372572	3300006854	Populus Rhizosphere	ERFKRLENGNLQYDVTVEDPNVWVGPWTIPTRTFALRPEAEWVEEFVCDTNVDYDKLFKKN*
Ga0075429_1009377561	3300006880	Populus Rhizosphere	ENGNLQYDVTVEDPNVWETPWVIPSRTFPFRPELESVSEFVCESTVDYQRLFKK*
Ga0068865_1013716281	3300006881	Miscanthus Rhizosphere	KKLENGSLQYEVTVEDPNVWVRPWVIPARTFALRAETEYVSEFVCDAPVVDYQKLFEKK*
Ga0068865_1021701181	3300006881	Miscanthus Rhizosphere	KLDNGNLQYDVTVDDPNVWEKPWVIPARTFALRPEIEFVSEFVCESTVDYQRLFKR*
Ga0079215_101500981	3300006894	Agricultural Soil	NGSLQYDVTVEDPNVWEKPWVIPPRTFAFRPELEFVSEFVCESTVDYGRLFKKD*
Ga0075424_1017967513	3300006904	Populus Rhizosphere	ERFRKLENGNLQYDVTVEDPNVWQTPWVIPARTFAFRPEFETVSEFVCESTVDYQRLFKK
Ga0075419_100219714	3300006969	Populus Rhizosphere	KMETGDLQYDVTVEDPNVWEKPWVIPARTFPYRPELEFVSEFVCESTVDYQRLFKK*
Ga0075419_103379342	3300006969	Populus Rhizosphere	TVEDPNVWQTPWVIPPRTFQRRAELENVSEFVCESTVDYQRLFKR*
Ga0079218_100345784	3300007004	Agricultural Soil	VERFKLLPDGNLQYDVTVADPNVWQTPWTIPPRTFQRRPEENVAEFVCESTVDYQRLYKK
Ga0066710_1048784261	3300009012	Grasslands Soil	KRLENGSLQYDLTVEDPNVFESPWVMPTRTFALRPELETVEEIVCESNVDYNKLFKKD
Ga0111539_105336771	3300009094	Populus Rhizosphere	KLENGNLQYDVTVEDPNVWQTPWVIPARTFAFRPEFETVSEFVCESTVDYQRLFKK*
Ga0075418_110430103	3300009100	Populus Rhizosphere	ENGNLQYEVTVEDPNVWVSPWAIPARTFTLRPETEWVSEFVCDAPPVDYKKLFGKD*
Ga0111538_107448591	3300009156	Populus Rhizosphere	QYDVTVEDPNVWQAPWVIPARTFQRRSELENVAEFVCESTVDYQRLFKK*
Ga0075423_127701551	3300009162	Populus Rhizosphere	FKRLENGNLQYDVTVEDPNVWVSPWVIPTRTFTRRPEADWVEEFVCESNIDYNRLFKKEDAK*
Ga0105248_111747241	3300009177	Switchgrass Rhizosphere	TVEDPNVWVRPWVIPARTFPLRPEAEYVSEFVCDAPVVDYQKLFGK*
Ga0105347_11782472	3300009609	Soil	ERFRKLENGSLQYEVTVDDPNVWEQPWAIAPRTFPLRPELEFVAEFVCESTVDYQRLFKK
Ga0126310_112037602	3300010044	Serpentine Soil	GSLQYDVTVEDPNVWQAPWVIPARTFARRTELDNVAEFVCESTVDYNRLFKKE*
Ga0126373_111137681	3300010048	Tropical Forest Soil	TVEDPNVWTGAWVIPTRTFAYRPEEEWVDEFVCDANVDYNKLFKKD*
Ga0126377_109541521	3300010362	Tropical Forest Soil	KFKKLENGNLQYEVTVEDPNVWVSPWVIPPRTFQRQRQTEFVSEFVCDAPPIDYQKLFGKD*
Ga0126377_112119372	3300010362	Tropical Forest Soil	VTVEDPNVWVSPWAIPARTFNLRRETEFVSEFVCDAPVIDYQKLFGK*
Ga0134121_116997632	3300010401	Terrestrial Soil	LPYEVTVEDPNVWQTPWVIPARTFPRRPEVEFISEFVCEPRTDYQRLFKKD*
Ga0134123_101924642	3300010403	Terrestrial Soil	DVTVDDPNVWEKPWVIPARTFALRPEIEFVSEFVCESTVDYQRLFKR*
Ga0137428_10885542	3300011432	Soil	ENGSLQYDVTVEDPNVWETPWAIPARTFPFRPEIEFVSEFVCESTVDYSRLFKKE*
Ga0150985_1062784712	3300012212	Avena Fatua Rhizosphere	EKFKKLENGNLQYEVTVEDPNVWVGPWAIPARTFQHRPETEYVSEFVCDAPVVDYQKLFGK*
Ga0150985_1114539983	3300012212	Avena Fatua Rhizosphere	VEDPNVWQTPWKIAARTFPRRPELENVSEFVCESTVDYQRLFKQ*
Ga0137368_106194542	3300012358	Vadose Zone Soil	YDVTVEDPNLWQTPWVIPARTFPRRPEVEFISEFVCEPRTDYQRLFKKE*
Ga0150984_1100765371	3300012469	Avena Fatua Rhizosphere	LENGNLQYEVTVEDPNVWVSPWAIPARTFQHRPETEYVSEFVCDAPVVDYQKLFGK*
Ga0150984_1154142691	3300012469	Avena Fatua Rhizosphere	GNLQYDVTVEDPNVWAGPWVIPARTFTYKPEAEWVEEFICDANVDYNKLFKKE*
Ga0150984_1177630811	3300012469	Avena Fatua Rhizosphere	PDGNLQYEVTVEDPNVWQNPWKIAARTFPRRQELENVSEFVCESTVDYQRLFKQ*
Ga0157332_10756392	3300012511	Soil	RKLENGNLQYDVTVEAPNVWETPWAIPARTFAFRPEFAFVSEFVCESTVDYQRLFKK*
Ga0137373_105961782	3300012532	Vadose Zone Soil	RFRRLENGNLQYDVTVEDPNLWQTPWVIPARTFPRRPEVEFISEFVCEPRTDYQRLFKKE
Ga0157299_101015522	3300012899	Soil	GNLQYSVTVEDPNVWQDPWVIPPRTFQRRPELENVAEFVCESTVDYQRLFKK*
Ga0157296_100318971	3300012905	Soil	VTVDDPNVWEQPWAIAPRTFPLRPELEFVAEFVCESTVDYQRLFKK*
Ga0157297_100272753	3300012914	Soil	YEVTVDDPNVWEQPWAIAPRTFPLRPELEFVAEFVCESTVDYQRLFKK*
Ga0126369_105892903	3300012971	Tropical Forest Soil	YDVTVEDPNVWVSSWVIPTRTFTRRPEADWVEEFVCESNIDYNRLFKKEDGK*
Ga0157374_112191742	3300013296	Miscanthus Rhizosphere	AVNEKFKKRDNGNLQYGVTVEDPNVGVRPWAIPARTFQHRPETEYVSEFVCDAPVVDYQKLFGK*
Ga0157375_107256701	3300013308	Miscanthus Rhizosphere	VTVEDPNVWVRPWAIPARTFQRRPETEYVSEFVCDAPVVDYQKLFGK*
Ga0157375_113557151	3300013308	Miscanthus Rhizosphere	KLDNGNLQYEVTVEDPNVWVRPWAIPARTFQHRPETEYVSEFVCDAPVVDYQKLFGK*
Ga0157375_114586881	3300013308	Miscanthus Rhizosphere	VTVEDPNVWQTPWVIPARTFQRRQELENVAEFVCESTVDYQRLFKK*
Ga0157375_130450641	3300013308	Miscanthus Rhizosphere	NGSLQYEVTVEDPNVWVRPWVIPARTFPLRPEAEYVSEFVCDAPVVDYQKLFGKDKD*
Ga0075327_12400562	3300014272	Natural And Restored Wetlands	LPDGSLQYDVTVEDPNVWQTPWVIPARTFRFRPELEFVSEFVCESTVDYTRLFKKD*
Ga0157377_113433881	3300014745	Miscanthus Rhizosphere	VTVEDPNVWQTPWLIPARTFQRRQALENVAEFVCESTVDYQRLF*
Ga0157376_100836881	3300014969	Miscanthus Rhizosphere	RLQPDGNLQYEVTVEDPNVWQNPWKIAPRTFQRRPELDNVAEFVCESTVDYQRLFKQ*
Ga0173478_102953212	3300015201	Soil	LLPDGNLQYDVTVEDPNVWQTPWLIPARTFQRRQELENVAEFVCESTVDYQRLFKK*
Ga0137409_115105242	3300015245	Vadose Zone Soil	TVEDPNVWVRPWAIPARTFQHRPETEYVSEFVCDAPVVDYQKLFGK*
Ga0132256_1001046951	3300015372	Arabidopsis Rhizosphere	RKLENGNLQYDVTVEDPNVWQTPWVIPARTFAFRPEFETVSEFVCESTVDYQRLFKK*
Ga0132257_1017641841	3300015373	Arabidopsis Rhizosphere	TVEDPNVWQTPWVIPPRTFQRRAELENVSEFVCESTVDYQRLFKK*
Ga0132255_1037323842	3300015374	Arabidopsis Rhizosphere	VIEKFKKLENGNLQYEVTVEDPNVWVAPWAIPARTFQRQAQAEFVSEFVCDAPAVDYQKLFGKD*
Ga0182035_111802321	3300016341	Soil	RFKRLENGNLQYDVTVEDPNVWMGPWIIPTRTFTYRPESEWVEEFVCDANVDYNKLFKKD
Ga0184627_101946273	3300018079	Groundwater Sediment	GSLQYDVTVEDSNVWEKPWVIPTRTFALRPELEYVSEFVCESTVD
Ga0066655_114250571	3300018431	Grasslands Soil	NGNLQYDVTVEDPNLWQTPWVIPARTFPRRPEVEFISEFVCEPRTDYQRLFKKE
Ga0190275_120754751	3300018432	Soil	TVEDPNVWEKPWVIPPRTFALRPEMEFVSEFVCESTVDYGKLFK
Ga0190270_105288931	3300018469	Soil	ERFRLLPDGNLQYGVMVDDPNVWQDPWVIPPRTFQRRPELENVAEFVCESSVDYQRLFKK
Ga0190264_109801062	3300019377	Soil	EDPNVWEGPWVIPARTFPLRPEVEFVSEFVCESTVDYGRLFKK
Ga0247746_11747101	3300022886	Soil	RKLENGSLQYEVTVDDPNVWEQPWAIAPRTFPLRPELEFVAEFVCESTVDYQRLFKK
Ga0247784_10790821	3300023270	Plant Litter	FKKLENGNLQYDVTVQDPNVWVSPWVIPARTFQLRPEAEYVSEFVCDAPAVDYQKLFGKP
Ga0207680_101901671	3300025903	Switchgrass Rhizosphere	EVTVEDPNVWTTPWVIPARTFAGRPELDSVAEFVCESRVDYSKMFKK
Ga0207701_113602752	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	LQYDVTVEDPNVWETPWVIPARTFPFRPELEFVSEFVCESTVDYQRLFKKN
Ga0207644_110292271	3300025931	Switchgrass Rhizosphere	RFKTLDNGSLQYEVTVEDPNVWVKPWVIPARTFPLRKETEFVSEFVCDAPVVDYQKLFGN
Ga0207704_110981801	3300025938	Miscanthus Rhizosphere	KKLENGSLQYEVTVEDPNVWVRPWVIPARTFALRAETEYVSEFVCDAPVVDYQKLFEKK
Ga0207679_119188332	3300025945	Corn Rhizosphere	QYEVTVEDPNVWQNPWKIAARTFPRRQELENVSEFVCESTVDYQRLFKQ
Ga0207658_119877361	3300025986	Switchgrass Rhizosphere	SLQYEVTVDDPNVWEQPWAIAPRTFPLRPELEFVAEFVCESTVDYQRLFKK
Ga0207641_116860613	3300026088	Switchgrass Rhizosphere	EDPNVWQNPWKIAARTFPRRPELENVSEFVCESTVDYQRLFKR
Ga0209387_10840021	3300027639	Agricultural Soil	VADPNAWQTPWTIPPRTFQRRPEENVAEFVCESTVDYQRLYKK
Ga0209485_11627032	3300027691	Agricultural Soil	RFRRLDNGSLQYDVTVEDPNVWEKPWVIPSRTFAFRPELEFVSEFVCESSVDYNRLFKKD
Ga0207428_104491081	3300027907	Populus Rhizosphere	RFRKLENGSLQYEVTVEDPNVWEQPWAIPPRTFPLRPELEFVAEFVCESTVDYQRLFKK
Ga0209382_109227702	3300027909	Populus Rhizosphere	ELQYDVTVEDPNVWEKPWVIPARTFPYRPELEFVSEFVCESTVDYQRLFKK
Ga0247819_102692991	3300028608	Soil	LQYGVTVEDPNVWQTPWVIPVRTFTRRAELENVSEFVCESRVDYQRLFKK
Ga0307503_106767742	3300028802	Soil	LQYDVTVEDPNVWQTPWVIPARTFPRRAELENVSEFVCESTVDYQRLFKR
Ga0170824_1245294441	3300031231	Forest Soil	GNLQYEVTVEDPNVWVSPWAIPARTFQHRPETEYVSEFVCDAPVVDYQKLFGK
Ga0265342_106665601	3300031712	Rhizosphere	IERYRRLENGSLQYDVTVEDPNVWGSPWVMPQRTFAFRPDLETVDEFVCESNPDYGKLFKKD
Ga0307413_117588621	3300031824	Rhizosphere	DPNVWDGPWKIAPRTFAYRPEIEFVSEFVCESRVDYSRLFKQ
Ga0310907_105118712	3300031847	Soil	VEDPNVWQTPWVIPVRTFTRRAELENVSEFVCESRVDYQRLFKK
Ga0310912_106141353	3300031941	Soil	QYDVMVEDPNVWTGPWVIPTRTFTYRPEAEWVEEFVCDATVDYNKLFKKE
Ga0310885_108913721	3300031943	Soil	SLQYDVTVEDPNVWETPWVIPPRTFPFRPELEFVSEFVCESTVDYQRLFKKN
Ga0310884_106990881	3300031944	Soil	ENGNLQYDVTVEDPNVWAAPWVIPSRTFTHRPEAEWVDEFVCDAPPVDYQKLLGKD
Ga0310909_101643671	3300031947	Soil	NLQYDVMVEDPNVWTGPWVIPTRTFTYRPEAEWVEEFVCDATVDYNKLFKKE
Ga0307414_101599223	3300032004	Rhizosphere	LLPDGNLQYDVTVEDPNVWQTPWAIPSRTFQRRPEENVAEFVCESSVDYQRLYKK
Ga0307411_122400981	3300032005	Rhizosphere	VTVEDPNVWDGPWKIAPRTFAYRPEIEFVSEFVCESRVDYSRLFKQ
Ga0310902_103243151	3300032012	Soil	DGNLQYEVTVEDPNVWQTPWAIPMRTFQRRPEENVAEFVCESRVDYQRLFKK
Ga0306924_108558441	3300032076	Soil	GNLQYDVMVEDPNVWTGPWVIPTRTFTYRPEAEWVEEFVCDATVDYNKLFKKE
Ga0307471_1012501621	3300032180	Hardwood Forest Soil	EVTVEDPNVWASPWAIPARTFQVRPEAEFVSEFVCDAPAVDYQKLFGKD
Ga0310810_104194961	3300033412	Soil	SLQYDVTVEDPNVWQTAWVIPTRTFARRAELENVSEFVCESTVDYSKLFKKAQ
Ga0314781_040564_3_185	3300034660	Soil	RFRRLENGSLQYDVTVEDPNVWETPWVIPPRTFPFRPELEFVSEFVCESTVDYQRLFKKN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087948

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences