Basic Information | |
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Family ID | F087793 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 110 |
Average Sequence Length | 56 residues |
Representative Sequence | GVVVVAATVAWAFLKTCWELGTVYYKRLCTFLGALRKFCRDYWSKTAAV |
Number of Associated Samples | 106 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 93.64 % |
% of genes from short scaffolds (< 2000 bps) | 89.09 % |
Associated GOLD sequencing projects | 106 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.37 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (61.818 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (8.182 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.273 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (38.182 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 61.04% β-sheet: 0.00% Coil/Unstructured: 38.96% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Peatland Freshwater Sediment Sediment Iron-Sulfur Acid Spring Watersheds Soil Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Surface Soil Arctic Peat Soil Soil Grasslands Soil Soil Soil Soil Soil Soil Untreated Peat Soil Tropical Peatland Bog Forest Soil Bog Palsa Permafrost Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Soil Palsa Bog Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
INPhiseqgaiiFebDRAFT_1055483923 | 3300000364 | Soil | AATVAWAFFKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
JGI12635J15846_107749631 | 3300001593 | Forest Soil | YSILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV* |
Ga0066672_103827692 | 3300005167 | Soil | ATVAWAFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
Ga0070710_107074431 | 3300005437 | Corn, Switchgrass And Miscanthus Rhizosphere | WAFLKTCWELGTVYCKRLCTFVVALRKFCRDYWSKTAAA* |
Ga0070679_1012279592 | 3300005530 | Corn Rhizosphere | VALARIVLENVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0070731_107470542 | 3300005538 | Surface Soil | IGQMVMDNVFGEVLLNGFGMLKIGLGILAAMLAWAFLKTCWELGIVYCRRLCTFVVALRKFCRNYWSKTAAV* |
Ga0068855_1010400612 | 3300005563 | Corn Rhizosphere | VLKIALGLLAFTVAWAFLKTLWELGIAYHRKLCTFHAALRKFCREYWSSKAAAV* |
Ga0068854_1018811071 | 3300005578 | Corn Rhizosphere | AATLAWAFLKTGWELGTFHYKRLCTFVGALRIFCRDYWSKTAAV* |
Ga0068856_1026198081 | 3300005614 | Corn Rhizosphere | WAFLKTFWELGIAYHRKLCTFYAALRKFCREYWSSKAAAV* |
Ga0070764_106328172 | 3300005712 | Soil | ILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV* |
Ga0070766_112632161 | 3300005921 | Soil | GMGVLAATVAWAFLKTCWELGTFHYKRLCTFMGALRRFCRNYWSKTAAV* |
Ga0070717_108511971 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VAWAFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
Ga0075017_1016749502 | 3300006059 | Watersheds | LARIVLENGFGEAPLSGYAILQIGVRVLIAMVAWAFLKTCWELGAVYYKRLCTFVVALRRFCREYWSRTAAV* |
Ga0075030_1004279412 | 3300006162 | Watersheds | ATVAWAFLKTCGELGAVYYKKLCTFKVALRRLCRDYWGKTAAV* |
Ga0075030_1014699822 | 3300006162 | Watersheds | RVLIAMVAWAFLKTCWELGTVYYKRLCTFVVALRRFCREYWSRTAAV* |
Ga0070715_107442901 | 3300006163 | Corn, Switchgrass And Miscanthus Rhizosphere | YATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0070712_1003445212 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | ATTVAWAFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV* |
Ga0066653_104343792 | 3300006791 | Soil | LKIDVGVLIATVAWAFLKTCWELGTVYCKRLCTFVVALRKFCRDYWSKTAAA* |
Ga0075434_1021744742 | 3300006871 | Populus Rhizosphere | LLAATVAWAFLKTCGELGAVHYKKLCTFQVALRKFCRDYWGKAAAV* |
Ga0073928_108190942 | 3300006893 | Iron-Sulfur Acid Spring | ALARIVLENGFGEAPLSVYAILQIGVRVLIAMAAWAILKTCWELGTAYYKRLCTFVGALRRFCREYWSRTAAV* |
Ga0066710_1016760462 | 3300009012 | Grasslands Soil | AFGEAPLNGYAILTIGVRVLAATVAWAFLKTCWELGTVYYKKFCTFVGALRRFCRDYWSKTAAV |
Ga0105237_112189541 | 3300009545 | Corn Rhizosphere | VVGAVPLGEFGFFKIAFGVLIATVACAFMKTCSELGAVYYKRLCTFVVALRKFCRDYWSKTAAA* |
Ga0116124_11321252 | 3300009634 | Peatland | VLGDGLFSDYSTLKFGVVVVGATVAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0116117_10625881 | 3300009635 | Peatland | MGVLAATVAWAFLKTCWELGTFHYKRLCTFIGALRRFCRNYWSKTAAV* |
Ga0116110_11316022 | 3300009643 | Peatland | ALARIVLENVFGAGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0116130_10803851 | 3300009762 | Peatland | AFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV* |
Ga0074044_106119941 | 3300010343 | Bog Forest Soil | ARIVLESAFGEAPSSVYAFLQIGVRVLIVMVAWAILKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV* |
Ga0126370_108767071 | 3300010358 | Tropical Forest Soil | SGYGILKIALGITAAMLAWAFLKTCWELGTVYYKRLCTFVVALRKFCRDYWSKTAAA* |
Ga0126378_115401442 | 3300010361 | Tropical Forest Soil | LEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA* |
Ga0126377_135066101 | 3300010362 | Tropical Forest Soil | VLIATVAWAFLKTCWELGALYYKRLCTFVVALRKFCRDYWSKTAAV* |
Ga0126383_131829682 | 3300010398 | Tropical Forest Soil | LLVALARVVLEDAFGEGLFSGYSTLKIGVGVLAAMVAWAFLKTGWELGTVYYKRVRTFMGALRKFCRDY* |
Ga0134122_122365482 | 3300010400 | Terrestrial Soil | GVVVVAATVAWAFLKTCWELGTVYYKRLCTFLGALRKFCRDYWSKTAAV* |
Ga0134121_122245161 | 3300010401 | Terrestrial Soil | LENVFGDGLFGDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0137776_14185591 | 3300010937 | Sediment | RIVLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA* |
Ga0137366_111966081 | 3300012354 | Vadose Zone Soil | AATVAWAFLKTCWELGTVHYKRLCTFVGALRRFCRDYWSKTAAV* |
Ga0164300_108709692 | 3300012951 | Soil | WAFLKTCAELKTVYYKKLYTFKVALRKFCRDYWGKAAAV* |
Ga0163162_133942342 | 3300013306 | Switchgrass Rhizosphere | WAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0181517_102494042 | 3300014160 | Bog | LDGYAILQIGVRVLAATVAWAFLKTCWELGTVHYKRLCTFVGALRKFCREYWSRTAAV* |
Ga0181523_106471202 | 3300014165 | Bog | VRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV* |
Ga0181531_103229871 | 3300014169 | Bog | AVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0163163_119555701 | 3300014325 | Switchgrass Rhizosphere | VAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0182016_100111978 | 3300014493 | Bog | GDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0182015_104156352 | 3300014495 | Palsa | DYSTLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV* |
Ga0182024_101605022 | 3300014501 | Permafrost | AFLKTCWELGAVYYRKLCTFKVALRKFCRDYWGKAAAV* |
Ga0157377_113840382 | 3300014745 | Miscanthus Rhizosphere | ENGFGDGPLSGYGILKIGLGVLAATVTWAFLKPCLELWAVYYKRLCTFVGALRRFCRDYWSKTAAV* |
Ga0132255_1016972402 | 3300015374 | Arabidopsis Rhizosphere | VALARIVLEDVVGAVPLGEFGFLKIGFGVLIATVAWAFLKTCWELGTVYCKRICTFVVALRKFCRDYWSKTAAV* |
Ga0182033_113177291 | 3300016319 | Soil | VGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
Ga0182038_104960181 | 3300016445 | Soil | FLKIGLGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA |
Ga0187820_12797641 | 3300017924 | Freshwater Sediment | KFGVVVVAATLAWAFLKTGWELGTFHHKRLCTFVGALRKFCRDYWSKTAAV |
Ga0187856_11071722 | 3300017925 | Peatland | AILQIGVRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0187847_107517401 | 3300017948 | Peatland | ILTIGVGVLAATVAWAFLKTCWELGTVYYRRLCTFVGALRRFCREYWSRTAAV |
Ga0181520_100195198 | 3300017988 | Bog | RIVLENAFGEAPSSVYANLQIGVRVLIVMAAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0187822_101873031 | 3300017994 | Freshwater Sediment | NVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHFKRLCTFVGALRKFCRDYWSKTAAV |
Ga0187865_11676782 | 3300018004 | Peatland | DIGVGVLAATVVWAFLKTCWELGTVHYKRLCTFAGALRRFCRDYWSKTAAV |
Ga0187880_14673681 | 3300018016 | Peatland | IVLESAFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0187872_100137444 | 3300018017 | Peatland | AWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0187872_101514911 | 3300018017 | Peatland | PSSVYAFLQIGVRVLIVMAAWAFLKSCWELGTVHYKKLCTFVGALRRFCREYWSRTAAV |
Ga0187889_101305272 | 3300018023 | Peatland | WAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0187890_107411292 | 3300018044 | Peatland | GTLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0187771_116649191 | 3300018088 | Tropical Peatland | MDNVFGEALLSGFGILKIGLGILVATAAWAFLKTCWELGTVYCRRLCTFVVALRKFCRDYWSKTAAV |
Ga0182031_14288321 | 3300019787 | Bog | MRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0210404_106391212 | 3300021088 | Soil | FGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKSAAV |
Ga0210408_114408261 | 3300021178 | Soil | SRIVLENVFGDGLFSDYATLKFGVVVVAATVAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0210388_112826431 | 3300021181 | Soil | TVAWAFLKTCWELGAVYYRRLCTFKVALRKFCRDYWGKAAAV |
Ga0210394_115703041 | 3300021420 | Soil | ENVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0210410_107984541 | 3300021479 | Soil | KTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0224533_10849231 | 3300022526 | Soil | PSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0208455_10524901 | 3300025453 | Peatland | ARIVLESAFGEAPSSVYAFLQIGVRVLIVMAAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0208820_11452741 | 3300025576 | Peatland | KTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0209429_103433702 | 3300025864 | Arctic Peat Soil | SGYAILQIGVRVLIAMVAWAFLKTCWELGTVYYKRLCTFVVALRRFCREYWSRTAAV |
Ga0207661_107610152 | 3300025944 | Corn Rhizosphere | LAATVAWAFLKTCGELGAVYYKKLRTFKVALRKFCRDYWGKAAAV |
Ga0207698_118104641 | 3300026142 | Corn Rhizosphere | WAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0255357_10746321 | 3300026381 | Soil | IVLESAFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYRKLCTFVGALRRFCRDYWSKTAAV |
Ga0209333_11307851 | 3300027676 | Forest Soil | ATVAWAFLKTCWELGAFHYKRLCTFVGALRRFCRNYWSKTAAV |
Ga0209274_101981601 | 3300027853 | Soil | LAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
Ga0255358_10569691 | 3300028069 | Soil | SAFGEAPSSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYRKLCTFVGALRRFFRDYWSKTAAV |
Ga0137415_102698861 | 3300028536 | Vadose Zone Soil | AFLKTCGELGAVYYKKLCTFKVALRKFCRDYWGKAAAV |
Ga0302202_102563052 | 3300028762 | Bog | IVLEDAHGEAPLDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0302198_100370342 | 3300028765 | Bog | LDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0302222_101592962 | 3300028798 | Palsa | LKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0302154_101287091 | 3300028882 | Bog | FLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0308309_114661991 | 3300028906 | Soil | FLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0311341_104149171 | 3300029908 | Bog | LVALARIVLEDAHGEAPLDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0311326_100900861 | 3300029917 | Bog | HGEAPLDGYAILQIGMRVLAATVAWAFLKTCWELGTVYYKRLCTFVGALRKFCREYWSRTAAV |
Ga0311340_103949702 | 3300029943 | Palsa | VVVAATLAWAFLKTGWELGMFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0311371_116064152 | 3300029951 | Palsa | LARIALENFFGDGVFSDYSTLKFGVVVLAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0302179_104525091 | 3300030058 | Palsa | LNGYDILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
Ga0265746_10557422 | 3300030815 | Soil | ARIVLENAFGEAPLSGYSILKIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
Ga0302314_112895052 | 3300030906 | Palsa | NFFGDGVFSDYSTLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0299913_112370121 | 3300031229 | Soil | AAATVAWAFLKTLWELGTAYHKKLCTFLTALRKFCREYWSSSTAAV |
Ga0265325_104504111 | 3300031241 | Rhizosphere | ESVFGDGLFSDYATLKFGVVVVAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0310915_113007781 | 3300031573 | Soil | VLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAV |
Ga0306917_110006012 | 3300031719 | Soil | GAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA |
Ga0310917_110093912 | 3300031833 | Soil | SEFGFLKIGFGVLIATVAWAFLKTCWELGTVYCKRLCTFVVALRKFCRDYWSKTAAA |
Ga0306921_112012132 | 3300031912 | Soil | LVALARIVLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
Ga0310916_116015572 | 3300031942 | Soil | IATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCREYWSKTAAA |
Ga0308173_115269371 | 3300032074 | Soil | VAATLAWAFLKTGWELGTFHYKRLCTFVGALRKFCRDYWSKTAAV |
Ga0318540_104350941 | 3300032094 | Soil | RIVLEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
Ga0335085_107867471 | 3300032770 | Soil | GFLKIGFGVLIATVAWAFLKTCWELGAVYYKRLCTFVVALRKFCRDYWSKTAAA |
Ga0335085_123918731 | 3300032770 | Soil | DNVLGEALLSGFGILKIGLGILAATLAWAFLKTCWELGTVYCRRLCTFVVALRKFCRDYWSKTAAV |
Ga0335078_116498321 | 3300032805 | Soil | FLKIGIGVLIATVAWAFLKTCWELGAVYCKRLCTFVVALRKFCRDYWSKTAAA |
Ga0335069_100263361 | 3300032893 | Soil | LEDVVGAVPLSEFGFLKIGFGVLIATVAWAFLKTCWELGAVYYRRLCTFVVALRKFCRDYWSKTAAA |
Ga0335072_111370002 | 3300032898 | Soil | VLSGYGIFKIGLGVLAATVAWAFLKTSWELGTVYCKRLCTFVVALRKFCRDYWSKTAAV |
Ga0335076_102752731 | 3300032955 | Soil | GILVATVAWAFLKTCWELGAVYCRRLCTFVVALRKFCRDYWSKTAAV |
Ga0334816_047389_654_809 | 3300033819 | Soil | QIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0334837_031301_1_147 | 3300033823 | Soil | VGVLAATVVWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0334837_105950_3_221 | 3300033823 | Soil | LARIVLENVFGEAPLSGYAILKIGLGVLAATVAWAFLKTCWELGTVLYKRLCTFVGALRRFCRDFWSKTAAA |
Ga0334848_046680_3_200 | 3300033827 | Soil | NAFGEAPSSVYAFLQIGVRVLIVMAAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0334810_119809_8_184 | 3300033890 | Soil | LSVYAFLQIGVRVLIVMVAWAFLKTCWELGTVHYKKLCTFVGALRRFCRDYWSKTAAV |
Ga0370515_0085041_1216_1371 | 3300034163 | Untreated Peat Soil | KIGMGVLAATVAWAFLKTCWELGTFHYKRLCTFVGALRRFCRNYWSKTAAV |
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