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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F087793 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 110 |
| Average Sequence Length | 56 residues |
| Representative Sequence | GVVVVAATVAWAFLKTCWELGTVYYKRLCTFLGALRKFCRDYWSKTAAV |
| Number of Associated Samples | 106 |
| Number of Associated Scaffolds | 110 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 93.64 % |
| % of genes from short scaffolds (< 2000 bps) | 89.09 % |
| Associated GOLD sequencing projects | 106 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.37 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (61.818 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (8.182 % of family members) |
| Environment Ontology (ENVO) | Unclassified (27.273 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (38.182 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 61.04% β-sheet: 0.00% Coil/Unstructured: 38.96% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 110 Family Scaffolds |
|---|---|---|
| PF00075 | RNase_H | 2.73 |
| PF00012 | HSP70 | 0.91 |
| PF06739 | SBBP | 0.91 |
| COG ID | Name | Functional Category | % Frequency in 110 Family Scaffolds |
|---|---|---|---|
| COG0443 | Molecular chaperone DnaK (HSP70) | Posttranslational modification, protein turnover, chaperones [O] | 0.91 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 61.82 % |
| All Organisms | root | All Organisms | 38.18 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 8.18% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 7.27% |
| Soil | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil | 7.27% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland | 5.45% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 5.45% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 4.55% |
| Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 4.55% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 3.64% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 3.64% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 3.64% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.64% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.64% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.64% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 2.73% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 2.73% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.82% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.82% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 1.82% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.82% |
| Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.82% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.82% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 1.82% |
| Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment | 0.91% |
| Iron-Sulfur Acid Spring | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring | 0.91% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.91% |
| Arctic Peat Soil | Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil | 0.91% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.91% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil | 0.91% |
| Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.91% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 0.91% |
| Bog Forest Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil | 0.91% |
| Palsa | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa | 0.91% |
| Permafrost | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost | 0.91% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.91% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere | 0.91% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.91% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.91% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.91% |
| Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere | 0.91% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300001593 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 | Environmental | Open in IMG/M |
| 3300005167 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 | Environmental | Open in IMG/M |
| 3300005437 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG | Environmental | Open in IMG/M |
| 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Environmental | Open in IMG/M |
| 3300005538 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 | Environmental | Open in IMG/M |
| 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Host-Associated | Open in IMG/M |
| 3300005578 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 | Host-Associated | Open in IMG/M |
| 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Host-Associated | Open in IMG/M |
| 3300005712 | Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 | Environmental | Open in IMG/M |
| 3300005921 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 | Environmental | Open in IMG/M |
| 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006162 | Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 | Environmental | Open in IMG/M |
| 3300006163 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG | Environmental | Open in IMG/M |
| 3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
| 3300006791 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 | Environmental | Open in IMG/M |
| 3300006871 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 | Host-Associated | Open in IMG/M |
| 3300006893 | Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG | Environmental | Open in IMG/M |
| 3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
| 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
| 3300009634 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150 | Environmental | Open in IMG/M |
| 3300009635 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10 | Environmental | Open in IMG/M |
| 3300009643 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 | Environmental | Open in IMG/M |
| 3300009762 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40 | Environmental | Open in IMG/M |
| 3300010343 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1 | Environmental | Open in IMG/M |
| 3300010358 | Tropical forest soil microbial communities from Panama - MetaG Plot_3 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010362 | Tropical forest soil microbial communities from Panama - MetaG Plot_22 | Environmental | Open in IMG/M |
| 3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010937 | Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139 | Environmental | Open in IMG/M |
| 3300012354 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG | Environmental | Open in IMG/M |
| 3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014160 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG | Environmental | Open in IMG/M |
| 3300014165 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG | Environmental | Open in IMG/M |
| 3300014169 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG | Environmental | Open in IMG/M |
| 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Host-Associated | Open in IMG/M |
| 3300014493 | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG | Environmental | Open in IMG/M |
| 3300014495 | Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG | Environmental | Open in IMG/M |
| 3300014501 | Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300016319 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017924 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5 | Environmental | Open in IMG/M |
| 3300017925 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 | Environmental | Open in IMG/M |
| 3300017948 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10 | Environmental | Open in IMG/M |
| 3300017988 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG | Environmental | Open in IMG/M |
| 3300017994 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2 | Environmental | Open in IMG/M |
| 3300018004 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100 | Environmental | Open in IMG/M |
| 3300018016 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40 | Environmental | Open in IMG/M |
| 3300018017 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40 | Environmental | Open in IMG/M |
| 3300018023 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100 | Environmental | Open in IMG/M |
| 3300018044 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10 | Environmental | Open in IMG/M |
| 3300018088 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG | Environmental | Open in IMG/M |
| 3300019787 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction) | Environmental | Open in IMG/M |
| 3300021088 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M | Environmental | Open in IMG/M |
| 3300021178 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021420 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M | Environmental | Open in IMG/M |
| 3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
| 3300022526 | Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14 | Environmental | Open in IMG/M |
| 3300025453 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025576 | Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes) | Environmental | Open in IMG/M |
| 3300025864 | Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212 (SPAdes) | Environmental | Open in IMG/M |
| 3300025944 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026381 | Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T-25 | Environmental | Open in IMG/M |
| 3300027676 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300028069 | Peat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T0 | Environmental | Open in IMG/M |
| 3300028536 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300028762 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3 | Environmental | Open in IMG/M |
| 3300028765 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_2 | Environmental | Open in IMG/M |
| 3300028798 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2 | Environmental | Open in IMG/M |
| 3300028882 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3 | Environmental | Open in IMG/M |
| 3300028906 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2) | Environmental | Open in IMG/M |
| 3300029908 | II_Bog_E1 coassembly | Environmental | Open in IMG/M |
| 3300029917 | I_Bog_E1 coassembly | Environmental | Open in IMG/M |
| 3300029943 | I_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300030058 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1 | Environmental | Open in IMG/M |
| 3300030815 | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030906 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3 | Environmental | Open in IMG/M |
| 3300031229 | Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38 | Environmental | Open in IMG/M |
| 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Host-Associated | Open in IMG/M |
| 3300031573 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031833 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178 | Environmental | Open in IMG/M |
| 3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
| 3300031942 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176 | Environmental | Open in IMG/M |
| 3300032074 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 | Environmental | Open in IMG/M |
| 3300032094 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25 | Environmental | Open in IMG/M |
| 3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
| 3300032805 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2 | Environmental | Open in IMG/M |
| 3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032955 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5 | Environmental | Open in IMG/M |
| 3300033819 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-M | Environmental | Open in IMG/M |
| 3300033823 | Peat soil microbial communities from Stordalen Mire, Sweden - 714 S3 30-34 | Environmental | Open in IMG/M |
| 3300033827 | Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 5-9 | Environmental | Open in IMG/M |
| 3300033890 | Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-1-M | Environmental | Open in IMG/M |
| 3300034163 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| INPhiseqgaiiFebDRAFT_1055483923 | 3300000364 | Soil | AATVAWAFFKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
| JGI12635J15846_107749631 | 3300001593 | Forest Soil | YSILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV* |
| Ga0066672_103827692 | 3300005167 | Soil | ATVAWAFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
| Ga0070710_107074431 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | WAFLKTCWELGTVYCKRLCTFVVALRKFCRDYWSKTAAA* |
| Ga0070679_1012279592 | 3300005530 | Corn Rhizosphere | VALARIVLENVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0070731_107470542 | 3300005538 | Surface Soil | IGQMVMDNVFGEVLLNGFGMLKIGLGILAAMLAWAFLKTCWELGIVYCRRLCTFVVALRKFCRNYWSKTAAV* |
| Ga0068855_1010400612 | 3300005563 | Corn Rhizosphere | VLKIALGLLAFTVAWAFLKTLWELGIAYHRKLCTFHAALRKFCREYWSSKAAAV* |
| Ga0068854_1018811071 | 3300005578 | Corn Rhizosphere | AATLAWAFLKTGWELGTFHYKRLCTFVGALRIFCRDYWSKTAAV* |
| Ga0068856_1026198081 | 3300005614 | Corn Rhizosphere | WAFLKTFWELGIAYHRKLCTFYAALRKFCREYWSSKAAAV* |
| Ga0070764_106328172 | 3300005712 | Soil | ILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV* |
| Ga0070766_112632161 | 3300005921 | Soil | GMGVLAATVAWAFLKTCWELGTFHYKRLCTFMGALRRFCRNYWSKTAAV* |
| Ga0070717_108511971 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VAWAFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
| Ga0075017_1016749502 | 3300006059 | Watersheds | LARIVLENGFGEAPLSGYAILQIGVRVLIAMVAWAFLKTCWELGAVYYKRLCTFVVALRRFCREYWSRTAAV* |
| Ga0075030_1004279412 | 3300006162 | Watersheds | ATVAWAFLKTCGELGAVYYKKLCTFKVALRRLCRDYWGKTAAV* |
| Ga0075030_1014699822 | 3300006162 | Watersheds | RVLIAMVAWAFLKTCWELGTVYYKRLCTFVVALRRFCREYWSRTAAV* |
| Ga0070715_107442901 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | YATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0070712_1003445212 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | ATTVAWAFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
| Ga0066653_104343792 | 3300006791 | Soil | LKIDVGVLIATVAWAFLKTCWELGTVYCKRLCTFVVALRKFCRDYWSKTAAA* |
| Ga0075434_1021744742 | 3300006871 | Populus Rhizosphere | LLAATVAWAFLKTCGELGAVHYKKLCTFQVALRKFCRDYWGKAAAV* |
| Ga0073928_108190942 | 3300006893 | Iron-Sulfur Acid Spring | ALARIVLENGFGEAPLSVYAILQIGVRVLIAMAAWAILKTCWELGTAYYKRLCTFVGALRRFCREYWSRTAAV* |
| Ga0066710_1016760462 | 3300009012 | Grasslands Soil | AFGEAPLNGYAILTIGVRVLAATVAWAFLKTCWELGTVYYKKFCTFVGALRRFCRDYWSKTAAV |
| Ga0105237_112189541 | 3300009545 | Corn Rhizosphere | VVGAVPLGEFGFFKIAFGVLIATVACAFMKTCSELGAVYYKRLCTFVVALRKFCRDYWSKTAAA* |
| Ga0116124_11321252 | 3300009634 | Peatland | VLGDGLFSDYSTLKFGVVVVGATVAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0116117_10625881 | 3300009635 | Peatland | MGVLAATVAWAFLKTCWELGTFHYKRLCTFIGALRRFCRNYWSKTAAV* |
| Ga0116110_11316022 | 3300009643 | Peatland | ALARIVLENVFGAGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0116130_10803851 | 3300009762 | Peatland | AFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV* |
| Ga0074044_106119941 | 3300010343 | Bog Forest Soil | ARIVLESAFGEAPSSVYAFLQIGVRVLIVMVAWAILKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV* |
| Ga0126370_108767071 | 3300010358 | Tropical Forest Soil | SGYGILKIALGITAAMLAWAFLKTCWELGTVYYKRLCTFVVALRKFCRDYWSKTAAA* |
| Ga0126378_115401442 | 3300010361 | Tropical Forest Soil | LEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA* |
| Ga0126377_135066101 | 3300010362 | Tropical Forest Soil | VLIATVAWAFLKTCWELGALYYKRLCTFVVALRKFCRDYWSKTAAV* |
| Ga0126383_131829682 | 3300010398 | Tropical Forest Soil | LLVALARVVLEDAFGEGLFSGYSTLKIGVGVLAAMVAWAFLKTGWELGTVYYKRVRTFMGALRKFCRDY* |
| Ga0134122_122365482 | 3300010400 | Terrestrial Soil | GVVVVAATVAWAFLKTCWELGTVYYKRLCTFLGALRKFCRDYWSKTAAV* |
| Ga0134121_122245161 | 3300010401 | Terrestrial Soil | LENVFGDGLFGDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0137776_14185591 | 3300010937 | Sediment | RIVLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA* |
| Ga0137366_111966081 | 3300012354 | Vadose Zone Soil | AATVAWAFLKTCWELGTVHYKRLCTFVGALRRFCRDYWSKTAAV* |
| Ga0164300_108709692 | 3300012951 | Soil | WAFLKTCAELKTVYYKKLYTFKVALRKFCRDYWGKAAAV* |
| Ga0163162_133942342 | 3300013306 | Switchgrass Rhizosphere | WAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0181517_102494042 | 3300014160 | Bog | LDGYAILQIGVRVLAATVAWAFLKTCWELGTVHYKRLCTFVGALRKFCREYWSRTAAV* |
| Ga0181523_106471202 | 3300014165 | Bog | VRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV* |
| Ga0181531_103229871 | 3300014169 | Bog | AVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0163163_119555701 | 3300014325 | Switchgrass Rhizosphere | VAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0182016_100111978 | 3300014493 | Bog | GDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0182015_104156352 | 3300014495 | Palsa | DYSTLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
| Ga0182024_101605022 | 3300014501 | Permafrost | AFLKTCWELGAVYYRKLCTFKVALRKFCRDYWGKAAAV* |
| Ga0157377_113840382 | 3300014745 | Miscanthus Rhizosphere | ENGFGDGPLSGYGILKIGLGVLAATVTWAFLKPCLELWAVYYKRLCTFVGALRRFCRDYWSKTAAV* |
| Ga0132255_1016972402 | 3300015374 | Arabidopsis Rhizosphere | VALARIVLEDVVGAVPLGEFGFLKIGFGVLIATVAWAFLKTCWELGTVYCKRICTFVVALRKFCRDYWSKTAAV* |
| Ga0182033_113177291 | 3300016319 | Soil | VGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
| Ga0182038_104960181 | 3300016445 | Soil | FLKIGLGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA |
| Ga0187820_12797641 | 3300017924 | Freshwater Sediment | KFGVVVVAATLAWAFLKTGWELGTFHHKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0187856_11071722 | 3300017925 | Peatland | AILQIGVRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0187847_107517401 | 3300017948 | Peatland | ILTIGVGVLAATVAWAFLKTCWELGTVYYRRLCTFVGALRRFCREYWSRTAAV |
| Ga0181520_100195198 | 3300017988 | Bog | RIVLENAFGEAPSSVYANLQIGVRVLIVMAAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0187822_101873031 | 3300017994 | Freshwater Sediment | NVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHFKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0187865_11676782 | 3300018004 | Peatland | DIGVGVLAATVVWAFLKTCWELGTVHYKRLCTFAGALRRFCRDYWSKTAAV |
| Ga0187880_14673681 | 3300018016 | Peatland | IVLESAFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0187872_100137444 | 3300018017 | Peatland | AWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0187872_101514911 | 3300018017 | Peatland | PSSVYAFLQIGVRVLIVMAAWAFLKSCWELGTVHYKKLCTFVGALRRFCREYWSRTAAV |
| Ga0187889_101305272 | 3300018023 | Peatland | WAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0187890_107411292 | 3300018044 | Peatland | GTLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0187771_116649191 | 3300018088 | Tropical Peatland | MDNVFGEALLSGFGILKIGLGILVATAAWAFLKTCWELGTVYCRRLCTFVVALRKFCRDYWSKTAAV |
| Ga0182031_14288321 | 3300019787 | Bog | MRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0210404_106391212 | 3300021088 | Soil | FGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKSAAV |
| Ga0210408_114408261 | 3300021178 | Soil | SRIVLENVFGDGLFSDYATLKFGVVVVAATVAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0210388_112826431 | 3300021181 | Soil | TVAWAFLKTCWELGAVYYRRLCTFKVALRKFCRDYWGKAAAV |
| Ga0210394_115703041 | 3300021420 | Soil | ENVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0210410_107984541 | 3300021479 | Soil | KTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0224533_10849231 | 3300022526 | Soil | PSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0208455_10524901 | 3300025453 | Peatland | ARIVLESAFGEAPSSVYAFLQIGVRVLIVMAAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0208820_11452741 | 3300025576 | Peatland | KTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0209429_103433702 | 3300025864 | Arctic Peat Soil | SGYAILQIGVRVLIAMVAWAFLKTCWELGTVYYKRLCTFVVALRRFCREYWSRTAAV |
| Ga0207661_107610152 | 3300025944 | Corn Rhizosphere | LAATVAWAFLKTCGELGAVYYKKLRTFKVALRKFCRDYWGKAAAV |
| Ga0207698_118104641 | 3300026142 | Corn Rhizosphere | WAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0255357_10746321 | 3300026381 | Soil | IVLESAFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYRKLCTFVGALRRFCRDYWSKTAAV |
| Ga0209333_11307851 | 3300027676 | Forest Soil | ATVAWAFLKTCWELGAFHYKRLCTFVGALRRFCRNYWSKTAAV |
| Ga0209274_101981601 | 3300027853 | Soil | LAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
| Ga0255358_10569691 | 3300028069 | Soil | SAFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYRKLCTFVGALRRFFRDYWSKTAAV |
| Ga0137415_102698861 | 3300028536 | Vadose Zone Soil | AFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV |
| Ga0302202_102563052 | 3300028762 | Bog | IVLEDAHGEAPLDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0302198_100370342 | 3300028765 | Bog | LDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0302222_101592962 | 3300028798 | Palsa | LKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0302154_101287091 | 3300028882 | Bog | FLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0308309_114661991 | 3300028906 | Soil | FLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0311341_104149171 | 3300029908 | Bog | LVALARIVLEDAHGEAPLDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0311326_100900861 | 3300029917 | Bog | HGEAPLDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
| Ga0311340_103949702 | 3300029943 | Palsa | VVVAATLAWAFLKTGWELGMFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0311371_116064152 | 3300029951 | Palsa | LARIALENFFGDGVFSDYSTLKFGVVVLAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0302179_104525091 | 3300030058 | Palsa | LNGYDILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
| Ga0265746_10557422 | 3300030815 | Soil | ARIVLENAFGEAPLSGYSILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
| Ga0302314_112895052 | 3300030906 | Palsa | NFFGDGVFSDYSTLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0299913_112370121 | 3300031229 | Soil | AAATVAWAFLKTLWELGTAYHKKLCTFLTALRKFCREYWSSSTAAV |
| Ga0265325_104504111 | 3300031241 | Rhizosphere | ESVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0310915_113007781 | 3300031573 | Soil | VLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAV |
| Ga0306917_110006012 | 3300031719 | Soil | GAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA |
| Ga0310917_110093912 | 3300031833 | Soil | SEFGFLKIGFGVLIATVAWAFLKTCWELGTVYCKRLCTFVVALRKFCRDYWSKTAAA |
| Ga0306921_112012132 | 3300031912 | Soil | LVALARIVLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
| Ga0310916_116015572 | 3300031942 | Soil | IATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCREYWSKTAAA |
| Ga0308173_115269371 | 3300032074 | Soil | VAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
| Ga0318540_104350941 | 3300032094 | Soil | RIVLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
| Ga0335085_107867471 | 3300032770 | Soil | GFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
| Ga0335085_123918731 | 3300032770 | Soil | DNVLGEALLSGFGILKIGLGILAATLAWAFLKTCWELGTVYCRRLCTFVVALRKFCRDYWSKTAAV |
| Ga0335078_116498321 | 3300032805 | Soil | FLKIGIGVLIATVAWAFLKTCWELGAVYCKRLCTFVVALRKFCRDYWSKTAAA |
| Ga0335069_100263361 | 3300032893 | Soil | LEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA |
| Ga0335072_111370002 | 3300032898 | Soil | VLSGYGIFKIGLGVLAATVAWAFLKTSWELGTVYCKRLCTFVVALRKFCRDYWSKTAAV |
| Ga0335076_102752731 | 3300032955 | Soil | GILVATVAWAFLKTCWELGAVYCRRLCTFVVALRKFCRDYWSKTAAV |
| Ga0334816_047389_654_809 | 3300033819 | Soil | QIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0334837_031301_1_147 | 3300033823 | Soil | VGVLAATVVWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0334837_105950_3_221 | 3300033823 | Soil | LARIVLENVFGEAPLSGYAILKIGLGVLAATVAWAFLKTCWELGTVLYKRLCTFVGALRRFCRDFWSKTAAA |
| Ga0334848_046680_3_200 | 3300033827 | Soil | NAFGEAPSSVYAFLQIGVRVLIVMAAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0334810_119809_8_184 | 3300033890 | Soil | LSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
| Ga0370515_0085041_1216_1371 | 3300034163 | Untreated Peat Soil | KIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |