Metagenome / Metatranscriptome Family F087832

Basic Information
Family ID	F087832
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	MLAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Number of Associated Samples	106
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	62.73 %
% of genes near scaffold ends (potentially truncated)	43.64 %
% of genes from short scaffolds (< 2000 bps)	95.45 %
Associated GOLD sequencing projects	101
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (71.818 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (33.636 % of family members)
Environment Ontology (ENVO)	Unclassified (33.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.091 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.84% β-sheet: 0.00% Coil/Unstructured: 51.16%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00211	Guanylate_cyc	4.55
PF00877	NLPC_P60	4.55
PF13191	AAA_16	3.64
PF13442	Cytochrome_CBB3	1.82
PF00536	SAM_1	1.82
PF02556	SecB	0.91
PF00072	Response_reg	0.91
PF03401	TctC	0.91
PF13561	adh_short_C2	0.91
PF04392	ABC_sub_bind	0.91
PF07969	Amidohydro_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	4.55
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	4.55
COG1952	Preprotein translocase subunit SecB	Intracellular trafficking, secretion, and vesicular transport [U]	0.91
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.91
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
All Organisms	root	All Organisms	28.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
cellular organisms	root	All Organisms → cellular organisms	28.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	20.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.73 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.64 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.73 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.45 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.73 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.73 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.91 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.73 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.91 %
Oceanospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	2.73 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Motiliproteus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus	0.91 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.91 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	2.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Motiliproteus coralliicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus → Motiliproteus coralliicola	0.91 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.91 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.91 %
Bradyrhizobium sp. 162	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 162	0.91 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.91 %
Motiliproteus coralliicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus → Motiliproteus coralliicola	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Solirubrobacter sp. CPCC 204708	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	0.91 %
Rhodoplanes sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	0.91 %
Bradyrhizobium sp. 162	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 162	0.91 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.91 %
Motiliproteus coralliicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus → Motiliproteus coralliicola	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q01DQ9A7	Not Available	519	Open in IMG/M
2170459005\|F1BAP7Q02J05Z1	Not Available	538	Open in IMG/M
2170459010\|GIO7OMY02F2IDC	Not Available	526	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101771893	Not Available	1146	Open in IMG/M
3300002077\|JGI24744J21845_10070847	Not Available	636	Open in IMG/M
3300002568\|C688J35102_120858121	All Organisms → cellular organisms → Bacteria → Proteobacteria	1854	Open in IMG/M
3300003575\|Ga0007409J51694_1032050	Not Available	539	Open in IMG/M
3300004081\|Ga0063454_100102470	All Organisms → cellular organisms → Bacteria → Proteobacteria	1370	Open in IMG/M
3300004157\|Ga0062590_100282938	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300005147\|Ga0066821_1012133	Not Available	641	Open in IMG/M
3300005160\|Ga0066820_1007144	Not Available	682	Open in IMG/M
3300005165\|Ga0066869_10055883	Not Available	707	Open in IMG/M
3300005334\|Ga0068869_100176981	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300005335\|Ga0070666_10687745	Not Available	750	Open in IMG/M
3300005437\|Ga0070710_10054816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2250	Open in IMG/M
3300005438\|Ga0070701_11233971	Not Available	532	Open in IMG/M
3300005834\|Ga0068851_10356741	Not Available	852	Open in IMG/M
3300005842\|Ga0068858_100395396	Not Available	1327	Open in IMG/M
3300006163\|Ga0070715_10062882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1635	Open in IMG/M
3300006577\|Ga0074050_12077090	Not Available	625	Open in IMG/M
3300007788\|Ga0099795_10593571	Not Available	526	Open in IMG/M
3300009098\|Ga0105245_10013178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7203	Open in IMG/M
3300009098\|Ga0105245_11248360	Not Available	791	Open in IMG/M
3300009143\|Ga0099792_10456749	Not Available	792	Open in IMG/M
3300009176\|Ga0105242_10952621	Not Available	862	Open in IMG/M
3300009545\|Ga0105237_10757515	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300010046\|Ga0126384_11230689	Not Available	692	Open in IMG/M
3300010047\|Ga0126382_11936887	Not Available	559	Open in IMG/M
3300010147\|Ga0126319_1556290	Not Available	522	Open in IMG/M
3300010154\|Ga0127503_10747183	Not Available	700	Open in IMG/M
3300010397\|Ga0134124_10118725	All Organisms → cellular organisms → Bacteria → Proteobacteria	2325	Open in IMG/M
3300011107\|Ga0151490_1407705	Not Available	601	Open in IMG/M
3300011119\|Ga0105246_10827043	Not Available	824	Open in IMG/M
3300012212\|Ga0150985_105634885	Not Available	553	Open in IMG/M
3300012916\|Ga0157310_10179568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp.	754	Open in IMG/M
3300012924\|Ga0137413_11099253	Not Available	629	Open in IMG/M
3300012937\|Ga0162653_100022659	Not Available	858	Open in IMG/M
3300012987\|Ga0164307_10400466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1011	Open in IMG/M
3300013306\|Ga0163162_10642437	Not Available	1185	Open in IMG/M
3300013308\|Ga0157375_12593883	Not Available	606	Open in IMG/M
3300014745\|Ga0157377_10135671	Not Available	1508	Open in IMG/M
3300014969\|Ga0157376_10357509	Not Available	1400	Open in IMG/M
3300015372\|Ga0132256_102421673	Not Available	627	Open in IMG/M
3300017792\|Ga0163161_11747559	Not Available	552	Open in IMG/M
3300017965\|Ga0190266_10111084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1150	Open in IMG/M
3300017997\|Ga0184610_1155578	Not Available	752	Open in IMG/M
3300018027\|Ga0184605_10008170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3910	Open in IMG/M
3300018051\|Ga0184620_10201694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	661	Open in IMG/M
3300018055\|Ga0184616_10255359	Not Available	665	Open in IMG/M
3300018066\|Ga0184617_1057551	Not Available	1005	Open in IMG/M
3300018067\|Ga0184611_1186678	Not Available	737	Open in IMG/M
3300018081\|Ga0184625_10224408	Not Available	984	Open in IMG/M
3300018082\|Ga0184639_10121577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1384	Open in IMG/M
3300018469\|Ga0190270_10362806	All Organisms → cellular organisms → Bacteria → Proteobacteria	1323	Open in IMG/M
3300019228\|Ga0180119_1377729	Not Available	519	Open in IMG/M
3300019269\|Ga0184644_1673697	Not Available	694	Open in IMG/M
3300019279\|Ga0184642_1070784	Not Available	616	Open in IMG/M
3300019356\|Ga0173481_10884173	Not Available	502	Open in IMG/M
3300019362\|Ga0173479_10514405	Not Available	607	Open in IMG/M
3300019872\|Ga0193754_1015237	Not Available	817	Open in IMG/M
3300019887\|Ga0193729_1148049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	851	Open in IMG/M
3300021078\|Ga0210381_10089655	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300021082\|Ga0210380_10237907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	825	Open in IMG/M
3300021951\|Ga0222624_1173597	Not Available	803	Open in IMG/M
3300021953\|Ga0213880_10190384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 162	573	Open in IMG/M
3300022756\|Ga0222622_10199288	Not Available	1327	Open in IMG/M
3300025898\|Ga0207692_10836033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300025903\|Ga0207680_10320157	Not Available	1084	Open in IMG/M
3300025907\|Ga0207645_10526619	Not Available	801	Open in IMG/M
3300026557\|Ga0179587_10931154	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300027288\|Ga0208525_1014304	Not Available	890	Open in IMG/M
3300027401\|Ga0208637_1005259	Not Available	1195	Open in IMG/M
3300027560\|Ga0207981_1091874	Not Available	558	Open in IMG/M
3300028608\|Ga0247819_11081027	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Motiliproteus → Motiliproteus coralliicola	511	Open in IMG/M
3300028707\|Ga0307291_1112146	Not Available	683	Open in IMG/M
3300028710\|Ga0307322_10023943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. CPCC 204708	1419	Open in IMG/M
3300028712\|Ga0307285_10093266	Not Available	790	Open in IMG/M
3300028716\|Ga0307311_10249429	Not Available	527	Open in IMG/M
3300028719\|Ga0307301_10129621	Not Available	807	Open in IMG/M
3300028719\|Ga0307301_10137666	Not Available	783	Open in IMG/M
3300028720\|Ga0307317_10180161	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300028721\|Ga0307315_10073427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	980	Open in IMG/M
3300028778\|Ga0307288_10138651	Not Available	909	Open in IMG/M
3300028784\|Ga0307282_10180320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1006	Open in IMG/M
3300028790\|Ga0307283_10084145	Not Available	810	Open in IMG/M
3300028807\|Ga0307305_10217872	Not Available	875	Open in IMG/M
3300028809\|Ga0247824_10112524	All Organisms → cellular organisms → Bacteria → Proteobacteria	1441	Open in IMG/M
3300028814\|Ga0307302_10196230	Not Available	984	Open in IMG/M
3300028819\|Ga0307296_10082666	Not Available	1711	Open in IMG/M
3300028876\|Ga0307286_10216630	Not Available	697	Open in IMG/M
3300030905\|Ga0308200_1027973	Not Available	948	Open in IMG/M
3300030988\|Ga0308183_1092508	Not Available	677	Open in IMG/M
3300030993\|Ga0308190_1125078	Not Available	588	Open in IMG/M
3300031058\|Ga0308189_10418667	Not Available	558	Open in IMG/M
3300031093\|Ga0308197_10074251	Not Available	945	Open in IMG/M
3300031114\|Ga0308187_10325400	Not Available	585	Open in IMG/M
3300031125\|Ga0308182_1004157	Not Available	971	Open in IMG/M
3300031170\|Ga0307498_10323001	Not Available	584	Open in IMG/M
3300031184\|Ga0307499_10159361	Not Available	668	Open in IMG/M
3300031198\|Ga0307500_10033375	Not Available	1176	Open in IMG/M
3300031226\|Ga0307497_10616611	Not Available	550	Open in IMG/M
3300031469\|Ga0170819_15409248	Not Available	638	Open in IMG/M
3300031547\|Ga0310887_10482685	Not Available	744	Open in IMG/M
3300031740\|Ga0307468_100940116	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	754	Open in IMG/M
3300031910\|Ga0306923_11585978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300031954\|Ga0306926_10277219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2076	Open in IMG/M
3300032174\|Ga0307470_10648262	Not Available	797	Open in IMG/M
3300034644\|Ga0370548_032106	Not Available	864	Open in IMG/M
3300034644\|Ga0370548_081590	Not Available	628	Open in IMG/M
3300034680\|Ga0370541_033482	Not Available	627	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.82%
Host-Associated	Host-Associated	18.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.36%
Plants	Host-Associated → Plants	18.18%
Aquatic	Environmental → Aquatic	15.45%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	64.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.91%
Sediment	Environmental → Aquatic → Sediment	8.18%
Freshwater	Environmental → Aquatic → Freshwater	7.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.27%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.91%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.45%
Loam	Environmental → Terrestrial → Soil → Loam	5.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	33.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.27%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.64%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.91%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003575	Grassland soil microbial communities from Hopland, California, USA - Sample H1_Rhizo_25 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019228	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT790_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019872	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a1	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027288	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC (SPAdes)	Environmental	Open in IMG/M
3300027401	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_03627800	2170459005	Grass Soil	MLAEIFMLRVEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
E41_07651700	2170459005	Grass Soil	MLAEIFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
F62_03101940	2170459010	Grass Soil	EIFMLRLEATARAAKEATAITRSTSPFVPVTLPPAKAS
INPhiseqgaiiFebDRAFT_1017718931	3300000364	Soil	MLAEIFRLRLEXTAXAAREAATITRSTSPFVPITLPVPT
JGI24744J21845_100708472	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	MSAEIFMLRLEATARVAKEAATITRSTSPFVPVTXPVPTPKAA*
C688J35102_1208581212	3300002568	Soil	MSAEIFMLRLEATARVAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0007409J51694_10320501	3300003575	Avena Fatua Rhizosphere	MSAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0063454_1001024702	3300004081	Soil	MSAEIFMLRLEATARVAKEAATITRRTSPFVPVTLPVPTPKAA*
Ga0062590_1002829381	3300004157	Soil	MLAEIYMLRLEATARAAKEAASTITRSTSAFVPVTLPPVKAS*
Ga0066821_10121331	3300005147	Soil	MSAEIFMLRLEATARAAKEASTITRSTSPFVPVTLPVPTPKAA*
Ga0066820_10071441	3300005160	Soil	MSAEIFMLRLEATARVAKEAATITRSTSPFVPVTVPVPTPKAA*
Ga0066869_100558832	3300005165	Soil	EIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0068869_1001769814	3300005334	Miscanthus Rhizosphere	IRLSPREARMSAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0070666_106877452	3300005335	Switchgrass Rhizosphere	MSAEIFMLRLEATARAAKETATITRSTSPFVPVTLPVPTPKAA*
Ga0070710_100548164	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSAEIFMLRLEATARAAKEGATITRSTSPFVPVTLPVPTPKAA*
Ga0070701_112339712	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	SPREARMSAEIFMLRLEATARVAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0068851_103567412	3300005834	Corn Rhizosphere	MLAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0068858_1003953964	3300005842	Switchgrass Rhizosphere	SPREARMSAEIFMLRLEATARAAKEAATITRSTSPFVPVTVPVPTPKAA*
Ga0070715_100628822	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MLAEIFMIRLEAVARAAKEAANSPRFVPVRLPLIKKGPARL*
Ga0074050_120770901	3300006577	Soil	SPREARMSAEIFMLRLEATARAAKEAATIARSTSPFVPVTLPVPTPKAA*
Ga0099795_105935712	3300007788	Vadose Zone Soil	LRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0105245_100131781	3300009098	Miscanthus Rhizosphere	LEATARVAKEAATITRSTSPFVPVTVPVPTPKAA*
Ga0105245_112483602	3300009098	Miscanthus Rhizosphere	MSAEIFMLRLEATARAAKEAVTITRSTSPFVPVTLPVPTPKAA*
Ga0099792_104567492	3300009143	Vadose Zone Soil	MLAEIFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0105242_109526212	3300009176	Miscanthus Rhizosphere	MSAEIFMLRLEATARAAKEAATITRSTSPCVHVTLPVPTPKAA*
Ga0105237_107575151	3300009545	Corn Rhizosphere	HQGRARMSAGIFMLRLEATGRGAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0126384_112306892	3300010046	Tropical Forest Soil	MLAEIFMLRMEAAARAAKETASTRFVPVTLPVPAPKASERA*
Ga0126382_119368871	3300010047	Tropical Forest Soil	MLAEIFMLRMEAAARAAKEAASTRFVPVTLPVPAPKASERA*
Ga0126319_15562901	3300010147	Soil	RMLAEIFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0127503_107471832	3300010154	Soil	EIFLLRLEATARSAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0134124_101187252	3300010397	Terrestrial Soil	MSAEIFMLRLEATGRGAKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0151490_14077051	3300011107	Soil	FMLRLEATARAAKEGATITRSTSPFVPVTLPVPTPKAA*
Ga0105246_108270431	3300011119	Miscanthus Rhizosphere	MSAEIFMLRLEATARAAKETATITRSTSPFVPVTLSVPTPKAA*
Ga0150985_1056348852	3300012212	Avena Fatua Rhizosphere	MLAEIFFLRLEATARATKEATVTSSNSRFVPIALPTAKAS*
Ga0157310_101795683	3300012916	Soil	MLAEIYMLRLEATARAAKEAASTITRSTSAFVPVTLPPVKA
Ga0137413_110992532	3300012924	Vadose Zone Soil	MLAEIFMLRLEATARAGKEAATITRSTSPFVPVTLPVPTPKAA*
Ga0162653_1000226591	3300012937	Soil	MLAEIFMLRLEATTRAAKEAATITRSTSPLVPVTLPVSTPKAA*
Ga0164307_104004661	3300012987	Soil	MLRLEATARVAKEAATITRSTSPFVPVTVPVPTPKAA*
Ga0163162_106424374	3300013306	Switchgrass Rhizosphere	MSAEIFMLRLEATARAAKETATITRSTSPFVPVTLPVPTP
Ga0157375_125938831	3300013308	Miscanthus Rhizosphere	MSTEIFMLRLEATARAAKEAVTITRSTSPFVPVTLPVPTPKAA*
Ga0157377_101356711	3300014745	Miscanthus Rhizosphere	MSAEIFMLRLEATARAAKEAATVTRSTSPFVPVTLPVPTPKAA*
Ga0157376_103575091	3300014969	Miscanthus Rhizosphere	MSAEIFMLRLEATARVAKEAATITRSTSPFVPVTLPV
Ga0132256_1024216732	3300015372	Arabidopsis Rhizosphere	ARMSAEIFMLRLEATARAAKEGATITRSTSPFVPVTLPVPTPKAA*
Ga0163161_117475591	3300017792	Switchgrass Rhizosphere	MLAEIYMLRLEATARAAKEAASTITRSTSAFVPVTLPPVKAS
Ga0190266_101110842	3300017965	Soil	MLAEIFMIRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184610_11555782	3300017997	Groundwater Sediment	MIGVSPREARMLAEIFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184605_100081705	3300018027	Groundwater Sediment	MLAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184620_102016942	3300018051	Groundwater Sediment	MLAEIFMLRLEATAWAAKEAATITRSTSPFVPITLPPVKAS
Ga0184616_102553592	3300018055	Groundwater Sediment	AEIFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184617_10575511	3300018066	Groundwater Sediment	MLAEIFMLRLEATAGAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184611_11866781	3300018067	Groundwater Sediment	MLAEIFMIRLEATAWAAKEAATITRSTSPFVPFTLPVPTPKAA
Ga0184625_102244081	3300018081	Groundwater Sediment	MLAEIFLLRLEAKARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184639_101215773	3300018082	Groundwater Sediment	MTGASPREARMLAEIFLLRLEAKARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0190270_103628063	3300018469	Soil	MSAEIFMLRLEATARGAKEAATITRSTSPFVPVTLPVSTPKAA
Ga0180119_13777291	3300019228	Groundwater Sediment	EIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184644_16736972	3300019269	Groundwater Sediment	MSAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0184642_10707841	3300019279	Groundwater Sediment	RMLAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0173481_108841731	3300019356	Soil	MSAEIFMLRLEATARVAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0173479_105144052	3300019362	Soil	FMLRLEATARVAKEAATITRSTSPFVPVTVPVPTPKAA
Ga0193754_10152372	3300019872	Soil	MLAEIFMLRLEATARAGKEAATITRSTSPFVPVTLPVPTPKAA
Ga0193729_11480492	3300019887	Soil	MLAEIFMLLLEATARAAKEAATITRTTSPFVPITLPPVKAS
Ga0210381_100896553	3300021078	Groundwater Sediment	MLRLEATARAAKEAATITRTTSPFVPITLPPVKAS
Ga0210380_102379072	3300021082	Groundwater Sediment	MLAEIFFLRLEATARATKEATVTSSNSRFVPITLPT
Ga0222624_11735971	3300021951	Groundwater Sediment	RMLAEIFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0213880_101903841	3300021953	Exposed Rock	MLAEIFLLRLEATARAAGSTRTVSTSPFIPVVLPAQKPARSGE
Ga0222622_101992881	3300022756	Groundwater Sediment	LLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0207692_108360332	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MLAEIFMIRLEAVARAAKEAANSPRFVPVRLPLIKKGPARL
Ga0207680_103201573	3300025903	Switchgrass Rhizosphere	PKIRLSPREARMSAEIFMLRLEATARAAKETATITRSTSPFVPVTLPVPTPKAA
Ga0207645_105266192	3300025907	Miscanthus Rhizosphere	MSAEIFMLRLEATARVAKEAATITRSTSPFVPVTVPVPTPKAA
Ga0179587_109311542	3300026557	Vadose Zone Soil	MLAEIFLLRLEATARAAKEAATITRSTSPFVPVTL
Ga0208525_10143041	3300027288	Soil	MSAEIFMLRLEATGRGAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0208637_10052593	3300027401	Soil	MSAEIFMLRLEATARAAKEAATITRSTSPFVPVTLLVPTPKAA
Ga0207981_10918741	3300027560	Soil	PREARMSAEIFMLRLEATARVAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0247819_110810271	3300028608	Soil	MSAEIFMLRLDATARGAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307291_11121462	3300028707	Soil	AEIFMLRLEARAGAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307322_100239431	3300028710	Soil	FMLRLQATARAAKEAATITRSTSPFVPITLPPVKAS
Ga0307285_100932661	3300028712	Soil	FLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307311_102494292	3300028716	Soil	MLAEIFLLRLEATARAAKEAATITRSTSPFVPATLPVPTPKAA
Ga0307301_101296211	3300028719	Soil	EARMLAEVFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307301_101376662	3300028719	Soil	MLAEIFMLRLEATAWAAKEAATITRSTSPFVPVTLPVPKAA
Ga0307317_101801611	3300028720	Soil	MLAEIFMLRLEATAWAAKEAATITRSTSPFVPVTLPVP
Ga0307315_100734273	3300028721	Soil	MLAEIFMLRLEATTRAAKEAATITRSTSPLVPVTLPVSTPKAA
Ga0307288_101386512	3300028778	Soil	MLAEIFFLRLEATARATKEATVTSSNSRFVPITPPTAKAP
Ga0307282_101803204	3300028784	Soil	FMLRLEATAGAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307283_100841452	3300028790	Soil	LAEVFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307305_102178721	3300028807	Soil	IIGLLPREARMLAEVFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0247824_101125241	3300028809	Soil	MSAEIFMLRLEATARGAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307302_101962301	3300028814	Soil	REARMLAEVFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307296_100826663	3300028819	Soil	MLAEIFMLRLEARAGAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307286_102166302	3300028876	Soil	MLAEIFMLRLEATARAAKEAATITRSTSPFVPITLPPVKAS
Ga0308200_10279731	3300030905	Soil	MLAEVFLLRLEATARAAKEAATITRSTSPFGPVTLPVPTPKAA
Ga0308183_10925081	3300030988	Soil	RMLAEIFMLRLEATAWAAKEAATITRSTSPFVPVTLPVPKAA
Ga0308190_11250782	3300030993	Soil	LAEIFMIRLEATAWAAKEAATITRSTSPFVPVTLPVPKAA
Ga0308189_104186671	3300031058	Soil	RMLAEIFMLRLEATAWAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0308197_100742511	3300031093	Soil	PSPREARMLAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0308187_103254001	3300031114	Soil	TINPSPREARMLAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0308182_10041573	3300031125	Soil	MLAEIFMLRLEATARAAKEAATITRSTAPFVPVTLPVPTPKAA
Ga0307498_103230011	3300031170	Soil	LRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307499_101593611	3300031184	Soil	LRLEATARSAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307500_100333751	3300031198	Soil	MSAEIFMLRLEATARAAKETATITRSTSPFVPVTLPVPTPKAA
Ga0307497_106166112	3300031226	Soil	MLAEIFLLRLEATARSAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0170819_154092482	3300031469	Forest Soil	MSAEIFMLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAV
Ga0310887_104826851	3300031547	Soil	MSAEIFMLRLEAMARVAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0307468_1009401162	3300031740	Hardwood Forest Soil	MSAEIFMMRLETTARAAREAATITRSTSPFVPVTLPVPTPKAA
Ga0306923_115859782	3300031910	Soil	MLAEIFMLRLEATARAAKEAANSSRFVPITLPTAKASQIPT
Ga0306926_102772194	3300031954	Soil	MLAEIFMLRLEATARAAKEAANSSRFVPITLPTAKAS
Ga0307470_106482622	3300032174	Hardwood Forest Soil	MSAEIFMMRLETTARAAREAATITRSTSPFVPVTLPMPTPKAA
Ga0370548_032106_643_756	3300034644	Soil	MLRLEATTRAAKEAATITRSTSPLVPVTLPVPTPKAA
Ga0370548_081590_6_137	3300034644	Soil	MLAEVFLLRLEATARAAKEAATITRSTSPFVPVTLPVPTPKAA
Ga0370541_033482_6_137	3300034680	Soil	MLAEIFMLRLEATARAAKEAATITRSTSPFVPVALPVPTPKAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087832

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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