Metagenome / Metatranscriptome Family F087789

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087789
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	50 residues
Representative Sequence	DPVRLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGRCY
Number of Associated Samples	99
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	98.18 %
% of genes from short scaffolds (< 2000 bps)	91.82 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (91.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (25.455 % of family members)
Environment Ontology (ENVO)	Unclassified (40.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline) (34.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.38% β-sheet: 2.60% Coil/Unstructured: 74.03%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF09351	DUF1993	13.64
PF03401	TctC	11.82
PF07883	Cupin_2	6.36
PF00793	DAHP_synth_1	3.64
PF01594	AI-2E_transport	2.73
PF00202	Aminotran_3	1.82
PF00857	Isochorismatase	1.82
PF01070	FMN_dh	1.82
PF13738	Pyr_redox_3	1.82
PF00296	Bac_luciferase	1.82
PF02826	2-Hacid_dh_C	1.82
PF00389	2-Hacid_dh	1.82
PF13602	ADH_zinc_N_2	1.82
PF13365	Trypsin_2	0.91
PF04239	DUF421	0.91
PF00753	Lactamase_B	0.91
PF00990	GGDEF	0.91
PF00004	AAA	0.91
PF03328	HpcH_HpaI	0.91
PF05726	Pirin_C	0.91
PF00378	ECH_1	0.91
PF05643	DUF799	0.91
PF09084	NMT1	0.91
PF00903	Glyoxalase	0.91
PF07228	SpoIIE	0.91
PF00114	Pilin	0.91
PF07991	IlvN	0.91
PF01292	Ni_hydr_CYTB	0.91
PF13561	adh_short_C2	0.91
PF00497	SBP_bac_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	11.82
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	2.73
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	1.82
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.82
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.82
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	1.82
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	1.82
COG0059	Ketol-acid reductoisomerase	Amino acid transport and metabolism [E]	1.82
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.91
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.91
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.91
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.91
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.91
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.91
COG2323	Uncharacterized membrane protein YcaP, DUF421 family	Function unknown [S]	0.91
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.91
COG3038	Cytochrome b561	Energy production and conversion [C]	0.91
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.91
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.91
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.91
COG4380	Uncharacterized conserved protein, DUF799 domain	Function unknown [S]	0.91
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.82 %
Unclassified	root	N/A	8.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.82 %
Unclassified	root	N/A	8.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.82 %
Unclassified	root	N/A	8.18 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.55 %
Unclassified	root	N/A	8.18 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.64 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	22.73 %
Unclassified	root	N/A	8.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.73 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.82 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	12.73 %
Unclassified	root	N/A	8.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.82 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.82 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.73 %
Unclassified	root	N/A	8.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.82 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.82 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.91 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.91 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.91 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.73 %
Unclassified	root	N/A	8.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.82 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.82 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.91 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.91 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.91 %
Nitrosospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	12.73 %
Unclassified	root	N/A	8.18 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.82 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.82 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	0.91 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.91 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	0.91 %
Nitrosospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira	0.91 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002562\|JGI25382J37095_10056979	All Organisms → cellular organisms → Bacteria → Proteobacteria	1490	Open in IMG/M
3300004145\|Ga0055489_10170911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	666	Open in IMG/M
3300004157\|Ga0062590_100704019	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300004633\|Ga0066395_10188762	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300004633\|Ga0066395_10392821	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300004808\|Ga0062381_10377277	Not Available	539	Open in IMG/M
3300005181\|Ga0066678_10419091	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300005456\|Ga0070678_100624270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	964	Open in IMG/M
3300005526\|Ga0073909_10574788	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300005844\|Ga0068862_102105454	Not Available	575	Open in IMG/M
3300006163\|Ga0070715_10909030	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300006173\|Ga0070716_100231428	All Organisms → cellular organisms → Bacteria → Proteobacteria	1248	Open in IMG/M
3300006196\|Ga0075422_10510050	Not Available	547	Open in IMG/M
3300006794\|Ga0066658_10239321	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300006845\|Ga0075421_102148840	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	591	Open in IMG/M
3300006846\|Ga0075430_101073208	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300006854\|Ga0075425_102114722	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300006871\|Ga0075434_102046339	All Organisms → cellular organisms → Bacteria → Proteobacteria	578	Open in IMG/M
3300006876\|Ga0079217_11456494	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300006904\|Ga0075424_100676046	All Organisms → cellular organisms → Bacteria → Proteobacteria	1102	Open in IMG/M
3300006914\|Ga0075436_100014924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5324	Open in IMG/M
3300006914\|Ga0075436_100211227	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	1376	Open in IMG/M
3300007004\|Ga0079218_11391310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
3300007255\|Ga0099791_10191685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	962	Open in IMG/M
3300009100\|Ga0075418_12166350	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300009147\|Ga0114129_13351330	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300009156\|Ga0111538_10761848	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300009159\|Ga0114978_10013421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosospira	6228	Open in IMG/M
3300009678\|Ga0105252_10503964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	558	Open in IMG/M
3300010041\|Ga0126312_11136035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	574	Open in IMG/M
3300010360\|Ga0126372_11908259	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300010399\|Ga0134127_10195606	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300010401\|Ga0134121_11036717	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300011270\|Ga0137391_10152419	All Organisms → cellular organisms → Bacteria	2014	Open in IMG/M
3300011403\|Ga0137313_1032950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	865	Open in IMG/M
3300011406\|Ga0137454_1096932	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300011409\|Ga0137323_1010310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	2172	Open in IMG/M
3300011413\|Ga0137333_1072874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	788	Open in IMG/M
3300011417\|Ga0137326_1133842	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300011421\|Ga0137462_1125144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	623	Open in IMG/M
3300011422\|Ga0137425_1014625	All Organisms → cellular organisms → Bacteria → Proteobacteria	1609	Open in IMG/M
3300011425\|Ga0137441_1152838	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300011434\|Ga0137464_1010972	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	2342	Open in IMG/M
3300011435\|Ga0137426_1052693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1070	Open in IMG/M
3300011443\|Ga0137457_1034225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1415	Open in IMG/M
3300011445\|Ga0137427_10389309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	581	Open in IMG/M
3300012041\|Ga0137430_1095695	All Organisms → cellular organisms → Bacteria → Proteobacteria	837	Open in IMG/M
3300012041\|Ga0137430_1242208	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300012129\|Ga0137345_1036812	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300012143\|Ga0137354_1054161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	641	Open in IMG/M
3300012143\|Ga0137354_1072885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	546	Open in IMG/M
3300012160\|Ga0137349_1064440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	662	Open in IMG/M
3300012161\|Ga0137336_1021639	Not Available	1139	Open in IMG/M
3300012161\|Ga0137336_1106384	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300012166\|Ga0137350_1049031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	821	Open in IMG/M
3300012172\|Ga0137320_1015572	All Organisms → cellular organisms → Bacteria → Proteobacteria	1491	Open in IMG/M
3300012175\|Ga0137321_1008706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1949	Open in IMG/M
3300012202\|Ga0137363_10430609	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1102	Open in IMG/M
3300012203\|Ga0137399_10862321	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300012203\|Ga0137399_10866247	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300012469\|Ga0150984_108432126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	795	Open in IMG/M
3300012918\|Ga0137396_10295953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1196	Open in IMG/M
3300012924\|Ga0137413_10568810	Not Available	844	Open in IMG/M
3300012944\|Ga0137410_10673602	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300012948\|Ga0126375_11581539	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300012986\|Ga0164304_11610530	Not Available	541	Open in IMG/M
3300014867\|Ga0180076_1041190	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300014867\|Ga0180076_1056700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	706	Open in IMG/M
3300014872\|Ga0180087_1075302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	649	Open in IMG/M
3300015241\|Ga0137418_11106645	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300015245\|Ga0137409_10703746	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300018070\|Ga0184631_10108766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1087	Open in IMG/M
3300018071\|Ga0184618_10042035	All Organisms → cellular organisms → Bacteria	1626	Open in IMG/M
3300018079\|Ga0184627_10359517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	761	Open in IMG/M
3300018084\|Ga0184629_10073347	All Organisms → cellular organisms → Bacteria → Proteobacteria	1622	Open in IMG/M
3300018422\|Ga0190265_10380334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1506	Open in IMG/M
3300019249\|Ga0184648_1415427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	981	Open in IMG/M
3300019255\|Ga0184643_1119795	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300019255\|Ga0184643_1179312	All Organisms → cellular organisms → Bacteria → Proteobacteria	1361	Open in IMG/M
3300020180\|Ga0163155_10124718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1444	Open in IMG/M
3300021081\|Ga0210379_10032398	All Organisms → cellular organisms → Bacteria → Proteobacteria	2028	Open in IMG/M
3300021363\|Ga0193699_10060127	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300021857\|Ga0213849_1229698	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300023184\|Ga0214919_10806626	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300025318\|Ga0209519_10408979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	774	Open in IMG/M
3300025911\|Ga0207654_10102385	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300025931\|Ga0207644_10743384	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300026277\|Ga0209350_1034861	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300026285\|Ga0209438_1211987	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300026297\|Ga0209237_1125650	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300026319\|Ga0209647_1141101	All Organisms → cellular organisms → Bacteria	1046	Open in IMG/M
3300026452\|Ga0256821_1047004	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300026529\|Ga0209806_1091977	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300027573\|Ga0208454_1010783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2293	Open in IMG/M
3300027655\|Ga0209388_1079331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	945	Open in IMG/M
3300027759\|Ga0209296_1349002	All Organisms → cellular organisms → Bacteria → Proteobacteria	570	Open in IMG/M
3300027909\|Ga0209382_11627519	All Organisms → cellular organisms → Bacteria → Nitrospirae	637	Open in IMG/M
3300027909\|Ga0209382_11940558	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	567	Open in IMG/M
3300031521\|Ga0311364_11274489	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300031538\|Ga0310888_10214258	Not Available	1065	Open in IMG/M
3300031716\|Ga0310813_10195144	All Organisms → cellular organisms → Bacteria	1657	Open in IMG/M
3300032013\|Ga0310906_10195558	Not Available	1222	Open in IMG/M
3300032068\|Ga0318553_10049179	All Organisms → cellular organisms → Bacteria	2072	Open in IMG/M
3300032180\|Ga0307471_100503359	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300032180\|Ga0307471_101132736	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300032180\|Ga0307471_101463825	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300032205\|Ga0307472_101761393	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300032211\|Ga0310896_10178891	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028	Open in IMG/M
3300033004\|Ga0335084_11762429	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.64%
Host-Associated	Host-Associated	16.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	43.64%
Aquatic	Environmental → Aquatic	40.00%
Plants	Host-Associated → Plants	16.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.73%
Sediment	Environmental → Aquatic → Sediment	29.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.55%
Freshwater	Environmental → Aquatic → Freshwater	10.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.82%
Marine	Environmental → Aquatic → Marine	0.91%
Peat	Environmental → Terrestrial → Peat	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	29.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.55%
Lake	Environmental → Aquatic → Freshwater → Lake	3.64%
Loam	Environmental → Terrestrial → Soil → Loam	3.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	29.09%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	3.64%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	25.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.55%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.64%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.91%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.91%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004145	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004808	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare1Fresh	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009678	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011403	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT166_2	Environmental	Open in IMG/M
3300011406	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2	Environmental	Open in IMG/M
3300011409	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT423_2	Environmental	Open in IMG/M
3300011413	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT231_2	Environmental	Open in IMG/M
3300011417	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2	Environmental	Open in IMG/M
3300011421	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT769_2	Environmental	Open in IMG/M
3300011422	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT640_2	Environmental	Open in IMG/M
3300011425	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT244_2	Environmental	Open in IMG/M
3300011434	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT814_2	Environmental	Open in IMG/M
3300011435	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT660_2	Environmental	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300011445	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT700_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012129	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT530_2	Environmental	Open in IMG/M
3300012143	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT790_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012161	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT300_2	Environmental	Open in IMG/M
3300012166	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT660_2	Environmental	Open in IMG/M
3300012172	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT366_2	Environmental	Open in IMG/M
3300012175	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT399_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014867	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT433_16_10D	Environmental	Open in IMG/M
3300014872	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10D	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019255	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020180	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.SP4.G1	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021857	Metatranscriptome of freshwater microbial communities from pre-fracked creek in Pennsylvania, United States - WE:C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023184	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026452	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PU4	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300027573	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027759	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J37095_100569791	3300002562	Grasslands Soil	SLACHYAGLDPASLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNGWRPDDGGQCH*
Ga0055489_101709111	3300004145	Natural And Restored Wetlands	IRMHAKDGQPGTPLNLTAREQSDIVVFLESLSTFSNPWRPEDSEQCH*
Ga0062590_1007040194	3300004157	Soil	GLDPVRLHAKDGQPARPLNLSAREQTDLVVFLESLSTFANPWRPDDDGQCH*
Ga0066395_101887622	3300004633	Tropical Forest Soil	RVHANDGQAVGAPDLTLREQSDLVVFLESLSTFANPWRPEDAGRCH*
Ga0066395_103928211	3300004633	Tropical Forest Soil	PVRLHAKDGRPATPLNFTPREQTDLVVFLESLSTFANPWRPDEGG*
Ga0062381_103772772	3300004808	Wetland Sediment	HYASVDPIRLHAKDGQPAKPLNLTVREQSDLVVFLESLSTFSNPWRPEDGGRCD*
Ga0066678_104190913	3300005181	Soil	HYAGLDPASLHAKDGRPAKPLDLTPREQTDLVVFLESLSTFSNPWRPDDGGQCH*
Ga0070678_1006242701	3300005456	Miscanthus Rhizosphere	PLRLHAKDGKRGTPLKLTTDEQRDLVVFLESLSTFNNGWRPDDGGPCR*
Ga0073909_105747882	3300005526	Surface Soil	RLHAKDGRPARPLNLTAREQTDLVVFLESLSTFANPWRPDDDGRCQ*
Ga0068862_1021054542	3300005844	Switchgrass Rhizosphere	DPVRLHAKDGKPGTPLKLSAAEQRDLVVFLESVSTFTNGWRPDDGGPCK*
Ga0070715_109090302	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	QVVRHYSGVDPASLRAKDGRPAKPLDLTPREQTDLVVFLESLSTFSNPWRPDDGGVCH*
Ga0070716_1002314282	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKDGKPANPLNLTPREQTDLVVFLESLSTFANPWRPDDGGRCD*
Ga0075422_105100501	3300006196	Populus Rhizosphere	HYSKIDPVRLHAKDGKRGTPLELSVAEQRDLVVFLESLSTFSNGWRPDDGGPCR*
Ga0066658_102393212	3300006794	Soil	RLHAKDGKPGTPLDLTADEQRDLVVFLESLSTFQNGWRPDDGGRCR*
Ga0075421_1021488402	3300006845	Populus Rhizosphere	IADVVRLHANDGQPAGAADLTAREQTDLVVFLESLSTFANPWRPEDAGRCQ*
Ga0075430_1010732082	3300006846	Populus Rhizosphere	VRHYSRLDPVRLHAGAGPGPLNLTTREQTDLVVFLESLSTFSNPWRPDDSGRCD*
Ga0075425_1021147221	3300006854	Populus Rhizosphere	HAKDGRPARPLNLTPQEQTDLVVFLESLSTFSNPWRPDDGGECR*
Ga0075434_1020463392	3300006871	Populus Rhizosphere	TLAEVVRHYANLDPIRLRMKDGKPANPLNLTPREQTDLVVFLESLSTFANPWRPDDGGRCD*
Ga0079217_114564942	3300006876	Agricultural Soil	YSDRDPIRMHAKDGKPAVPLKLAAAEQTDLLVFLESLSTFSNPWRPDDHGPCN*
Ga0075424_1006760461	3300006904	Populus Rhizosphere	VRLHAGDGQRAGAPNLSPREQTDLVVFLESLSTFSNPWRPEDAARCE*
Ga0075436_1000149241	3300006914	Populus Rhizosphere	ETIAEVVRVHANDGQAGGAPDLTPREQTDLVVFLESLSTFANPWRPEDAGRCH*
Ga0075436_1002112271	3300006914	Populus Rhizosphere	HAGDGQSAGAPSFTPREQTDLVVFLESLSTFANPWRPEDPSRCD*
Ga0079218_113913101	3300007004	Agricultural Soil	HYSELDPLRLHAKDGKRGTPLKLSAAEQRDLVVFLESLSTFAIGWRSDEQGRCN*
Ga0099791_101916851	3300007255	Vadose Zone Soil	EVVRHYASLDPVSLHAKDGRPAKPLALTPREQTDLIVFLQSLSTFSNPWRPDDGGQCR*
Ga0075418_121663502	3300009100	Populus Rhizosphere	ADGQPAGAPSLTPREQTDLVVFLESLSTFANPWRPEEASRCD*
Ga0114129_133513302	3300009147	Populus Rhizosphere	RLHAKDGRPASPLNLSPREQTDLVVFLESLSTFSNPWRPDDAGRCD*
Ga0111538_107618482	3300009156	Populus Rhizosphere	VRRHAADGQPAGAPSLTPREQTDLVVFLESLSTFANPWRPEEASRCD*
Ga0114978_100134218	3300009159	Freshwater Lake	VETIAEVVRHYADIDPISAHAKDGRPAVPLKLSLREQTDLVVFLESLSTFNNPWRPDDGGRCD*
Ga0105252_105039641	3300009678	Soil	YVGLDPALLHAKDGRPAQPLKLTASEQTDLVVFLESLSTFSNPWRPDDGGRCQ*
Ga0126312_111360351	3300010041	Serpentine Soil	AKDGKPVKPLNLTKEEQTDLVVFLESLSTFSNPWRPEDPNGRCY*
Ga0126372_119082592	3300010360	Tropical Forest Soil	VRLHAKDGGPARPLNLTPQEQTDLVVFLESLSTFANPWRPDEGGRCD*
Ga0134127_101956061	3300010399	Terrestrial Soil	LHANDGQAAGAPGLTPREQTDLVVFLESLSTFANPWRPEDAGRCH*
Ga0134121_110367173	3300010401	Terrestrial Soil	HAKDGRPARPLNLTAREQTDLVVFLESLSTFANPWRPDDDGRCQ*
Ga0137391_101524194	3300011270	Vadose Zone Soil	SLHAKDGRPAKPMNLTQREQTDLIVFLQSLSTFSNPWRPDDGGECR*
Ga0137313_10329501	3300011403	Soil	IAEVVRHYVGLDPALLHAKDGRPAQPLNLTASEQTDLVVFLESLSTFSNPWRPDDGGRCD
Ga0137454_10969322	3300011406	Soil	RLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGQCH*
Ga0137323_10103101	3300011409	Soil	HAKDGQPAKALNLTASEQTDLVVFLESLSTFSNPWRPEDGEQCH*
Ga0137333_10728742	3300011413	Soil	LDPVRLHAKDGRPAQPLNLTAREQTDLVVFLESLSTFSNPWRPDDGGRCH*
Ga0137326_11338421	3300011417	Soil	RHYSRVDPLRLHAKDGKRGTPLDLTAGEQADLVVFLESLSTFSNGWRPDDGGPCR*
Ga0137462_11251441	3300011421	Soil	LDPVRLHAKDGRPAQPLNLTAREQTDLVVFLESLSTFSNPWRPDDGGRCQ*
Ga0137425_10146253	3300011422	Soil	KDGRPAKPLNLTPREQSDLVVFLESLSTFSNPWRPDDGGECH*
Ga0137441_11528382	3300011425	Soil	VDPVRLHAKDGRPARPLNLTPREQTDLIVFLESLSTFSNPWRPDDGGLCR*
Ga0137464_10109721	3300011434	Soil	HYVGLDPALLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPEDGGRCD*
Ga0137426_10526932	3300011435	Soil	AVLDPVRLHAKDGRPAQPLNLTASEQTDLVVFLESLSTFSNPWRPDDGGRCD*
Ga0137457_10342253	3300011443	Soil	YVGLDPALLHAKDGRPAQPLNLTAREQTDLVVFLESLSTFSNPWRPDDGGRCQ*
Ga0137427_103893091	3300011445	Soil	HAKDGQPAQPLNLTAGEQTDLVVFLESLSTFSNPWRAEDHGQCH*
Ga0137430_10956951	3300012041	Soil	VRHYASRDPVRMHAKDGLPAKPLNLTAREQSDLVVFLESLSTFSNPWRPEDDGQCR*
Ga0137430_12422081	3300012041	Soil	KDGRPAQPLNLTASEQTDLVVFLESLSTFSNPWRPDDGGRCD*
Ga0137345_10368122	3300012129	Soil	VGLDPALLHAKDGRPAQPLNLTAREQTDLVVFLESLSTFSNPWRPDDGGRCQ*
Ga0137354_10541613	3300012143	Soil	DLDPVRLHAKDGQPAKALNLTASEQTDLVVFLESLSTFSNPWRPEDGEQCH*
Ga0137354_10728852	3300012143	Soil	HAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGRCQ*
Ga0137349_10644401	3300012160	Soil	DPALLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGRCY*
Ga0137336_10216391	3300012161	Soil	HYADVDPVRLHAKDGRPARPLNLTSREQTDLIVFLESLSTFSNPWRPDDGGLCR*
Ga0137336_11063841	3300012161	Soil	LDPALLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPEDGGRCD*
Ga0137350_10490311	3300012166	Soil	VGLDPALLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPEDGGRCD*
Ga0137320_10155721	3300012172	Soil	SRDPVRMHAKDGLPAKPLNLTAREQSDLVVFLESLSTFSNPWRPEDDGQCR*
Ga0137321_10087061	3300012175	Soil	PALLHAKDGRPAQPLNLTAREQTDLVVFLESLSTFSNPWRPDDGGRCQ*
Ga0137363_104306091	3300012202	Vadose Zone Soil	ASLDPVRLHAKDGRPAKPLALTPREQTDLIVFLQSLSTFSNPWRPDDGGQCR*
Ga0137399_108623213	3300012203	Vadose Zone Soil	LHAKDGRPARPLNLTPREQTDLVVFLESLSTFSNGWRPDDGGQCH*
Ga0137399_108662473	3300012203	Vadose Zone Soil	VRHYAALDTASLHAKDGRPAKPLDLTPREQTDLVVFLESLSTFSNSWRPDDGGQCH*
Ga0150984_1084321262	3300012469	Avena Fatua Rhizosphere	VRHYSELDPLRLHAKDGKRGTPLKLTTDEQRDLVVFLESLSTFNNGWRPDDGGPCR*
Ga0137396_102959531	3300012918	Vadose Zone Soil	LHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGQCY*
Ga0137413_105688102	3300012924	Vadose Zone Soil	LDPIGLHAKDGRPAKPLDLSAREQTDLIVFLQSLSTFSNPWRPDDGGECR*
Ga0137410_106736021	3300012944	Vadose Zone Soil	LAEVVRHYADLDPVSLHAKDGRPAKPLALTPREQTDLIVFLQSLSTFSNPWRPDDGGECR
Ga0126375_115815393	3300012948	Tropical Forest Soil	GLDPVRLHAKDGQPGRPLNLSSREQTDLVVFLESLSTFANPWRPDDNGRCQ*
Ga0164304_116105302	3300012986	Soil	VSLHAKDGRPAKPLNLTPREQTDLVAFLQSLSTFSNSWRPDDGGQCR*
Ga0180076_10411901	3300014867	Soil	NTIAEVVRHYASRDPMRMHAKDGLPAKPLNLTAREQSDLVVFLESLSTFSNPWRPEDDGQCR*
Ga0180076_10567002	3300014867	Soil	YVELDPVRLHAKDGRPAQPLNLTPREQTDLVVFLESLSTFSNPWRPEDGGRCD*
Ga0180087_10753021	3300014872	Soil	PSVCTKDGQPARPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGRCH*
Ga0137418_111066452	3300015241	Vadose Zone Soil	YAGLDPVALHAKDGRTAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGQCH*
Ga0137409_107037461	3300015245	Vadose Zone Soil	RLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGQCY*
Ga0184631_101087663	3300018070	Groundwater Sediment	DPVRLHAKDGRPAKPLDLTPREQTDLVVFLESLSTFSSPWRPDDDAQCH
Ga0184618_100420353	3300018071	Groundwater Sediment	HAKDGRPAKPLDLTPREQTDLVVFLESLSTFSNPWRPDDGGQCH
Ga0184627_103595171	3300018079	Groundwater Sediment	YAALDPVRLHAKDGQPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDEGGECR
Ga0184629_100733471	3300018084	Groundwater Sediment	DLDPVRLHAKDGRPAKPLDLTPSEQTDLVVFLESLSTFSNPWRPDDDAQCH
Ga0190265_103803343	3300018422	Soil	PLRLRARDGKRGTPLRLSAAEQRDLVVFLESLSTFANGWRPDEGGRCK
Ga0184648_14154271	3300019249	Groundwater Sediment	HYSDLDPVRLHAKDGRPAKPLNLTAREQTDLVVFLESLSTFSNPWRPDDGGRCQ
Ga0184643_11197953	3300019255	Groundwater Sediment	LHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGQCY
Ga0184643_11793123	3300019255	Groundwater Sediment	GLHAKDGRPAKPLDLTEREQTDLVVFLQSLSTFSNPWRPDDGGQCR
Ga0163155_101247183	3300020180	Freshwater Microbial Mat	HGPWPIPAKNTQAAKPLNLTAREQTDLVVFLETLSAFSNPWRPDDNGRCD
Ga0210379_100323984	3300021081	Groundwater Sediment	DPVRLHAKDGRPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGRCY
Ga0193699_100601273	3300021363	Soil	AKDGRPARPLNLTREEQTDLLVFLESLSTFSNPWRPEDGGQCR
Ga0213849_12296982	3300021857	Watersheds	HARDGRPAVPLKLSKAEQTDLVVFLESLSTFNNPWRPDDGGRCD
Ga0214919_108066261	3300023184	Freshwater	DVDPVRAHAKDGRPAVPLNLTPREQTDLVVFLESLSTFNNPWRPDDGGRCD
Ga0209519_104089792	3300025318	Soil	MHAKDGAPARPLNLTVREQSDLVVFLESLSTFSNPWRPEDTEQCH
Ga0207654_101023855	3300025911	Corn Rhizosphere	LHAKDGQPARPLNLSAREQTDLVVFLESLSTFANPWRPDDDGQCH
Ga0207644_107433843	3300025931	Switchgrass Rhizosphere	HAKDGRPARPLNLTAREQTDLVVFLESLSTFANPWRPDDDGRCQ
Ga0209350_10348611	3300026277	Grasslands Soil	LAEVVRHYSGVDPASLRAKDGRPGKPLDLTPREQTDLVVFLESLSTFSNPWRPDDGGQCY
Ga0209438_12119872	3300026285	Grasslands Soil	EVVRLHANDGQHAGALNLTPREQTDLVVFLESLSTFSNPWRPEDAARCE
Ga0209237_11256501	3300026297	Grasslands Soil	DPASLRAKDGRPAKPLNLTREEQTDLVVFLESLSTFSNGWRPDDGGQCH
Ga0209647_11411013	3300026319	Grasslands Soil	PVRLHAKDGGPAKPLNLTPREQTDLVVFLESLSTFSNPWRPDDGGQCY
Ga0256821_10470041	3300026452	Sediment	EVVRHYASLDPVSLHAKDGKPAKPLNLTREEQTDLVVFLQSLSTFTNSWRPDDGGQCR
Ga0209806_10919771	3300026529	Soil	HAKDGRPAKPLNLTREEQTDLVVFLESLSTFSNGWRPDDGGQCH
Ga0208454_10107831	3300027573	Soil	TLRLHAKDGRPAKPLNLTPREQSDLVVFLESLSTFSNPWRPDDGGECR
Ga0209388_10793311	3300027655	Vadose Zone Soil	DPIRLHAKDGRPAKPLNLTREEQTDLVVFLESLSTFSNPWRPDDGGQCR
Ga0209296_13490021	3300027759	Freshwater Lake	ADVDPVRAHAKDGRPAVPLNLTPREQTDLVVFLESLSTFNNPWRPDDGGRCD
Ga0209382_116275191	3300027909	Populus Rhizosphere	ARLLAKDGRPARPLNLTAREQTELVVFLESLSTFNNPWRPEDRARCH
Ga0209382_119405581	3300027909	Populus Rhizosphere	IADVVRLHANDGQPAGAADLTAREQTDLVVFLESLSTFANPWRPEDAGRCQ
Ga0311364_112744892	3300031521	Fen	LDPVRMHAKDGRPAIPLKLTTAEQSDLVVFLESLSTFSNPWRPEDGVQCR
Ga0310888_102142582	3300031538	Soil	YSKIDPVRLHAKDGKRGTPLELSVAEQRDLVVFLESLSTFSNGWRPDDGGPCR
Ga0310813_101951443	3300031716	Soil	SLNDVVRHYSGIDPVRLHAKDGKPGTPLALTVAEQRDLVVFLESLSTFSNAWRPDDGGPC
Ga0310900_101616631	3300031908	Soil	GHARAPGKDTQKLQPLNLSEREQKDLVVFLESLNTFSNPWRPEDSGRCQ
Ga0310906_101955582	3300032013	Soil	DSLDEVVRHYSKIDPVRLHAKDGKRGTPLELSVAEQRDLVVFLESLSTFSNGWRPDDGGPCR
Ga0318553_100491791	3300032068	Soil	VVRRHAGDGQPAGAPALTAREQTELVVFLESLSTFANPWRPEDASRCH
Ga0307471_1005033593	3300032180	Hardwood Forest Soil	VVRLHASDGQRAGAPNLTPREQTDLVVFLESLSTFANPWRPEDAGRCE
Ga0307471_1011327361	3300032180	Hardwood Forest Soil	AALDTASLRAKDGRPAKPLNLTREEQTDLVVFLESLSTFSNSWRPDDGGQCY
Ga0307471_1014638251	3300032180	Hardwood Forest Soil	LDPVRLHAKDGRPAKPLNLTPEEQTELVVFLQSLSTFSNSWRPDDGGQCY
Ga0307472_1017613931	3300032205	Hardwood Forest Soil	EVVRLHANDGQPAGAADLTVREQTDLVVFLESLSTFANPWRPDDAGRCH
Ga0310896_101788911	3300032211	Soil	YSGLDPVRLHAKDGRPARPLNLTAREQTDLVVFLESLSTFANPWRPEEASRCD
Ga0335084_117624292	3300033004	Soil	AALDPVRLHAKDGQPGEPLNLTPREQTDLVVFLESLSTFSNPWRPEDGSQCQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087789

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences