Basic Information | |
---|---|
Family ID | F087895 |
Family Type | Metagenome |
Number of Sequences | 110 |
Average Sequence Length | 50 residues |
Representative Sequence | MSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKTKADY |
Number of Associated Samples | 93 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 23.64 % |
% of genes near scaffold ends (potentially truncated) | 99.09 % |
% of genes from short scaffolds (< 2000 bps) | 92.73 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.34 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (56.364 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (36.364 % of family members) |
Environment Ontology (ENVO) | Unclassified (82.727 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (86.364 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72 |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 22.67% β-sheet: 0.00% Coil/Unstructured: 77.33% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.34 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Freshwater Marine Marine Surface Seawater Aqueous Sackhole Brine Freshwater To Marine Saline Gradient Marine Sea-Ice Brine Marine Salt Marsh Marine Estuarine Water Pelagic Marine Seawater Pelagic Marine Marine Seawater Saline Lake Pond Water Sediment |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSpr2010_102126242 | 3300000116 | Marine | MSKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGGITK |
JGI20160J14292_101061402 | 3300001349 | Pelagic Marine | MAKAIKTVKEKSQLQSLLSKITKGKSLLQQWIELDPIYVGEKNSADYEQSIHRHLMDSAEQIR |
JGI24006J15134_100759281 | 3300001450 | Marine | MSKAIKTVKSKSQLQSLLSNISKGKSLLQQWIELDPIYVGEK |
JGI24005J15628_100974401 | 3300001589 | Marine | MAKWIRTVKKKSQLKSLLSTVSQGKELLRKWIELDPIYVGERTSADYEQSIHKHLLDSV |
GOS2218_10025721 | 3300001947 | Marine | MSKKIKTVKTKKELQSLLVNIRKGKDLLKQWIDLDPIYVGEKTKANYVESIHKQLLESTK |
Ga0066830_100105361 | 3300005433 | Marine | MAKAIKTVKEKSQLETLLSGIDKGKTLLQQWINLDPIYVGEKKSADYEKSI |
Ga0075479_102440521 | 3300006870 | Aqueous | MVKKIKTVKGKEELQSLLSTVSRGKELLQEWINLDPIYVGERTSANYEL |
Ga0075468_102184351 | 3300007229 | Aqueous | MAKAIKTVKEKSQLQSLLSKISKGKPLLQQWIDLDPIYVG |
Ga0102960_11411211 | 3300009000 | Pond Water | MAKAIKTVKEKSQLLSLLKNISKGKDLLRDWINLEPIYVGKKTSADYTYSIQKHLLESV |
Ga0102963_13349851 | 3300009001 | Pond Water | MAKTIKTVKDKTKLQSLLVGVAKGRDLLQSWINLDPIYVGHISSAEYEES |
Ga0115552_10861293 | 3300009077 | Pelagic Marine | MPKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGGI |
Ga0115552_11375572 | 3300009077 | Pelagic Marine | MSKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGGI |
Ga0118687_103278792 | 3300009124 | Sediment | MYMAKAIKTVKEKSQLQSLLLGVEKGKTLLEDWIALDPIY |
Ga0114995_100930571 | 3300009172 | Marine | VSKAINTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKTKADY |
Ga0114996_101508611 | 3300009173 | Marine | MAKAIKTVKEKLQLQSLLLKISKGKSLLQQWIELDPIYVGEKTKADYGESIHKH |
Ga0114996_110670542 | 3300009173 | Marine | MAKTIRTVKEKSQLKSLLSTVSQGKELLSKWIELDPIYVGERTSADYE |
Ga0114993_108487402 | 3300009409 | Marine | MAKAIKTVKEKSQLQSLLSKISKGKSLLQQWIELDPI |
Ga0114998_101761081 | 3300009422 | Marine | MSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKTKADY |
Ga0114998_102621911 | 3300009422 | Marine | MAKAIKIVKEKSQLQSLLSKISKGKSLLQQWIDLDPIYVGEKNSAD |
Ga0114997_103687803 | 3300009425 | Marine | MSKAIKTVKEKSQLQSLLSGITNGKELLQEWIDLDPVYVGERTSANYAMSIRQHLLDSVKEV |
Ga0114997_105016852 | 3300009425 | Marine | MAKTIRTVKEKSQLRSLLSTVSQGKELLSKWIELDPIYVGERTSADYEQSI |
Ga0115570_101949012 | 3300009496 | Pelagic Marine | MPKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGGITKANYLESIHK |
Ga0115570_103519182 | 3300009496 | Pelagic Marine | MSKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGG |
Ga0115570_104920702 | 3300009496 | Pelagic Marine | MVKAIKTVKTRSQLQSLLSGVDKGKALLEEWIALDPIYVGEKNSADYEQSIHRHLIESTE |
Ga0115568_104570561 | 3300009498 | Pelagic Marine | MAKAIKTVKEKLQLQSLLSKISKGKSLLQQWIELDPI |
Ga0115002_104281411 | 3300009706 | Marine | MSKAIKTVKSKSQLQSLLSNISKGKSLLQQWIELDPIYVG |
Ga0115001_108981711 | 3300009785 | Marine | VSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKTKADY |
Ga0163109_108512791 | 3300012936 | Surface Seawater | MAKAIKTVKEKKELQSLLSTITTGKDLLRSWIDLDPIYVGEKTSANYE |
Ga0163109_113993131 | 3300012936 | Surface Seawater | MSKSIKTVKTRSQLQSLLSNINEGRELLNEWIDLDPIFVGEKTKANYLE |
Ga0163111_103411762 | 3300012954 | Surface Seawater | MAKAIKTVKEKSQLETLLSGIDKGKTLLQQWINLDPIYVGEKKSADYEKSIHRHLL |
Ga0134299_10336891 | 3300014959 | Marine | MSKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPI |
Ga0180120_100409141 | 3300017697 | Freshwater To Marine Saline Gradient | MVKKIKTVKGKEELQSLLSTVSRGKELLQEWINLDPIYVGERTSANYELSIHKHLIDSTKEI |
Ga0181377_10987492 | 3300017706 | Marine | MAKAINTVKDKSQVQSLLSKISKGKNLLSQWIDLDPIYVGEKTKADYKESIHKQLIESTQ |
Ga0181412_11196772 | 3300017714 | Seawater | MTKAIKSVKEKTQLQSLLSNVSKGKELLQDWINLEPIYVGKKTSADY |
Ga0181383_10921252 | 3300017720 | Seawater | MAKAIKTVKEKSQLQSLLSKITIGKSLLQQWIELDPIYVGEKNSADYEQSIHRHLMDSAE |
Ga0181388_10463571 | 3300017724 | Seawater | MAKAIKTVKEKSQLHSLISSVTKGQELLRDWIDLEPIYVGKKTSAD |
Ga0181388_11138042 | 3300017724 | Seawater | MAKAIKTVKEKSQLQSLLSKITKGKSLLQQWIELDPIYVGE |
Ga0181398_10292403 | 3300017725 | Seawater | MSKSIKTVKTSSQLQSLLSNISNGKELLKEWIDLDPIFVGEKTKANY |
Ga0181401_10634922 | 3300017727 | Seawater | MAKAIKTVKEKSQLQSLLSKITKGKSLLQQWIELDPIYVGEKNSADYEQSIHRHLMDSAEQI |
Ga0181415_11148082 | 3300017732 | Seawater | MSKAIKTVKEKKQLQPLLSTITAGKDLLKSWIDLDPIYVGEKTS |
Ga0181431_11578912 | 3300017735 | Seawater | MTKAIKSVKEKTQLQSLLSNVSKGKELLQDWINLEP |
Ga0181389_10506764 | 3300017746 | Seawater | MSKAIKTVKEKSQLQSLLLGITNGKELLQEWIDLDPVYVGKRTSADY |
Ga0181405_10662922 | 3300017750 | Seawater | MAKWIRTVKKKSQLKSLLSTVSQGKELLRKWIELDPIYVGERTSADYEQSIHKHLLDSVKEVTVDG |
Ga0181407_10256475 | 3300017753 | Seawater | MSKAIKTVKEKSQLQSLLLGIKNGKELLQEWIDLDPVYVGKRTSADYEQSIHKHLLD |
Ga0181407_11323851 | 3300017753 | Seawater | MAKWIRTVKKKSQLKSLLSTVSQGKELLRKWIELDPIYVGERTSADYEQSIHKHLLD |
Ga0181409_10687391 | 3300017758 | Seawater | MSKKIKTVKEKLQLKSLLSTIGKGKDLLQDWISLDPIYV |
Ga0181414_11299881 | 3300017759 | Seawater | MSKAIKTVKEKKQLQPLLSTITAGKDLLKSWIDLDPIYVGEKTSANYELSIHKHLIEST |
Ga0181385_10268264 | 3300017764 | Seawater | MSKKIKTVKSKSQLQSLLSTISKGKDLLNQWIKLDPIYVGEKTKANYVESIHK |
Ga0181413_10202565 | 3300017765 | Seawater | MSKAIKTVKEKSQLQSLLLGITNGKELLQEWIDLDPVYVGKRTSADYEQSIHKHLLD |
Ga0181406_10192601 | 3300017767 | Seawater | MSKAIKTVKEKSQLQSLLLGITNGKELLQEWIDLDPVYVGERTSADYE |
Ga0181406_12375922 | 3300017767 | Seawater | MSKKIKTVKSKSQLQTLLFKVSKGKDLLDQWIDLDPIFVGEKQS |
Ga0187217_10188134 | 3300017770 | Seawater | MAKAIKTVKEKSQLHSLISSVTKGQELLRDWIDLEPIY |
Ga0181379_10936483 | 3300017783 | Seawater | MAKAIKTVKAKSQLQSLLSCVGKGKELLQDWINLEPIYVGKKTS |
Ga0181424_101746671 | 3300017786 | Seawater | MSKKIKTVKSKSQLQTLLSKVSKGKDLLNQWIELDPIFVGEQQSADYMMSIHKHLL |
Ga0181568_110433701 | 3300018428 | Salt Marsh | VSKAIKTVKSKSQLQSLLSGVEKGKTLLEDWIALDPIYVGKSTSANYRE |
Ga0194024_10435253 | 3300019765 | Freshwater | MVKAIKTVKTRSQLQSLLSGVDKGKALLEEWIALDPIYVGEKNSADYEQ |
Ga0181575_107172691 | 3300020055 | Salt Marsh | MAKAIKTVKNKLQLQSLLVGIEEGRELLEQWINLDPIYKGEITSADYRASIH |
Ga0181574_103697711 | 3300020056 | Salt Marsh | MSKKIKTVKGKEQLQSLLSTISRGKELLQDWIDLEPIFAGKK |
Ga0206130_103801452 | 3300020187 | Seawater | MAKAIKTVKEKSQLQSLLSKITKGKSLLQQWIELDPIYVGEKNSADYEQS |
Ga0181597_103423452 | 3300020194 | Salt Marsh | MAKAIKTVKEKSQLQSLLSGVEKGKTLLEDWIALDPIYVGKSTSANYRESIH |
Ga0211663_10567092 | 3300020292 | Marine | MAKAIKTVKEKKELQSLLSTITTGKDLLRSWIDLDPIYVGEKTSANYELSIHK |
Ga0211576_102103052 | 3300020438 | Marine | MAKAIKTVKEKSQLHSLISSVTKGQELLRDWIDLEPIYVGKKTSE |
Ga0211518_101522722 | 3300020440 | Marine | MSKKIKTVKNKSELQSLLSKVSKGKELLHQWIDLDPIFVGETQSADYMMSIRK |
Ga0222716_101172094 | 3300021959 | Estuarine Water | MVKAIKTVKTRSQLQSLLSGVDKGKALLEEWIALDPIYVGEKNSANYEQS |
Ga0222716_105506702 | 3300021959 | Estuarine Water | MAKPIRTVKSKLQLQSLLQGIDAGKELLQSWINLEPIYVGQKTSAE |
Ga0222719_107715822 | 3300021964 | Estuarine Water | MYMAKAIKTVKEKSQLQSLLLGVEKGKTLLEDWIALDP |
Ga0255753_13879052 | 3300022926 | Salt Marsh | MVKAIKTVKTRSQLQSLLSGVDKGKALLEEWIALDPIYVGEKNSADY |
Ga0255766_101012554 | 3300023172 | Salt Marsh | MVKAIKTVKTRSQLQSLLSDVNKGKALLEEWIALDPIYVGEKNSADYEQSIHRHLIES |
Ga0207905_10537791 | 3300025048 | Marine | MAKAIKTVKEKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKNSADYKQSIHRHLLDSTEQV |
Ga0208669_10815301 | 3300025099 | Marine | MSKAINTVKDKSQLQSLLSKISKGKNLLSQWITLD |
Ga0209535_11066652 | 3300025120 | Marine | MAKAIKTVKEKSQLQSLLSKISKGKPLLQQWIDLDPIYVGKK |
Ga0209535_11107591 | 3300025120 | Marine | MAKTIRTVKEKSQLKSLLSTVSQGKELLSKWIELDPIYVGERTSADYEQSIHKHLLESVKEVTVNG |
Ga0209348_11826462 | 3300025127 | Marine | MTKKIKTVKEKKQLQKLLSTISQGKDLLQDWINLEPIYVGEKTSADYTSSIQKHLLDSVKEV |
Ga0209336_100816701 | 3300025137 | Marine | MSKAIKTVKEKSQLQSLLLGITNGKELLQEWIDLDPVYVGKRTSADYEQSIHKHLLDSVKKVTVDGHWC |
Ga0209634_10931983 | 3300025138 | Marine | MAKWIRTVKKKSQLKSLLSTVSQGKELLSKWIELDPIYVGERTSADYEQSIHKH |
Ga0209634_11317551 | 3300025138 | Marine | MAKTIRTVKEKSQLRSLLSTVSQGKELLSKWIELDPIYVGERTSADY |
Ga0209337_10236266 | 3300025168 | Marine | MAKWIRTVKKKSQLKSLLSTVSQGKELLSKWIELDPIYVGERTSADYEQSIHKHLLDSVK |
Ga0208646_10840121 | 3300025425 | Saline Lake | MSKAIKTVKSKGQLKRLLENTTGTGRELLEQWIALDPIYVGEPTSADYKQSIHR |
Ga0209196_10501051 | 3300025654 | Pelagic Marine | MAKAIKTVKEKSQLQSLLSKITKGKSLLQQWIDLDPIYVGEKNSADYEQSIHRHLMDS |
Ga0209306_12248261 | 3300025680 | Pelagic Marine | MPKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGGITKA |
Ga0209406_10112015 | 3300025694 | Pelagic Marine | MAKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDP |
Ga0209532_10802013 | 3300025696 | Pelagic Marine | MVKAIKTVKTRSQLQSLLSGVDKGKALLEEWIALDPIYVGEKNSADYEQSIHRHLIESTEQVTLQ |
Ga0209715_11874862 | 3300025699 | Pelagic Marine | MAKAIKTVKEKLQLQSLLSKITKGKSLLQQWIELDPIYVGEKNSADYEQSIHRHLMDSAE |
Ga0208767_12794422 | 3300025769 | Aqueous | MVKKIKTVKGKEELQSLLSTVSRGKELLQEWINLDPIYVGERTSANYELSIHKH |
Ga0208542_10673223 | 3300025818 | Aqueous | MVKAIKTVKTRSQLQSLLSDVNKGKALLEEWIALDPIYVGEKNSADYEQSIHRHLIESTEQVT |
Ga0209119_11765821 | 3300025860 | Pelagic Marine | MSKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGGKTKANYLESIHKQ |
Ga0209632_101058031 | 3300025886 | Pelagic Marine | MAKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPI |
Ga0209335_100870393 | 3300025894 | Pelagic Marine | MAKAINTVKDKSQLQSLLSKISKGKNLLSQWITLDPIYVGGITKANYLESIHKQLIEST |
Ga0209929_10932682 | 3300026187 | Pond Water | MYMAKAIKTVKEKSQLQSLLSGVEKGKTLLEDWIALDPIYVGKSTSANYRESIHIWC |
Ga0208407_10916232 | 3300026257 | Marine | MAKAIKTVKEKSQLETLLSGIDKGKTLLQQWINLDPIYVGEKKSADYEKS |
Ga0209710_12391302 | 3300027687 | Marine | MSKAIKTVKGKEQLKELLKSTAGTGRELLEQWIALDPIYVGERTSADYEQSIHRHLVES |
Ga0209192_100362643 | 3300027752 | Marine | VSKAINTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKTKADYG |
Ga0209192_101341951 | 3300027752 | Marine | MSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEK |
Ga0209192_101357091 | 3300027752 | Marine | VSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEK |
Ga0209192_101543142 | 3300027752 | Marine | MAKAIKTVKEKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKNSADYK |
Ga0209709_101528621 | 3300027779 | Marine | VSKAIKTVKSKGQLKRLLVNTSGTGRELLEQWIALDPIYVGEPTSADYK |
Ga0209502_101378913 | 3300027780 | Marine | MSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKTKADYGKSI |
Ga0209091_101113671 | 3300027801 | Marine | MAKAIKIVKEKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKNSADYK |
Ga0209402_102769153 | 3300027847 | Marine | MSKAIKTVKSKSQLQSLLLKISKGKSLLQQWIELDPIYVGEKTKADYGKSIHKHL |
Ga0256368_10395962 | 3300028125 | Sea-Ice Brine | MSKAIKTVKSKSQLQSLLSNISKGKSLLQQWIELDPIYVGEKTKADYGKSIHKHL |
Ga0257110_13359161 | 3300028197 | Marine | MAKAIKTVKEKSQLQSLLSKIIKGRSLLQQWIDLDPIYVGEKNSADYEQSIHKHLLDSAD |
Ga0183755_10179181 | 3300029448 | Marine | MAKKIKTVKGKEQLQSLLSTISRGKNLLQDWIDLEPIYVGEETSANYT |
Ga0307488_103327241 | 3300031519 | Sackhole Brine | MSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELD |
Ga0302137_13122401 | 3300031588 | Marine | MSKAIKTVKSKSQLQSLLLKISKGKSLLQQWIELDPIYVGEKTKADYGESIHKHLIESAD |
Ga0302132_101263763 | 3300031605 | Marine | MSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGEKTKADYGKSIH |
Ga0302123_104703702 | 3300031623 | Marine | MAKAIKTVKEKSQLQSLLSKISKGKSLLQQWIELDPIYVG |
Ga0302135_101184273 | 3300031625 | Marine | MSKAIKTVKSKSQLQSLLSNISKGKSLLQQWIELDPIYVGGKTKADY |
Ga0302135_103841631 | 3300031625 | Marine | MAKAIKTVKEKSQLQSLLSKISKGKPLLQQWIDLDHIYV |
Ga0302121_101035551 | 3300031626 | Marine | MSKAIKTVKEKSQLQSLLSGITNGKELLQEWIDLDPVYVGER |
Ga0302138_100738143 | 3300031637 | Marine | MSKAIKTVKSKSQLQSLLSKISKGKSLLQQWIELDPIYVGE |
⦗Top⦘ |