NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F087847

Metagenome Family F087847

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F087847
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 55 residues
Representative Sequence MPKRSVTFEQFKKALAEYYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
Number of Associated Samples 25
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 76.36 %
% of genes near scaffold ends (potentially truncated) 14.55 %
% of genes from short scaffolds (< 2000 bps) 60.00 %
Associated GOLD sequencing projects 23
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (53.636 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(76.364 % of family members)
Environment Ontology (ENVO) Unclassified
(87.273 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(68.182 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.48%    β-sheet: 0.00%    Coil/Unstructured: 59.52%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF01555N6_N4_Mtase 8.18
PF09719C_GCAxxG_C_C 3.64
PF01909NTP_transf_2 3.64
PF13589HATPase_c_3 3.64
PF00571CBS 1.82
PF00535Glycos_transf_2 1.82
PF01850PIN 1.82
PF10049DUF2283 1.82
PF16199Radical_SAM_C 1.82
PF01918Alba 1.82
PF01878EVE 1.82
PF01638HxlR 0.91
PF13175AAA_15 0.91
PF03484B5 0.91
PF13641Glyco_tranf_2_3 0.91
PF13520AA_permease_2 0.91
PF02074Peptidase_M32 0.91
PF01934HepT-like 0.91
PF05942PaREP1 0.91
PF00026Asp 0.91
PF13419HAD_2 0.91
PF00710Asparaginase 0.91
PF01978TrmB 0.91
PF01467CTP_transf_like 0.91
PF04008Adenosine_kin 0.91
PF00528BPD_transp_1 0.91
PF04480DUF559 0.91
PF13302Acetyltransf_3 0.91
PF07705CARDB 0.91
PF00145DNA_methylase 0.91
PF02080TrkA_C 0.91
PF03060NMO 0.91
PF00994MoCF_biosynth 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0863DNA modification methylaseReplication, recombination and repair [L] 8.18
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 8.18
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 8.18
COG0252L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit DTranslation, ribosomal structure and biogenesis [J] 1.82
COG1581DNA/RNA-binding protein AlbA/Ssh10bTranscription [K] 1.82
COG1673Predicted RNA-binding protein, contains PUA-like EVE domainGeneral function prediction only [R] 1.82
COG2947Predicted RNA-binding protein, contains EVE domainGeneral function prediction only [R] 1.82
COG0072Phenylalanyl-tRNA synthetase beta subunitTranslation, ribosomal structure and biogenesis [J] 0.91
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.91
COG0516IMP dehydrogenase/GMP reductaseNucleotide transport and metabolism [F] 0.91
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.91
COG1839Adenosine/AMP kinaseNucleotide transport and metabolism [F] 0.91
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.91
COG2317Zn-dependent carboxypeptidase, M32 familyPosttranslational modification, protein turnover, chaperones [O] 0.91
COG2361HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 0.91
COG2445Uncharacterized HEPN domain protein YutE, UPF0331/DUF86 familyGeneral function prediction only [R] 0.91


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A53.64 %
All OrganismsrootAll Organisms46.36 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001782|WOR52_10004437All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota21913Open in IMG/M
3300009943|Ga0117933_1351123Not Available724Open in IMG/M
3300010284|Ga0129301_1092326All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon600Open in IMG/M
3300010324|Ga0129297_10079321All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermofilales → Thermofilaceae → Thermofilum → Thermofilum adornatum1556Open in IMG/M
3300010324|Ga0129297_10325242Not Available690Open in IMG/M
3300010324|Ga0129297_10357044Not Available654Open in IMG/M
3300010324|Ga0129297_10412354Not Available602Open in IMG/M
3300010324|Ga0129297_10469721Not Available556Open in IMG/M
3300010324|Ga0129297_10493271Not Available539Open in IMG/M
3300010328|Ga0129298_10096040All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1405Open in IMG/M
3300010328|Ga0129298_10104063All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1344Open in IMG/M
3300010328|Ga0129298_10281023Not Available770Open in IMG/M
3300010328|Ga0129298_10382411All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota648Open in IMG/M
3300012931|Ga0153915_11074852All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon938Open in IMG/M
(restricted) 3300013127|Ga0172365_10015424All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota5516Open in IMG/M
(restricted) 3300013127|Ga0172365_10023708All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon4329Open in IMG/M
(restricted) 3300013127|Ga0172365_10038431Not Available3256Open in IMG/M
(restricted) 3300013127|Ga0172365_10045985All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon2928Open in IMG/M
(restricted) 3300013127|Ga0172365_10082347Not Available2073Open in IMG/M
(restricted) 3300013127|Ga0172365_10103480All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1815Open in IMG/M
(restricted) 3300013127|Ga0172365_10815835All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon525Open in IMG/M
(restricted) 3300013128|Ga0172366_10695946All Organisms → cellular organisms → Archaea596Open in IMG/M
(restricted) 3300013129|Ga0172364_10122989All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1790Open in IMG/M
(restricted) 3300013133|Ga0172362_10744315Not Available655Open in IMG/M
3300022548|Ga0212092_1270247All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon600Open in IMG/M
3300022551|Ga0212089_10094221All Organisms → cellular organisms → Archaea → Euryarchaeota1618Open in IMG/M
3300022551|Ga0212089_10128965Not Available1315Open in IMG/M
3300022551|Ga0212089_10313937Not Available732Open in IMG/M
3300022551|Ga0212089_10471476Not Available560Open in IMG/M
3300022551|Ga0212089_10560579Not Available501Open in IMG/M
3300025143|Ga0209314_10302516Not Available501Open in IMG/M
3300025144|Ga0209725_1139829Not Available768Open in IMG/M
3300025146|Ga0209322_10034163Not Available2504Open in IMG/M
3300027893|Ga0209636_10388965All Organisms → cellular organisms → Archaea1191Open in IMG/M
3300027893|Ga0209636_10419193Not Available1133Open in IMG/M
3300027893|Ga0209636_10618792Not Available867Open in IMG/M
(restricted) 3300031587|Ga0315308_1000157All Organisms → cellular organisms → Archaea36206Open in IMG/M
(restricted) 3300031587|Ga0315308_1006981All Organisms → cellular organisms → Archaea → TACK group6106Open in IMG/M
(restricted) 3300031587|Ga0315308_1008301All Organisms → cellular organisms → Archaea → Euryarchaeota5552Open in IMG/M
(restricted) 3300031587|Ga0315308_1009479All Organisms → cellular organisms → Archaea5161Open in IMG/M
(restricted) 3300031587|Ga0315308_1014537Not Available4015Open in IMG/M
(restricted) 3300031587|Ga0315308_1016115All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3778Open in IMG/M
(restricted) 3300031587|Ga0315308_1017853All Organisms → cellular organisms → Bacteria3553Open in IMG/M
(restricted) 3300031587|Ga0315308_1024858Not Available2908Open in IMG/M
(restricted) 3300031587|Ga0315308_1028661Not Available2666Open in IMG/M
(restricted) 3300031587|Ga0315308_1032956All Organisms → cellular organisms → Archaea2444Open in IMG/M
(restricted) 3300031587|Ga0315308_1038275All Organisms → cellular organisms → Archaea2227Open in IMG/M
(restricted) 3300031587|Ga0315308_1067462All Organisms → cellular organisms → Archaea1547Open in IMG/M
(restricted) 3300031587|Ga0315308_1087848Not Available1299Open in IMG/M
(restricted) 3300031587|Ga0315308_1300278Not Available552Open in IMG/M
(restricted) 3300031593|Ga0315307_1096067Not Available1068Open in IMG/M
(restricted) 3300031593|Ga0315307_1118997Not Available932Open in IMG/M
(restricted) 3300031604|Ga0315309_1000312All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota29152Open in IMG/M
(restricted) 3300031604|Ga0315309_1029189Not Available2719Open in IMG/M
(restricted) 3300031604|Ga0315309_1037537All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae → Thermococcus → Thermococcus barophilus2329Open in IMG/M
(restricted) 3300031604|Ga0315309_1040986All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → unclassified Methanosarcinaceae → Methanosarcinaceae archaeon2205Open in IMG/M
(restricted) 3300031604|Ga0315309_1136776All Organisms → cellular organisms → Archaea1004Open in IMG/M
(restricted) 3300031604|Ga0315309_1160807Not Available899Open in IMG/M
(restricted) 3300031604|Ga0315309_1177276Not Available840Open in IMG/M
(restricted) 3300031604|Ga0315309_1178085Not Available838Open in IMG/M
(restricted) 3300031604|Ga0315309_1197434Not Available779Open in IMG/M
(restricted) 3300031604|Ga0315309_1359443Not Available503Open in IMG/M
(restricted) 3300031806|Ga0315306_10028008All Organisms → cellular organisms → Archaea2243Open in IMG/M
(restricted) 3300031806|Ga0315306_10097109Not Available1131Open in IMG/M
(restricted) 3300031806|Ga0315306_10155569Not Available861Open in IMG/M
(restricted) 3300031806|Ga0315306_10170100Not Available817Open in IMG/M
(restricted) 3300031806|Ga0315306_10240385Not Available662Open in IMG/M
(restricted) 3300031806|Ga0315306_10246922Not Available651Open in IMG/M
(restricted) 3300031806|Ga0315306_10305359Not Available570Open in IMG/M
(restricted) 3300031806|Ga0315306_10326792Not Available546Open in IMG/M
3300031862|Ga0315280_10055915All Organisms → cellular organisms → Archaea3285Open in IMG/M
3300031862|Ga0315280_10068551Not Available2793Open in IMG/M
3300031862|Ga0315280_10098454Not Available2079Open in IMG/M
3300031862|Ga0315280_10119722All Organisms → cellular organisms → Archaea1763Open in IMG/M
3300031862|Ga0315280_10193613All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1171Open in IMG/M
3300031862|Ga0315280_10224606Not Available1031Open in IMG/M
(restricted) 3300031876|Ga0315310_10006695Not Available7025Open in IMG/M
(restricted) 3300031876|Ga0315310_10007248All Organisms → cellular organisms → Archaea → Euryarchaeota6733Open in IMG/M
(restricted) 3300031876|Ga0315310_10027404Not Available3246Open in IMG/M
(restricted) 3300031876|Ga0315310_10033974All Organisms → cellular organisms → Bacteria2853Open in IMG/M
(restricted) 3300031876|Ga0315310_10052417All Organisms → cellular organisms → Bacteria2174Open in IMG/M
(restricted) 3300031876|Ga0315310_10052534All Organisms → cellular organisms → Bacteria2171Open in IMG/M
(restricted) 3300031876|Ga0315310_10142710Not Available1126Open in IMG/M
(restricted) 3300031876|Ga0315310_10221092Not Available838Open in IMG/M
(restricted) 3300031876|Ga0315310_10263633Not Available741Open in IMG/M
(restricted) 3300031876|Ga0315310_10303813Not Available672Open in IMG/M
(restricted) 3300031876|Ga0315310_10315355Not Available655Open in IMG/M
(restricted) 3300031876|Ga0315310_10330686Not Available634Open in IMG/M
(restricted) 3300031876|Ga0315310_10366826Not Available589Open in IMG/M
(restricted) 3300031877|Ga0315314_1000334All Organisms → cellular organisms → Archaea57380Open in IMG/M
(restricted) 3300031877|Ga0315314_1000546All Organisms → cellular organisms → Archaea40485Open in IMG/M
(restricted) 3300031877|Ga0315314_1015476All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota4646Open in IMG/M
(restricted) 3300031877|Ga0315314_1016922Not Available4369Open in IMG/M
(restricted) 3300031877|Ga0315314_1022468All Organisms → cellular organisms → Archaea3607Open in IMG/M
(restricted) 3300031877|Ga0315314_1025315All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota3319Open in IMG/M
(restricted) 3300031877|Ga0315314_1047258Not Available2123Open in IMG/M
(restricted) 3300031877|Ga0315314_1061157All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1756Open in IMG/M
(restricted) 3300031877|Ga0315314_1075630Not Available1499Open in IMG/M
(restricted) 3300031877|Ga0315314_1144827Not Available919Open in IMG/M
(restricted) 3300031877|Ga0315314_1206566Not Available699Open in IMG/M
(restricted) 3300031877|Ga0315314_1217474All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota672Open in IMG/M
(restricted) 3300031877|Ga0315314_1251656Not Available602Open in IMG/M
(restricted) 3300031877|Ga0315314_1300914Not Available526Open in IMG/M
(restricted) 3300031898|Ga0315312_1000020All Organisms → cellular organisms → Archaea363512Open in IMG/M
(restricted) 3300031898|Ga0315312_1010342All Organisms → cellular organisms → Archaea → Euryarchaeota → Thermococci → Thermococcales → Thermococcaceae4896Open in IMG/M
(restricted) 3300031898|Ga0315312_1011463All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium4577Open in IMG/M
(restricted) 3300031898|Ga0315312_1062979All Organisms → cellular organisms → Archaea → TACK group1322Open in IMG/M
3300032020|Ga0315296_10015966All Organisms → cellular organisms → Archaea5515Open in IMG/M
3300032020|Ga0315296_10040765Not Available3187Open in IMG/M
3300032020|Ga0315296_10090911All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1965Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment76.36%
Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment15.45%
Marine SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment2.73%
Hot Spring Microbial MatEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat1.82%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.91%
Marine SedimentEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment0.91%
Hot Spring Fe-Si SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Fe-Si Sediment0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.91%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001782Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_deep_samplesEnvironmentalOpen in IMG/M
3300009943Combined Assembly of Gp0139325, Gp0139347, Gp0139348EnvironmentalOpen in IMG/M
3300010284Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer H metaGEnvironmentalOpen in IMG/M
3300010324Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaGEnvironmentalOpen in IMG/M
3300010328Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaGEnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300013127 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cmEnvironmentalOpen in IMG/M
3300013128 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cmEnvironmentalOpen in IMG/M
3300013129 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cmEnvironmentalOpen in IMG/M
3300013133 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2EnvironmentalOpen in IMG/M
3300022548Cone Pool_combined assemblyEnvironmentalOpen in IMG/M
3300022551Boni_combined assemblyEnvironmentalOpen in IMG/M
3300025143Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I19B2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025144Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025146Soil microbial communities from Rifle, Colorado, USA - sediment 19ft 1EnvironmentalOpen in IMG/M
3300027893Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-52-54 (SPAdes)EnvironmentalOpen in IMG/M
3300031587 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP3EnvironmentalOpen in IMG/M
3300031593 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP2EnvironmentalOpen in IMG/M
3300031604 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP4EnvironmentalOpen in IMG/M
3300031806 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP1EnvironmentalOpen in IMG/M
3300031862Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40EnvironmentalOpen in IMG/M
3300031876 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP5EnvironmentalOpen in IMG/M
3300031877 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP9EnvironmentalOpen in IMG/M
3300031898 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP7EnvironmentalOpen in IMG/M
3300032020Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_18EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
WOR52_10004437233300001782Marine SedimentMPKRSITFEQFKKALANYYEEFTIGDQEQLTEQDLKDLYEDFLESDETLDDYLKHC*
Ga0117933_135112313300009943Hot Spring Fe-Si SedimentMTFEQFKKALAEHYEDFTVGYQEQLTEQDLKDLYEDFLESGKTLYEYSKDC*
Ga0129301_109232623300010284Hot Spring Microbial MatMTFKQFKKALAERYEDFTVGYQEQPTEQDLKDLYKDFLEPGKTLDEYSKDC*
Ga0129297_1007932113300010324Lake SedimentMPKRSITFKQFKKALAERYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLNEYSK
Ga0129297_1032524213300010324Lake SedimentMTFKQFKKALAKYYEDFTVGYQEQPTEQDLKDLYEDFLESGKTFDEYSKDC*
Ga0129297_1035704433300010324Lake SedimentMSFEQFKDELAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC*
Ga0129297_1041235423300010324Lake SedimentVPRRSLTFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLDSGKTLDEYLKPCEQEDNG*
Ga0129297_1046972123300010324Lake SedimentMPKRSVTFEQFKKALAERYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLD
Ga0129297_1049327113300010324Lake SedimentTFEQFKKALAEYYEDFTVGYQEQPTEQNLKDLYEDFLESGKTLDEYLKPCEQS*
Ga0129298_1009604023300010328Lake SedimentMLKRSITFEQFKEALAKHYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLDEYLKHCQQEGNG*
Ga0129298_1010406323300010328Lake SedimentMRKHCNNTAITFEQFKKALFEYYENFTIGYKEEHLTDQDIKGLYEDFLESDETLDEYLKHC*
Ga0129298_1028102323300010328Lake SedimentMPKRSVTFEQFKEALAKYYEDFTVGYQEQPTEQDLKDLYEDFLESGKTFDEYSKDC*
Ga0129298_1038241123300010328Lake SedimentMSFAQFKEELSKRFEDFTAGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC*
Ga0153915_1107485223300012931Freshwater WetlandsMTFEQFIEELAKYDEDFTVGYQEQPTEQDLKDLYADFLTSGKTFEEYAKEEDC*
(restricted) Ga0172365_1001542423300013127SedimentMPERSITFDQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLDSGETLDEYLKHC*
(restricted) Ga0172365_1002370823300013127SedimentMPKRSITFEQFKKALSKYYEDFTIGYREQQTEQDLKDLYEDFLESGETLDEYLKHC*
(restricted) Ga0172365_1003843113300013127SedimentMPERSITFDQFKKALAKYYEDFTIGYHEQPTEQDLKDLYEDFLESGEVLHEYLKHC*
(restricted) Ga0172365_1004598523300013127SedimentMPRCSITFEQFKEALAKYYEDFTIGYREQPTEQYLKVLYEDFLDSGETLDEYLKHC*
(restricted) Ga0172365_1008234723300013127SedimentVPERSIGFRQFKEALAKYYEDFTIGYREQLTEQNLKDLYRDFLESGEMLHEYLKHC*
(restricted) Ga0172365_1010348033300013127SedimentMRKHCNNTAITFEQFKKALFEYYENFTIGYKEEHLPDQDIKGLYEDFLQSDEILDEYLKHC*
(restricted) Ga0172365_1081583513300013127SedimentCSITFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESGETLDEYLKHCQQEDI*
(restricted) Ga0172366_1069594613300013128SedimentMPERSISFEQFKEALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESGETLDEYLKHC
(restricted) Ga0172364_1012298933300013129SedimentMRKHCNNTAITFEQFKKALFEYYENFTIGYKEEHLTDQDIKGLYEDFLQSDEILDEYLKHC*
(restricted) Ga0172362_1074431523300013133SedimentMPKRSITFEQFKEALAKYYEDFTIGYREQPTEQYLKVLYEDFLDSGETLDEYLKHC*
Ga0212092_127024723300022548Hot Spring Microbial MatMTFKQFKKALAERYEDFTVGYQEQPTEQDLKDLYKDFLEPGKTLDEYSKDC
Ga0212089_1009422113300022551Lake SedimentMPKRSITFKQFKKALAERYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLNEYSKEDC
Ga0212089_1012896513300022551Lake SedimentMRKHCNNTAITFEQFKKALFEYYENFTIGYKEEHLTDQDIKGLYEDFLESDETLDEYLKH
Ga0212089_1031393713300022551Lake SedimentMTFKQFKKALAKYYEDFTVGYQEQPTEQDLKDLYEDFLESGKTFDEYSKDC
Ga0212089_1047147623300022551Lake SedimentMPKRSVTFEQFKKALAERYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDE
Ga0212089_1056057913300022551Lake SedimentMPKRSVTFEQFKEALAKYYEDFTVGYQEQPTEQDLKDLYEDFLESGKTFDEYSKDC
Ga0209314_1030251613300025143Lake SedimentMPRRSITFEQFKEALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESGKTIDEYLKHC
Ga0209725_113982923300025144Lake SedimentMSKRSMSFEQFKDELAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDCSQESM
Ga0209322_1003416323300025146SoilMPRRLITFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLDSDKTLDEYSKDC
Ga0209636_1038896523300027893Marine SedimentMPKRSITFEQFKKALANYYEEFTIGDQEQLTEQDLKDLYEDFLESDETLDDYLKHC
Ga0209636_1041919333300027893Marine SedimentMSKSSVTFEQFINALAEHFEDFTVGYQEQPTDQDLKDLYEDFLESGESLDDYMRHGQQECNA
Ga0209636_1061879223300027893Marine SedimentMPKGSVTFEQFIKALVECFEDFTVGYQEQPTEQDLKDLYEDFLEFGKSLDEYMKDC
(restricted) Ga0315308_1000157163300031587SedimentMPKRSITFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESGETLDEYLKHCQQED
(restricted) Ga0315308_100698173300031587SedimentMPKRLMTFRQFKKALAQHYEDFTVGYQEQPTEQDLKDLYKDFLESGKTLDEYSKDC
(restricted) Ga0315308_100830133300031587SedimentMTFEQFKKKLAEYFEDFTVGYQEQPTEQDLKDLYEDFLEYGKTFDKYLRYCQQGC
(restricted) Ga0315308_100947933300031587SedimentMPKCSMTFEQFKKALAKRYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315308_101453743300031587SedimentLPKRSITFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYKDFLESDETLEEYLKHC
(restricted) Ga0315308_101611543300031587SedimentMPMRSITFEHFKKTLARQYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315308_101785333300031587SedimentVTLEQFKAALAKYFEDFTVGYQEQPTEQDLKDLYEDFLEYGKTFDKYLRYCQQDC
(restricted) Ga0315308_102485873300031587SedimentMSKRSITFEQFKKALAKYCEDFTVGYQEQPTERDLKDLYEDFLESGETLDEYSKDC
(restricted) Ga0315308_102866123300031587SedimentMTFEQFKKALAERYEDFTVCYQEQPTEQDLKDLYKDFLESGKTLDEYSKDC
(restricted) Ga0315308_103295633300031587SedimentMTFEQFKEELAKRYEDFTVGYQEQPTEQDLKDLCEDFLESGKTLDEYSKDCSQEGNG
(restricted) Ga0315308_103827513300031587SedimentMTFEQFKKALAEYFEDFTVGYQEQPTEQDLKDLYEDFSEFGKSLDEYLKDC
(restricted) Ga0315308_106746233300031587SedimentKVMPKRSMTFEQFKEALAKRFEDFTVGYHEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315308_108784823300031587SedimentMPKRSMTFEQFKEELAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315308_130027813300031587SedimentMSNRSVTFEQFKEALAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315307_109606713300031593SedimentMPKRSMTFEQFKEELAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315307_111899723300031593SedimentVPKSSMSFEQFKEELAKHYEDFTVGYQEQPTEQDLKDLYEDFLQSGKTLDEYSKEDC
(restricted) Ga0315309_100031283300031604SedimentMTFEQFKKALAEHYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315309_102918963300031604SedimentMLRPSVTFEQFKKALTKYYEDFTIGYQEQPTEQDLKDLYKDFLESGKTLKEYSKEDC
(restricted) Ga0315309_103753733300031604SedimentMPKRSMTFEQFKEELAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKT
(restricted) Ga0315309_104098623300031604SedimentMPKRSVTFEQFKKALAEYYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315309_113677623300031604SedimentMTFEQFKEELAQRYEDFTVGYQEQPTEQDLKDLCEDFLESGKTLDEYSKDCSQEGNG
(restricted) Ga0315309_116080713300031604SedimentLPERSVTFEQFKKALAKHYEDFTIGYQEQPTEQDLKDLYKDFLES
(restricted) Ga0315309_117727623300031604SedimentMPKRSMTFEQFKEGLAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315309_117808523300031604SedimentMTFEQFKEALAERYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDGYSKDC
(restricted) Ga0315309_119743423300031604SedimentLPKRSMTFEQFKEELAKRFEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315309_135944323300031604SedimentQFREALAKYYEDFTIGYQEQPTEQDLKDLCEDFLESGKTLDEYSKDC
(restricted) Ga0315306_1002800813300031806SedimentSTRKGSMTFEQFKKALAEYFEDFTVGYQEQPTEQDLKDLYEDFSEFGKSLDEYLKDC
(restricted) Ga0315306_1009710933300031806SedimentMSKRSMTFEQFKKVLAECYEDFTVGYQEQPTEQDLKDLYNDFLESGKPFDEYLKYCQQDC
(restricted) Ga0315306_1015556913300031806SedimentMRSITFEHFKKTLARQYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315306_1017010013300031806SedimentLPERSVTFEQFKKALAKYYEDFTVGYQEQPTEQDLKDLYKDFLESGKTLDEYSKDC
(restricted) Ga0315306_1024038523300031806SedimentMPKRSVTFEQFKEALAKCYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315306_1024692213300031806SedimentKGSVTFEQFKKALAEYFEDFTVGYQEQPTEQDLKDLYEDFLESGKSLDEYLKHGQQECNG
(restricted) Ga0315306_1030535913300031806SedimentMPKRSITFEQFKKALAKHYEDFVIGDKDQRTEQDLKILYEDFLDSSEPLDEYLKHC
(restricted) Ga0315306_1032679213300031806SedimentMSKRSMTFEQFKEELAKRYEDFTVSYQEQPTEQDLKDLYKDFLESGKTLDEYSKDC
Ga0315280_1005591553300031862SedimentMPERSITFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESGETLDEYLKHC
Ga0315280_1006855143300031862SedimentVPKRSITFEQFKKALAKHYNDFTIGYREPPTEQYLKDLYEDFLESSETLDEYLKHC
Ga0315280_1009845443300031862SedimentMPRRSITFEQFKKALAEYYEDFTIGYQEQPTEQDLKDLYKDFLESGKTLDEYSKDC
Ga0315280_1011972213300031862SedimentVSKRSISFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESSETLDEYLKHC
Ga0315280_1019361323300031862SedimentMPKRSITFEQFKKALAKHYNDFTIGYREPPTEQYLKDLYEDFLESSETLDEYLKHC
Ga0315280_1022460623300031862SedimentVPKRSITFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESNETLDEYLKHC
(restricted) Ga0315310_10006695103300031876SedimentMKALAGYFEDFTVGYQEQPTEQDLKDLYEDFLEYGKTFKEYLRYCRQDC
(restricted) Ga0315310_1000724863300031876SedimentMPKRSITFEQFKKALAKRYEDFAVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315310_1002740433300031876SedimentMTFEQFKKALAERYEDFTVGYQEQPTEQDLKDLYKDFLESGKTLDQYSKDC
(restricted) Ga0315310_1003397433300031876SedimentMTFEQFKEELAKRFEDFTVGYQEQPTEQDLKDLYDDFLESGKTLNEYSKEDC
(restricted) Ga0315310_1005241723300031876SedimentVSERSITFEQFKEELAKRYEDFTVGYQEQPTEQDLKDLYEDFVESGKTLDEYSKDC
(restricted) Ga0315310_1005253413300031876SedimentVPRRSITFEQFKEELAKRFKDFAVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDQDCK
(restricted) Ga0315310_1014271013300031876SedimentMPKRSMTFEQFKKALAERYEDFTVGYQEQPTEQNLKDLYEDFLESGKTLDEY
(restricted) Ga0315310_1022109223300031876SedimentMPKRSITFEQFKEALAKRYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315310_1026363323300031876SedimentLPERSIAFEQFKKALAERYEDFTVGYQEQATEQDLKDLYEDFLEFGKSLDEYLKDC
(restricted) Ga0315310_1030381313300031876SedimentMPRRSVTFEQFKKALGKHYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLNEYSKDC
(restricted) Ga0315310_1031535513300031876SedimentMPKDSMTFEQFKKALAERYEDLTVGYQEQPTEQDLKDLYEDFLESGKTLNEYSKEDC
(restricted) Ga0315310_1033068613300031876SedimentVPERSITFEQFKKALAKRYEDFTVGYQEQPTEQDLKDLYQDFLESGKTLDEYSKDC
(restricted) Ga0315310_1036682623300031876SedimentMPERSMTFEQFKEELAKRYEDFTVGYQEQPTEQDLKDLYKDFLESGKTLDEYSKEDC
(restricted) Ga0315314_1000334223300031877SedimentMLKRSLTFEQFKKALAEHYEDFTIGYQEQPTEQDLKDLYEDFLESGKTLNEYLKHCQQE
(restricted) Ga0315314_1000546123300031877SedimentVTLEQFKKALAEYFEDFTVGYQEQPTEQDLKDLYEDFLKYGKAFDEYLRYCQQDC
(restricted) Ga0315314_101547633300031877SedimentMPKRSITFEQFKEALAKYYEDFTVGYQEQPTEQDLKDLYKDFLESGKTLDEYSKEDC
(restricted) Ga0315314_101692223300031877SedimentMTFEQFKEELAERYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315314_102246833300031877SedimentMPKDSMTFEQFKKTLAKYHEDFADCYHEQPTEQDLKDLYEDFLGSGKTLDEYSKEDC
(restricted) Ga0315314_102531553300031877SedimentMKNMNIIQVIKKELAKHYEDFTVDYQEQPTEQDLKDLYEDFVQSGKTLDEYSKDC
(restricted) Ga0315314_104725823300031877SedimentMPKRPVTFEQFKKALAKYHEDSTIGYKEQLTEQDQKNLYKDFLESDETLDEYLKHC
(restricted) Ga0315314_106115733300031877SedimentVTFEQFLKALAEYSEDFTVGYQEQPTDQDLKDLYEDFLESGENLDDYLKYGQQECND
(restricted) Ga0315314_107563033300031877SedimentVTFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYKDFLESDKTLNEYSKEDC
(restricted) Ga0315314_114482723300031877SedimentMGVPRHSITLEQFKKALAKYYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315314_120656623300031877SedimentMTFEQFKEALAKYCEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKDC
(restricted) Ga0315314_121747413300031877SedimentMTFEQFKKALAEHYDDFTIGYQEQPTEQDLKDLYEDFLQSGKTLEEYSKDC
(restricted) Ga0315314_125165623300031877SedimentVPKSSITFEQFKKELAELYEDFTVGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315314_130091423300031877SedimentMLKRSLTFEQFKKALAERYEDFTIGYQEQPTEQDLKDLYKDFLESGKTLNEYSKDC
(restricted) Ga0315312_100002083300031898SedimentMTFKQFKEELAKRYEDFTAGYQEQPTEQDLKDLYEDFLESGKTLDEYSKEDC
(restricted) Ga0315312_101034293300031898SedimentMPKRSMTFEQFKKALAKHYEDFTIGYHEQPTEQDLKDLYKDFLESGKTLNEYSKEDC
(restricted) Ga0315312_101146323300031898SedimentLYIANAFLPTTSLTFEQFKKALAKYYEDFTVGYQEQPTEQDLKDLYKDFLESGKTLNEYSKEDC
(restricted) Ga0315312_106297923300031898SedimentVPERSITFEQFKKALANYHEDFTIGYQEQPTEQDLKDVYEDFLESGKTLDEYSKDC
Ga0315296_1001596643300032020SedimentMPKRSITFEQFKKALAKYYEDFTIGYQEQPTEQDLKDLYEDFLESGETLDEYLKHC
Ga0315296_1004076523300032020SedimentMPKCLITFDQFKKALSKYYEDFTIGYQEQPTEQDLKDLYEDLLESGETLDEYLKHC
Ga0315296_1009091123300032020SedimentMPKCSITFEQFRKALAQYYEDFTIGYQEQQTEQYQKDLYEDFLESDETLDEYLKHC


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.