Metagenome / Metatranscriptome Family F087786

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087786
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	43 residues
Representative Sequence	GAIIGVIMSITMPWEGWSDPQAFVDMFERIDQALNLLEAGLPL
Number of Associated Samples	97
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.91 %
% of genes near scaffold ends (potentially truncated)	91.82 %
% of genes from short scaffolds (< 2000 bps)	96.36 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.455 % of family members)
Environment Ontology (ENVO)	Unclassified (20.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.85% β-sheet: 0.00% Coil/Unstructured: 59.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF10011	DUF2254	14.55
PF12831	FAD_oxidored	10.91
PF00652	Ricin_B_lectin	6.36
PF03358	FMN_red	6.36
PF00440	TetR_N	2.73
PF13302	Acetyltransf_3	1.82
PF00296	Bac_luciferase	1.82
PF00920	ILVD_EDD	1.82
PF02653	BPD_transp_2	0.91
PF01545	Cation_efflux	0.91
PF07690	MFS_1	0.91
PF08241	Methyltransf_11	0.91
PF13751	DDE_Tnp_1_6	0.91
PF04978	DUF664	0.91
PF01989	AcnX_swivel_put	0.91
PF05598	DUF772	0.91
PF03795	YCII	0.91
PF02627	CMD	0.91
PF00072	Response_reg	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	3.64
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.82
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.91
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.91
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.91
COG1786	Mevalonate 5-phosphate dehydratase subunit 2, swiveling domain (modified mevalonate pathway)	Lipid transport and metabolism [I]	0.91
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.91
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.00 %
Unclassified	root	N/A	40.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.00 %
Unclassified	root	N/A	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.45 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.36 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.64 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.82 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.91 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.64 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.82 %
Eubacteriales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.82 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1.82 %
Clostridiales Family XVII. Incertae Sedis	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis	0.91 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Nocardia seriolae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia seriolae	1.82 %
Amycolatopsis taiwanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis taiwanensis	0.91 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.91 %
Sulfobacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis → Sulfobacillus	0.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.00 %
Nocardia seriolae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia seriolae	1.82 %
Streptomyces sp. Ncost-T10-10d	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Ncost-T10-10d	0.91 %
Sulfobacillus thermosulfidooxidans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis → Sulfobacillus → Sulfobacillus thermosulfidooxidans	0.91 %
Amycolatopsis taiwanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis taiwanensis	0.91 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559006\|FI_contig05961	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1309	Open in IMG/M
2170459021\|G14TP7Y02FYKLA	Not Available	561	Open in IMG/M
3300003368\|JGI26340J50214_10141185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300004092\|Ga0062389_102133547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300004152\|Ga0062386_101206810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	629	Open in IMG/M
3300005334\|Ga0068869_101082901	Not Available	701	Open in IMG/M
3300005434\|Ga0070709_10656067	Not Available	813	Open in IMG/M
3300005434\|Ga0070709_11304935	Not Available	585	Open in IMG/M
3300005434\|Ga0070709_11732401	Not Available	510	Open in IMG/M
3300005435\|Ga0070714_101425110	Not Available	676	Open in IMG/M
3300005437\|Ga0070710_10737072	Not Available	698	Open in IMG/M
3300005456\|Ga0070678_100185319	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300005537\|Ga0070730_10555874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	734	Open in IMG/M
3300005540\|Ga0066697_10673775	Not Available	568	Open in IMG/M
3300005764\|Ga0066903_104851500	Not Available	715	Open in IMG/M
3300005843\|Ga0068860_101958765	Not Available	607	Open in IMG/M
3300006028\|Ga0070717_10896007	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300006028\|Ga0070717_11603703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300006163\|Ga0070715_10928153	Not Available	538	Open in IMG/M
3300006176\|Ga0070765_100074445	All Organisms → cellular organisms → Bacteria	2860	Open in IMG/M
3300006755\|Ga0079222_10456346	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300006804\|Ga0079221_11089449	All Organisms → cellular organisms → Bacteria → Terrabacteria group	610	Open in IMG/M
3300006854\|Ga0075425_100959284	Not Available	976	Open in IMG/M
3300006893\|Ga0073928_10742660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis → Sulfobacillus → Sulfobacillus thermosulfidooxidans	682	Open in IMG/M
3300006893\|Ga0073928_11198700	Not Available	511	Open in IMG/M
3300009012\|Ga0066710_104847536	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300009137\|Ga0066709_100671502	Not Available	1486	Open in IMG/M
3300009162\|Ga0075423_11030523	Not Available	875	Open in IMG/M
3300009176\|Ga0105242_10231687	All Organisms → cellular organisms → Bacteria	1655	Open in IMG/M
3300009525\|Ga0116220_10196303	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300009698\|Ga0116216_10480981	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300010371\|Ga0134125_12346065	Not Available	580	Open in IMG/M
3300010379\|Ga0136449_100685336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1723	Open in IMG/M
3300010858\|Ga0126345_1161696	Not Available	694	Open in IMG/M
3300010864\|Ga0126357_1123881	Not Available	630	Open in IMG/M
3300010880\|Ga0126350_11835478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
3300012203\|Ga0137399_11586259	Not Available	542	Open in IMG/M
3300012929\|Ga0137404_11195649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300012929\|Ga0137404_11636869	Not Available	597	Open in IMG/M
3300012986\|Ga0164304_11116946	Not Available	632	Open in IMG/M
3300013105\|Ga0157369_12167467	Not Available	563	Open in IMG/M
3300013306\|Ga0163162_10226589	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300013306\|Ga0163162_11617720	Not Available	739	Open in IMG/M
3300015264\|Ga0137403_11182640	Not Available	610	Open in IMG/M
3300015374\|Ga0132255_104344524	Not Available	601	Open in IMG/M
3300016319\|Ga0182033_10839257	Not Available	811	Open in IMG/M
3300016404\|Ga0182037_10906132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	765	Open in IMG/M
3300017823\|Ga0187818_10304107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	701	Open in IMG/M
3300017926\|Ga0187807_1029169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1708	Open in IMG/M
3300017995\|Ga0187816_10050772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1732	Open in IMG/M
3300018034\|Ga0187863_10434305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300018047\|Ga0187859_10765620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia seriolae	552	Open in IMG/M
3300018085\|Ga0187772_10600226	Not Available	783	Open in IMG/M
3300020580\|Ga0210403_10308300	Not Available	1297	Open in IMG/M
3300020580\|Ga0210403_10628758	Not Available	865	Open in IMG/M
3300021180\|Ga0210396_10246667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1588	Open in IMG/M
3300021180\|Ga0210396_11598100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300021401\|Ga0210393_11173566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	619	Open in IMG/M
3300021405\|Ga0210387_10271441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1487	Open in IMG/M
3300024249\|Ga0247676_1006747	All Organisms → cellular organisms → Bacteria	1721	Open in IMG/M
3300024317\|Ga0247660_1016548	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300025134\|Ga0207416_1197602	All Organisms → cellular organisms → Bacteria → Terrabacteria group	632	Open in IMG/M
3300025898\|Ga0207692_10129291	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300025904\|Ga0207647_10301341	Not Available	913	Open in IMG/M
3300025915\|Ga0207693_10331531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1191	Open in IMG/M
3300025915\|Ga0207693_10859024	Not Available	697	Open in IMG/M
3300025921\|Ga0207652_10147048	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300025942\|Ga0207689_11417691	Not Available	582	Open in IMG/M
3300026309\|Ga0209055_1044629	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1941	Open in IMG/M
3300027047\|Ga0208730_1009842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1015	Open in IMG/M
3300027063\|Ga0207762_1037931	Not Available	721	Open in IMG/M
3300027812\|Ga0209656_10042152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis taiwanensis	2633	Open in IMG/M
3300027882\|Ga0209590_10097727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1748	Open in IMG/M
3300027889\|Ga0209380_10652501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	607	Open in IMG/M
3300028863\|Ga0302218_10154045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300029944\|Ga0311352_10987572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	648	Open in IMG/M
3300030056\|Ga0302181_10399088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Ncost-T10-10d	593	Open in IMG/M
3300030057\|Ga0302176_10374954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	573	Open in IMG/M
3300030399\|Ga0311353_10533746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1035	Open in IMG/M
3300030524\|Ga0311357_11818256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia seriolae	506	Open in IMG/M
3300030739\|Ga0302311_10401223	Not Available	965	Open in IMG/M
3300030743\|Ga0265461_10246763	Not Available	1172	Open in IMG/M
3300031525\|Ga0302326_10912401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1247	Open in IMG/M
3300031549\|Ga0318571_10453688	Not Available	509	Open in IMG/M
3300031564\|Ga0318573_10415258	Not Available	723	Open in IMG/M
3300031680\|Ga0318574_10024796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2971	Open in IMG/M
3300031713\|Ga0318496_10549259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300031723\|Ga0318493_10811943	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300031747\|Ga0318502_10739347	Not Available	595	Open in IMG/M
3300031753\|Ga0307477_10194936	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300031754\|Ga0307475_10572453	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300031764\|Ga0318535_10501796	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031765\|Ga0318554_10072125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1915	Open in IMG/M
3300031805\|Ga0318497_10455411	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300031805\|Ga0318497_10544914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	650	Open in IMG/M
3300031821\|Ga0318567_10400454	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	778	Open in IMG/M
3300031831\|Ga0318564_10136710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1092	Open in IMG/M
3300031833\|Ga0310917_10996980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	562	Open in IMG/M
3300031896\|Ga0318551_10190952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1130	Open in IMG/M
3300031939\|Ga0308174_11819005	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300031942\|Ga0310916_11072127	Not Available	670	Open in IMG/M
3300031954\|Ga0306926_11739279	Not Available	710	Open in IMG/M
3300031954\|Ga0306926_12889919	Not Available	516	Open in IMG/M
3300032009\|Ga0318563_10280363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300032009\|Ga0318563_10515190	Not Available	646	Open in IMG/M
3300032066\|Ga0318514_10700098	Not Available	539	Open in IMG/M
3300032770\|Ga0335085_10808159	Not Available	1031	Open in IMG/M
3300032770\|Ga0335085_12069161	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300033134\|Ga0335073_11407779	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300033290\|Ga0318519_10156596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1277	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.18%
Host-Associated	Host-Associated	10.91%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.27%
Aquatic	Environmental → Aquatic	10.91%
Plants	Host-Associated → Plants	10.91%
Solid Waste	Engineered → Solid Waste	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.00%
Freshwater	Environmental → Aquatic → Freshwater	8.18%
Peat	Environmental → Terrestrial → Peat	7.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.64%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.73%
Grass	Engineered → Solid Waste → Grass	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.91%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.18%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.45%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Composting	Engineered → Solid Waste → Grass → Composting	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.73%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.09%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	7.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.55%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.73%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.73%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.73%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.73%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559006	Grass soil microbial communities from Rothamsted Park, UK - FI (heavy metals 2g/kg) assembled	Environmental	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010864	Boreal forest soil eukaryotic communities from Alaska, USA - W3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300024249	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK17	Environmental	Open in IMG/M
3300024317	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK01	Environmental	Open in IMG/M
3300025134	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028863	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_1	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030057	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FI_00620570	2166559006	Grass Soil	MSITMPWEGWSSDRQAIVDMFERIDQALNLLEAGLPL
4NP_04066530	2170459021	Switchgrass, Maize And Mischanthus Litter	VAGAIIGVIMSITMPWEGWSSDQQIVDMFARIDQALALLEAGLPL
JGI26340J50214_101411852	3300003368	Bog Forest Soil	MGDAVVGVIMSVTMPWEGWTERTSVEDTFGRIDEALGLLEAGLPL*
Ga0062389_1021335472	3300004092	Bog Forest Soil	AGAIIGVIMSITMPWDGWSDRQTIADTFARIDQALALLEVGLPL*
Ga0062386_1012068102	3300004152	Bog Forest Soil	IGVIMSITMPWDGWSDRQTMQSTFQRIDQALGLLEAGLPL*
Ga0068869_1010829012	3300005334	Miscanthus Rhizosphere	DDLAVRTLAGAIIGVIMSITMPWEGWSDGQAFVDMFERVDQALNLLEAGLPL*
Ga0070709_106560672	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	IGVIMSITMPWEGWSDPQAFVYMFERVDQALNLLEAGLPL*
Ga0070709_113049352	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ADDLAVRTLAGAIIGVIMSITMPWEGWSDPQGFVDMFERVDQALNLLEAGLPL*
Ga0070709_117324012	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	ADDLAVRTLAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0070714_1014251102	3300005435	Agricultural Soil	GAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0070710_107370722	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	PADDLAVRTLAGAIIGVIMSITMPWEGWSDPQAFADTFERIDQALNLLEAGLPL*
Ga0070678_1001853193	3300005456	Miscanthus Rhizosphere	PADDLAVRTLAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0070730_105558741	3300005537	Surface Soil	VIMSITMPWEGWSEGRSFEDMFGRIDEALAFLEAGLPL*
Ga0066697_106737751	3300005540	Soil	ITMPWQGWSDPQAFEDMFERVDQALNLLEAGLPL*
Ga0066903_1048515001	3300005764	Tropical Forest Soil	AGAIIGVIMSITMPWEGWSSDRQTIVDMFERINQALGLLEDGLPL*
Ga0068860_1019587651	3300005843	Switchgrass Rhizosphere	RPADDLAVRTLAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0070717_108960073	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MMSITMPWHGWSSDMQTIEDVFGRIDQALALLEAGLPL*
Ga0070717_116037032	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	IIGVIMSVTMPWEGWSDGQSFEDMFGRIDQALALLEAGLPL*
Ga0070715_109281531	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	RTLAGAIIGVIMSITMPWEGWSDGQAFVDTFERIDQALNLLEAGLPL*
Ga0070765_1000744451	3300006176	Soil	GAIIGVIMSITLPWDGWSDPQNIKETFARIDTALGLLEAGLPL*
Ga0079222_104563463	3300006755	Agricultural Soil	AGAIIGVIMSITMPWEGWTDPQAFMDTFERIDQALNLLEAGLPL*
Ga0079221_110894491	3300006804	Agricultural Soil	AMAGGFIGVILSVTLPVEGWPGDDQSIIAMFERIDQALALLEAGLPL*
Ga0075425_1009592843	3300006854	Populus Rhizosphere	LAVRTLAGAIIGVIMSITMPWEGWSDRQAIVDMFERIDQALNLLEAGLPL*
Ga0073928_107426602	3300006893	Iron-Sulfur Acid Spring	VAGAIIGVIMSITIPWENWSDGTSFEDTFARIDEALALLEAGLPL*
Ga0073928_111987001	3300006893	Iron-Sulfur Acid Spring	MSITIPWENWSDGTSFEDTFARIDEALALLEAGLPL*
Ga0066710_1048475361	3300009012	Grasslands Soil	IGVMMSLTMPWHGWASDMQTIEDLLGRIDQALALLEAGLPL
Ga0066709_1006715021	3300009137	Grasslands Soil	MCITMPWEGGSDPKAFVYMFEGVDQGLNLLEAGLPL*
Ga0075423_110305231	3300009162	Populus Rhizosphere	VIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0105242_102316873	3300009176	Miscanthus Rhizosphere	IIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0116220_101963032	3300009525	Peatlands Soil	MSITMPWEDWSSDRRTIEDMFERIDQALALLEAGLPL*
Ga0116216_104809812	3300009698	Peatlands Soil	VIMAITMPWEDWSERPSAFEDSFGRIDEALALLEAGLPL*
Ga0134125_123460652	3300010371	Terrestrial Soil	AVRTLAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0136449_1006853361	3300010379	Peatlands Soil	RTVAGAIIGVIMAITLPWEGWSEQVSLEDTFARIDKALALLEAGLPL*
Ga0126345_11616961	3300010858	Boreal Forest Soil	GVIMSVTMPWEGWSDGKSFEDMFRRIDQALALLEAGLPL*
Ga0126357_11238812	3300010864	Boreal Forest Soil	VGVVMSVTMPWEGWSQAPNFEDMFVRIDEALALLEAGLPL*
Ga0126350_118354782	3300010880	Boreal Forest Soil	SITLPWSGWADRRSMQDTFGRIDRALALLEAGLPL*
Ga0137399_115862591	3300012203	Vadose Zone Soil	VIMSITMPWEGWSDPEAFVDMFERVDQALNLLEAGLPL*
Ga0137404_111956491	3300012929	Vadose Zone Soil	IGVMMALTMPWDGWTTDRQAIADLFGRVDQALALLEAGLPL*
Ga0137404_116368691	3300012929	Vadose Zone Soil	VRTLAGAIIGVIMSITMPWEGWSDPAAFVDMFERVDQALNLLEAGLPL*
Ga0164304_111169462	3300012986	Soil	DDLAVRTLAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0157369_121674672	3300013105	Corn Rhizosphere	GAIIGVIMSITMPWEGWSDPQGFVDMFERVDQALNLLEAGLPL*
Ga0163162_102265891	3300013306	Switchgrass Rhizosphere	IMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL*
Ga0163162_116177202	3300013306	Switchgrass Rhizosphere	VRTLAGAIIGVIMSITMPWEGWSDGQAFVDMFERVDQALNLLEAGLPL*
Ga0137403_111826401	3300015264	Vadose Zone Soil	ADDLAVRTLAGAIIGVIMSITMPWEGWSDPAAFVDMFERVDQALNLLEAGLPL*
Ga0132255_1043445242	3300015374	Arabidopsis Rhizosphere	GAIIGVIMSITMPWEGWSDPQAFVDMFERIDQALNLLEAGLPL*
Ga0182033_108392572	3300016319	Soil	VRVMAGAIIGVIMSTTIPWEGWSDRQTMEDTFGRIEQGLALLEAGLPL
Ga0182037_109061323	3300016404	Soil	GVMMSLTMPWEGWSSDWQTFEDLFQHVDQALALLEAGLPL
Ga0187818_103041071	3300017823	Freshwater Sediment	AIIGVIMSITMPWDGWSDRQTIGDTFERIDAALALLEAGLPL
Ga0187807_10291694	3300017926	Freshwater Sediment	AVRTAAGAIIGVIMAITMPWEGWSEGGVFEDSFRQIDEALALLEAGLPL
Ga0187816_100507721	3300017995	Freshwater Sediment	RPADDLAVRTAAGAIIGVIMAITLPWEGWSEGTAFEDAFGGIDEALALLEAGLPL
Ga0187863_104343051	3300018034	Peatland	GAIVGVIMSITLPWDGWSDPQTMGVTFARIDTALGLLEAGLPL
Ga0187859_107656201	3300018047	Peatland	GRPADDLAVRTITGAIIGVIMSITLPWEGWSDRQNVEDMFVRIDRALTLLEAGLPL
Ga0187772_106002261	3300018085	Tropical Peatland	MAITIPWEGWSDGVRFEDTFGRIDEALALLEAGLPL
Ga0210403_103083004	3300020580	Soil	GVIMSIAMPWEGWSSDRQAIVDMFERIDQALNLLEAGLPL
Ga0210403_106287581	3300020580	Soil	DLAVRTVAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL
Ga0210396_102466674	3300021180	Soil	GAVVGVIMSITIPWEGWSDRTSFEDTFARIDQALALLEAGLPL
Ga0210396_115981002	3300021180	Soil	IMSITIPWEGWSDRTSFEDTFVRIDQALALLEAGLPL
Ga0210393_111735662	3300021401	Soil	VIMAITLPWEGWSDQTSFEDTFNRIDEALALLEAGLPL
Ga0210387_102714411	3300021405	Soil	VIMSITIPWEGWSDRTSFEDTFARIDQALALLEAGLPL
Ga0247676_10067471	3300024249	Soil	MSITMPWEGWSDPQAFVDLFERVDQALNLLEAGLPL
Ga0247660_10165481	3300024317	Soil	IGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL
Ga0207416_11976021	3300025134	Iron-Sulfur Acid Spring	VRTVAGAIIGVVMSITIPWENWSDGTSFEDTFARIDEALALLEAGLPL
Ga0207692_101292911	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LAVRTLAGAVIGVIMSITMPWEGWSDPQAFVYMFERVDQALNLLEAGLPL
Ga0207647_103013412	3300025904	Corn Rhizosphere	DDLAVRTLAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL
Ga0207693_103315311	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	PADDLAVRTLAGAIIGVIMSITMPWEGWSDPQGFVDMFERVDQALNLLEAGLPL
Ga0207693_108590243	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	PADDLAVRTLAGAIIGVIMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL
Ga0207652_101470481	3300025921	Corn Rhizosphere	IMSITMPWEGWSDPQAFVDMFERVDQALNLLEAGLPL
Ga0207689_114176911	3300025942	Miscanthus Rhizosphere	LAGAIIGVIMSITMPWEGWSDGQAFVDMFERVDQALNLLEAGLPL
Ga0209055_10446292	3300026309	Soil	MSITMPWEGWSDPQAFVYMFERVDQALNLLEAGLPL
Ga0208730_10098421	3300027047	Forest Soil	QYTVIAIIGVIMAITIPWEGWSDRARFEDTFTRIDQALALLEAGLPL
Ga0207762_10379311	3300027063	Tropical Forest Soil	RPPEDLAVRVMAGAIIGVIMSLTIPWEGWSDRQTLEDTFGRIEQGLALLEAGLPL
Ga0209656_100421524	3300027812	Bog Forest Soil	MGDAVVGVIMSVTMPWEGWTERTSVEDTFGRIDEALGLLEAGLPL
Ga0209590_100977275	3300027882	Vadose Zone Soil	MSITMPWEGWSSDRQTIEDTFQRIDQALALLEAGLPL
Ga0209380_106525012	3300027889	Soil	AIIGVIMAITLPWEGWSDQTSFEDTFNRIDEALALLEAGLPL
Ga0302218_101540451	3300028863	Palsa	VGVIMSITLPWDGWSDPQNMAETFGRIDTALGLLEAGLPL
Ga0311352_109875722	3300029944	Palsa	LTVRTIAGAIIGVVMSITLPWDGWSDRQTIEETFGRIDTALGLLEAGLPL
Ga0302181_103990881	3300030056	Palsa	RTTAGAIIGVIISITMPWEGEGWSDAKNIEETFRTIDQALAVLEAGLPI
Ga0302176_103749541	3300030057	Palsa	IMSITLPWDGWSDPQNMAETFGRIDAALGLLEAGLPL
Ga0311353_105337461	3300030399	Palsa	AIIGVIMSITLPWDGWSDPQNIKETFGRIDTALGLLEAGLPL
Ga0311357_118182561	3300030524	Palsa	TVRTIAGAIIGVIMSITMPWDGWSDRQNIEDTFGRIDTALGVLEAGLPL
Ga0302311_104012231	3300030739	Palsa	VMSITMPWDGWSEGHGFEDAFGRIDEALALLEAGLPL
Ga0265461_102467632	3300030743	Soil	AGAVIGVIMAITIPWEGWSDRTRFEDTFARIDQALALLEAGLPL
Ga0302326_109124011	3300031525	Palsa	VIMSITLPWDGWSDPQNMAETFGRIDAALGLLEAGLPL
Ga0318571_104536881	3300031549	Soil	SITMPWEGWSSDRQTIVDMFERIDQALSLLEDGLPL
Ga0318573_104152582	3300031564	Soil	VGAIMSITMPWEGWSDQQTLEGTFQRIEQGLALLEAGLPL
Ga0318574_100247961	3300031680	Soil	MAGAIIGVIMSTTIPWEGWSDRQTMEDTFGRIEQGLALLEAGLPL
Ga0318496_105492591	3300031713	Soil	VIMSVTMPWEGWSEGTSFEDTFGRIDEALGLLEAGLPL
Ga0318493_108119432	3300031723	Soil	IMSITMPWEGWSSDRQTIVDMFERINQALGLLEDGLPL
Ga0318502_107393471	3300031747	Soil	IGVIMSVTMPWEGWSEGHAFEHSFERIDEALGLLEAGLPL
Ga0307477_101949362	3300031753	Hardwood Forest Soil	MSITIPWEGWSDRTRFEDTFVRIDQALALLEAGLPL
Ga0307475_105724532	3300031754	Hardwood Forest Soil	MSITIPWEGWSDRTRFEDTFVRIDQALALLEACLPL
Ga0318535_105017962	3300031764	Soil	SITMPWAGWSSDRQIIMDMFERIDQALALLEAGLPL
Ga0318554_100721251	3300031765	Soil	SITMPWEGWSSDRQTIVDMFERINQALGLLEDGLPL
Ga0318497_104554112	3300031805	Soil	GVIMSITMPWEGWSSDRQTIVDMFERINQALGLLEDGLPL
Ga0318497_105449142	3300031805	Soil	SITMPWEGWSDQQTLEGTFQRIEQGLALLEAGLPL
Ga0318567_104004543	3300031821	Soil	VIMSVTLPWSDWTSESATDDMFARIDEALALLESGLPL
Ga0318564_101367103	3300031831	Soil	LVVRVMAGAIIGVIMSTTMPWEGWSDRQTMEDTFGRIEQGLALLEAGLPL
Ga0310917_109969802	3300031833	Soil	AIIGVIMSVTMPWEGWSEGHAFEHSFERIDEALGLLEAGLPL
Ga0318551_101909521	3300031896	Soil	GVIMSVTMPWEGWSEGTSFEETFGRIDEALGLLEAGLPL
Ga0308174_118190051	3300031939	Soil	GVMMSITMPWHGWSSDMQTIEDVFGRIDQALALLEAGLPL
Ga0310916_110721272	3300031942	Soil	IMSTTIPWEGWSDRQTMEDTFGRIEQGLALLEAGLPL
Ga0306926_117392791	3300031954	Soil	SLTMPWEGWSSHLQTFEDVFQQIDQALALLEAGLPL
Ga0306926_128899191	3300031954	Soil	GAIIGVIMSITMPWEGWSSDRQTIVDMFERINQALGLLEDGLPL
Ga0318563_102803631	3300032009	Soil	IMSITMPWEGWSSDRQTVEDMFERIDQALALLEAGLPL
Ga0318563_105151902	3300032009	Soil	IGVIMSITMPWEGWSSDRQTIVDMFERINQALGLLEDGLPL
Ga0318514_107000982	3300032066	Soil	GVIMSITMPWEGWSSDRQIVDMFARIDEALALLEAGLPL
Ga0335085_108081592	3300032770	Soil	VRTVAGAIIGVIMSITMPWEGWSSDRQVIVDMFERIDQALGLLEDGLPL
Ga0335085_120691612	3300032770	Soil	MSITMPWEGWSSDRRTLEDMFGRIEQALALLEAGLPL
Ga0335073_114077791	3300033134	Soil	ITMPWEGWSSDRQAIVDMFERIDQALNLLEAGLPL
Ga0318519_101565963	3300033290	Soil	ADDLAVRTVAGAIIGVIMSITMPWEGWSSDRQTIVDMFERIDQALSLLEDGLPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087786

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences