NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087755

Metagenome Family F087755

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087755
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 42 residues
Representative Sequence IRITSGKFGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Number of Associated Samples 93
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.18 %
% of genes from short scaffolds (< 2000 bps) 90.00 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (86.364 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(39.091 % of family members)
Environment Ontology (ENVO) Unclassified
(85.455 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(79.091 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.
1DelMOSum2010_102570252
2JGI24006J15134_100431615
3JGI24003J15210_101632471
4JGI24004J15324_1000492414
5JGI24004J15324_100897501
6Ga0070728_105150601
7Ga0070723_106336372
8Ga0075441_101840281
9Ga0098048_10780741
10Ga0098044_12524782
11Ga0098044_13071531
12Ga0098044_13990772
13Ga0098055_13411332
14Ga0098060_11674552
15Ga0098051_10733133
16Ga0098034_10118061
17Ga0098034_10798761
18Ga0098034_12276502
19Ga0098041_11186131
20Ga0070753_12563851
21Ga0098052_10881511
22Ga0098052_11909071
23Ga0114910_12155432
24Ga0114916_11298911
25Ga0115371_104017801
26Ga0115371_107342913
27Ga0115371_110919812
28Ga0102813_11367252
29Ga0102826_10435171
30Ga0102815_102719553
31Ga0102884_10729932
32Ga0114903_10670571
33Ga0114909_11679882
34Ga0114994_101722851
35Ga0114994_107223641
36Ga0115564_105444281
37Ga0114900_11627431
38Ga0114911_10576991
39Ga0114911_11126161
40Ga0114901_12072011
41Ga0115001_105110931
42Ga0098049_10031301
43Ga0098056_11422531
44Ga0098061_12315341
45Ga0118733_1065011462
46Ga0133547_112095041
47Ga0114922_106096541
48Ga0181367_10404611
49Ga0181377_10696241
50Ga0181388_11377892
51Ga0181398_10813611
52Ga0181426_10292331
53Ga0181399_11774911
54Ga0181397_11592972
55Ga0181389_11727292
56Ga0181405_10815443
57Ga0187219_10923841
58Ga0181382_11247772
59Ga0181420_10861091
60Ga0181413_10624691
61Ga0181413_11542062
62Ga0181413_11836092
63Ga0181430_10137607
64Ga0181386_11414712
65Ga0181423_11435641
66Ga0181424_102303851
67Ga0206124_101713381
68Ga0206685_102198232
69Ga0196889_10674222
70Ga0196887_10576973
71Ga0224503_101526741
72Ga0224513_101567221
73Ga0233412_103709101
74Ga0255050_101530991
75Ga0255044_104937602
76Ga0208668_10286481
77Ga0208791_10721202
78Ga0208010_10368451
79Ga0208793_11577362
80Ga0208553_11137322
81Ga0208158_10259035
82Ga0208158_10759552
83Ga0209348_10700591
84Ga0209128_101458611
85Ga0209128_10200121
86Ga0209128_11318761
87Ga0209232_10509064
88Ga0209336_101314951
89Ga0209337_10825825
90Ga0209337_11489843
91Ga0209337_11625473
92Ga0208031_10489921
93Ga0208180_11055382
94Ga0208181_10629251
95Ga0209335_102358592
96Ga0209815_12428292
97Ga0209379_100141669
98Ga0209091_103258491
99Ga0233415_100141978
100Ga0233413_100870933
101Ga0308025_12946921
102Ga0307999_11478102
103Ga0308009_103486071
104Ga0308005_100364434
105Ga0307984_12072832
106Ga0307375_103298981
107Ga0308011_102564492
108Ga0307998_10313137
109Ga0315326_102779553
110Ga0315321_107433162
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.29%    β-sheet: 11.76%    Coil/Unstructured: 52.94%
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510152025303540IRITSGKFGTDVKVSYKDFYNQLELCKLALQNYQHEIEVISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
13.6%86.4%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Deep Ocean
Deep Subsurface
Seawater
Marine Sediment
Aqueous
Seawater
Estuarine
Marine
Marine
Pelagic Marine
Seawater
Pelagic Marine
Marine
Seawater
Sediment
Sediment
Soil
39.1%10.0%3.6%3.6%3.6%6.4%16.4%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1025702523300000101MarineGTDVKVSYRDFYNQLENVKLALQNFKYEIEIITL*
JGI24006J15134_1004316153300001450MarineQTIIRITSGKVEADIKVSYKDFYNQLELCKLALQDCKYNLEII*
JGI24003J15210_1016324713300001460MarineVGTDIKLSYRDFYNQLENVKIALQNYKYETEIITL*
JGI24004J15324_10004924143300001472MarineIRIVSGKFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI*
JGI24004J15324_1008975013300001472MarineVKTGKLETNVKVSYRDFYNQLENIKLALQDYKYTIKVT*
Ga0070728_1051506013300005588Marine SedimentSGKFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0070723_1063363723300005612Marine SedimentRIISGKFGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0075441_1018402813300006164MarineTIRIQSGKVGTDVKVSYRNFYNQLENVKLALQNFKYEIEIITL*
Ga0098048_107807413300006752MarineQTTIRIIAGKFGTDIKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0098044_125247823300006754MarineIHDSSKHQTTIRIVSGKFGKDVKVSYKDFYSQLELCKLALQNYQHEIEVI*
Ga0098044_130715313300006754MarineTLRISSGKVEADVKVSYKDFYDQLEKCKFAMTDCKYNLEII*
Ga0098044_139907723300006754MarineHQTTIRISTGKLKIAGNVSYKDVYNQLELCKLALQNYQHEIEVI*
Ga0098055_134113323300006793MarineIIDSLNHQTTIRVTTGRFTVAVNVSYKDFYNQLENVKLALQDYQFEIEIV*
Ga0098060_116745523300006921MarineSGRIEYDVKVSYRDFYDQLEKCKFALTDCNYNLEII*
Ga0098051_107331333300006924MarineSGNVGVDIKVSYKDFYNQLELCKLALRDCNYNLEIL*
Ga0098034_101180613300006927MarineSTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0098034_107987613300006927MarineTTIRISTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0098034_122765023300006927MarineRISTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0098041_111861313300006928MarineLSGKFGTDIKVSYRDFYNQLELCKLALQNYQHEIEVI*
Ga0070753_125638513300007346AqueousIFDSDKHQTTIRISCGKFGTDVKVSYREFYNKFELCKLALENYKYEIEVI*
Ga0098052_108815113300008050MarineNSSNHQTTIRITSGKFGTDIKVSYREFYNQLEICKLALQNYIHEIEVI*
Ga0098052_119090713300008050MarineTIRISTGKLGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0114910_121554323300008220Deep OceanIVSGKFGKDVKVSYKDFYNQLKLCKLALQNYQHEIEVI*
Ga0114916_112989113300008221Deep OceanSEKEQVIIRIKSGKVGTDIKVSYRNFYNQLENVKIALQNFKYDIEIITL*
Ga0115371_1040178013300008470SedimentSGKVGTDVKVSYRNFYNQLENVKLALQNFKYEIEIINL*
Ga0115371_1073429133300008470SedimentQVIIRIKSGKVGTDVKVSYRNFYNQLENVKLALQNFKYEIEIITL*
Ga0115371_1109198123300008470SedimentIQSGKVGTDVKVSYRNFYNQLENVKLALQNFKYEIEIINL*
Ga0102813_113672523300009003EstuarineKFGVDLKVSYREFYNKFELCKLALQNYKYEIEVI*
Ga0102826_104351713300009054EstuarineIHDSRTHQTTIRITSGKFGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0102815_1027195533300009080EstuarineDSRTHQTTIRITSGKFGTDIKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0102884_107299323300009141EstuarineSDKHQTTIRISCGKFGADIKVSYREFYNKFELCKLALQNYQHEIEVI*
Ga0114903_106705713300009412Deep OceanTIRIVSGKFGKDVKVSYKDFYNQLELCKSALQNYQHEIEVI*
Ga0114909_116798823300009414Deep OceanIRVKSGKVEADVKVSYKDFYDQLEKCKFAMTDCNYNLEII*
Ga0114994_1017228513300009420MarineTTIRISTGRFKIAVNVSYKDFYNQLELCKLALQNYQYEIEVI*
Ga0114994_1072236413300009420MarineQTTIRISTGRFKIAVNVSYKDFYNQLELCKLALQNYQYEIEII*
Ga0115564_1054442813300009505Pelagic MarineVSGKFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0114900_116274313300009602Deep OceanSSKHQTTIRIVSGKFGKDVKVSYKDFYKQLKLCKLALQNYQHEIEVI*
Ga0114911_105769913300009603Deep OceanNSDKHQTTIRISCGKFGTDIKVSYREFYNKFELCKLALQNYQHEIEVI*
Ga0114911_111261613300009603Deep OceanNSDKHQTTIRISCGKFGTDIKVSYREFYNKFELCKLALQNYKYEIEVI*
Ga0114901_120720113300009604Deep OceanSSKHQTTIRIVSGKFGKDVKVSYKDFYNQLKLCKLALQNYQHEIEVI*
Ga0115001_1051109313300009785MarineEVGTDVKVSFRDFYNQLENVKLALQNFKYEIEIITL*
Ga0098049_100313013300010149MarineIKITSGNVGVDIKVSYKDFYNQLELCKLALRDCNYNLEIL*
Ga0098056_114225313300010150MarineRFTVAVNVSYKDFYNQLENVKLALQDYQFEIEIV*
Ga0098061_123153413300010151MarineGGFGTDIKVSYRNFYNQLELCKLALQDYQFEIEIV*
Ga0118733_10650114623300010430Marine SedimentLKHQTTIRISTGKFMIAVNVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0133547_1120950413300010883MarineGRFKIAVNVSYKDFYNQLELCKLALQNYQYEIEVI*
Ga0114922_1060965413300011118Deep SubsurfaceQTTIRIVSGQFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI*
Ga0181367_104046113300017703MarineKNGIHDSSKHQTTIRISTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181377_106962413300017706MarineNGIHDSSKHQTTIRISTGKLGTDVKVSYKDCYNQLELCKLALQNYQHEIEVI
Ga0181388_113778923300017724SeawaterGKFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181398_108136113300017725SeawaterHDSRTHQTTIRITSGKFGTDIKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181426_102923313300017733SeawaterIVSGKFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181399_117749113300017742SeawaterTTIRIVSGKFGTDIKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181397_115929723300017744SeawaterKHQTTIRISTGKFKIAINVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181389_117272923300017746SeawaterDKHQTTIRIVSGKFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181405_108154433300017750SeawaterIRIVSDKFGTDIKVSYRDFYNQLELCKLALQNYQHEIEVI
Ga0187219_109238413300017751SeawaterSKKHQTTIRISCGKFNTDVKVSYREFYNKFELCKLALQNYKYEIEVI
Ga0181382_112477723300017756SeawaterITSGKVETDVKVSYKDFYKQLENCKLALVDCNYNLEII
Ga0181420_108610913300017757SeawaterIHDSSKHQTTIRIVSGKFGKDVKVSYKDFYNQLKLCKLALQNYQHEIEVI
Ga0181413_106246913300017765SeawaterTTIRIVSGKFGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181413_115420623300017765SeawaterFDSHKHQTTIRISCGKFRTDIKVSYREFDNKFELCKLALQNYKYEIEVI
Ga0181413_118360923300017765SeawaterRISCGKFRTDIKVSYREFDNKFELCKLALKNYKYEIEVI
Ga0181430_101376073300017772SeawaterHDSRTHQTTIRITSGKFGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0181386_114147123300017773SeawaterRIVSGKFGKDVKVSYKEFYNQLKLCKLALQNYQHEIEVI
Ga0181423_114356413300017781SeawaterGKFGVDLKVSYREFYNKFELCKLALQNYKYEIEVI
Ga0181424_1023038513300017786SeawaterQTTIRISCGKFGANIKVSYREFYNKFELCKLALQNYKYEIEVI
Ga0206124_1017133813300020175SeawaterISCGKFGTDVKVSYREFYNKFELCKFALQNYKYEIEVI
Ga0206685_1021982323300021442SeawaterTSGRSKVDIKVSYKDFYHQLELCKFALTDCNYNLEII
Ga0196889_106742223300022072AqueousKRYLKDNDIYDSKKHQTTIRISCGKFGVDIKVSYREFYNKFELCKLALQNYKYEIEVI
Ga0196887_105769733300022178AqueousSVKHQVTIRIKSGDVGTDIKVSYRDFYNQLENVKLALQNFKYEIEIITL
Ga0224503_1015267413300022201SedimentSCGKFGVDLKVSYREFYNKFELCKLALQNYKYEIEVI
Ga0224513_1015672213300022220SedimentHDSSKHQTTIRISTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI
(restricted) Ga0233412_1037091013300023210SeawaterIRITSGKFGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI
(restricted) Ga0255050_1015309913300024052SeawaterISCGKFGADVKVSYREFYNKFELCKLALQNYKYEIEVI
(restricted) Ga0255044_1049376023300024529SeawaterNDVVHSSKHQVTIRIQSGKVGTDIKVSFRNFYNQLENIKLALQNFKYDIEIITL
Ga0208668_102864813300025078MarineSTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0208791_107212023300025083MarineTIKITSGNVGVDIKVSYKDFYNQLELCKLALRDCNYNLEIL
Ga0208010_103684513300025097MarineISTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0208793_115773623300025108MarineSTGKLGTDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0208553_111373223300025109MarineQTTIRISTGKFKIAVNVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0208158_102590353300025110MarineGNVGVDIKVSYKDFYNQLELCKLALRDCNYNLEIL
Ga0208158_107595523300025110MarineSGKFGTDIKVSYRDFYNQLELCKLALQNYQHEIEVI
Ga0209348_107005913300025127MarineAKHQTTIRITSGKLRKDIKVSYRDFYNQLELCKLALQNYIHEIKVI
Ga0209128_1014586113300025131MarineTTIRVTSGGFGTDIKVSYRNFYNQLELCKLALQDYQFEIEIV
Ga0209128_102001213300025131MarineRVTSGGFGTDIKVSYRNFYNQLELCKLALQDYQFEIEIV
Ga0209128_113187613300025131MarineTTIRIVSGKFGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0209232_105090643300025132MarineTTIRITSGKLRKDIKVSYRDFYNQLELCKLALQNYIHEIKVI
Ga0209336_1013149513300025137MarineSGKVGTDIKLSYRDFYNQLENVKIALQNYKYETEIITL
Ga0209337_108258253300025168MarineKSGKVGTDIKVSYRNFYNQLENVKLALQNFKYEIEIITL
Ga0209337_114898433300025168MarineTIRIVSGKFGTDIKVSYKDFYNQLELCKLVLQNYQHEIEVI
Ga0209337_116254733300025168MarineGKVEADIKVSYKDFYEQLEKCKFALTDCNYNLEIIND
Ga0208031_104899213300025237Deep OceanSIRIQSGEVGTDIKVSFRDFYNQLENVKLALQNFKYEIEIITL
Ga0208180_110553823300025277Deep OceanQTTIRIVSGKFGKDVKVSYKDFYKQLKLCKLALQNYQHEIEVI
Ga0208181_106292513300025300Deep OceanTIRIVSGKFGKDVKVSYKDFYKQLKLCKLALQNYQHEIEVI
Ga0209335_1023585923300025894Pelagic MarineIFDSDKHQTTIRISCGKFGTDVKVSYREFYNKFELCKFALQNYKYEIEVI
Ga0209815_124282923300027714MarineLKDYLRKNDVVNSEKHQVTIRIQSGKVGTDIKVSYRNFYNQLENIKLALQNFKYDIEIIT
Ga0209379_1001416693300027758Marine SedimentHQVSIRIQSGDVGTDVKVSYRDFYNQLENVKLALQNFKYEIEVITL
Ga0209091_1032584913300027801MarineQTSIRIKSGKVGTDVKVSYRDFYNQLELCKLALQDYKFEIEII
(restricted) Ga0233415_1001419783300027861SeawaterTIRIVSGKFGTDIKVSYKDFYNQLELCKLALQNYQHEIEVI
(restricted) Ga0233413_1008709333300027996SeawaterGKYGKDVKVSYKDFYNQLELCKLALQNYQHEIEVI
Ga0308025_129469213300031143MarineQSGEVGTDIKVSYRDFYNQLENVKLALQNFKYEIEIINL
Ga0307999_114781023300031608MarineVFNSEKEQVIIRIKSGKVGTDVKVSYRNFYNQLENVKLALQNFKYDIEIITL
Ga0308009_1034860713300031612MarineDYLRKNDVVNSEKKQVIIRIKSGKVGTDIKVSYRNFYNQLENIKLALQNFKYEVEIITL
Ga0308005_1003644343300031656MarineVIIRIKSGKVGTDIKVSYRNFYNQLENIKLALQNFKYEVEIITL
Ga0307984_120728323300031658MarineRIVAEVKLSYKDFYNQLEMIKLALENFQYETEIITL
Ga0307375_1032989813300031669SoilNHQTIIRITSGKVGTDVKVSYKDFYNQLENCKLALQNCNYNLEII
Ga0308011_1025644923300031688MarineSEKHQVIIRIQSGKVGTDVKVSYRNFYNQLENVKLALQNFKYDIEIITL
Ga0307998_103131373300031702MarineVSIRIQSGEVGTDIKVSYRDFYNQLENVKLALQNFKYEIEIINL
Ga0315326_1027795533300031775SeawaterSGRVEYDVKVSYKDFYNQLEKCKFAMTDCNYNLEII
Ga0315321_1074331623300032088SeawaterDSEKHQTTIRISCGKFGVDIKVSYREFYNKFELCKLALQNYKYEIEVI


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