Basic Information | |
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Family ID | F087726 |
Family Type | Metagenome |
Number of Sequences | 110 |
Average Sequence Length | 44 residues |
Representative Sequence | MPRAVIVLLVLVLVLVGLMFFFSSQADEVPTNTIEVEVNAPANAN |
Number of Associated Samples | 70 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 71.82 % |
% of genes near scaffold ends (potentially truncated) | 34.55 % |
% of genes from short scaffolds (< 2000 bps) | 86.36 % |
Associated GOLD sequencing projects | 63 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.45 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (91.818 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (33.636 % of family members) |
Environment Ontology (ENVO) | Unclassified (59.091 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Unclassified (40.909 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | Yes | Secondary Structure distribution: | α-helix: 32.88% β-sheet: 0.00% Coil/Unstructured: 67.12% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.45 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Hot Spring Sediment Groundwater Sediment Soil Serpentine Soil Ore Pile And Mine Drainage Contaminated Soil Termite Nest Soil Agricultural Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Arabidopsis Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
GPKNP_03772450 | 2070309009 | Soil | MPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEV |
JGI24749J21850_10841902 | 3300002076 | Corn, Switchgrass And Miscanthus Rhizosphere | MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVN |
P12013IDBA_10032973 | 3300003312 | Ore Pile And Mine Drainage Contaminated Soil | MPRAILVLVVLVLAVLALLWFLSRSAGEVPTRTIEVGVNAPADAR* |
P12013IDBA_10125863 | 3300003312 | Ore Pile And Mine Drainage Contaminated Soil | MPRAAILIFFVLLVVLGLLWFLSSQAEEVPTRTIEVEVNAPANAG* |
P12013IDBA_10222642 | 3300003312 | Ore Pile And Mine Drainage Contaminated Soil | MPRAILILLLLVLAVAGLLWFLSGSAREVPTRTIEAEVDAPADAR* |
Ga0062593_1017558772 | 3300004114 | Soil | MPRAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS* |
Ga0062589_1018436111 | 3300004156 | Soil | MPRAVILLILVVLVLLGLLFFFSHHASEQPTRTMEAEVNQPANAQ* |
Ga0062595_1000113662 | 3300004479 | Soil | MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS* |
Ga0062594_1006505192 | 3300005093 | Soil | MPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS* |
Ga0070676_113117651 | 3300005328 | Miscanthus Rhizosphere | MPRAVILLIVVLLLVVGLLFFFSSRANEVPTRAIEVEVNAPANAS* |
Ga0070677_101205813 | 3300005333 | Miscanthus Rhizosphere | MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPAN |
Ga0070669_1001136762 | 3300005353 | Switchgrass Rhizosphere | MPRAVIVLLVLVLLVVGLMFFFSSRAGEQPTKTIEVEVNQPANAS* |
Ga0070669_1001972681 | 3300005353 | Switchgrass Rhizosphere | TMPRAVILLIVVLLLVVGLLFFFSSRANEVPTRAIEVEVNAPANAS* |
Ga0070675_1007429621 | 3300005354 | Miscanthus Rhizosphere | VPIPKDASAMPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS* |
Ga0070671_1002538863 | 3300005355 | Switchgrass Rhizosphere | MPRAVILLILVVLVLLGLMFFFSHHAGEKPTRTIEVEVNQPANAQ* |
Ga0070662_1007625832 | 3300005457 | Corn Rhizosphere | MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ* |
Ga0070665_1025616051 | 3300005548 | Switchgrass Rhizosphere | MPRAIIVLLLIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN* |
Ga0068861_1020645961 | 3300005719 | Switchgrass Rhizosphere | RAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS* |
Ga0081539_100791552 | 3300005985 | Tabebuia Heterophylla Rhizosphere | MPRAVLVLIALLVLVAALLAFLSTRAREVPTNTIEVEVNAPANAR* |
Ga0082029_11898681 | 3300006169 | Termite Nest | MPRAVIVLLLLVLVIAGLMWFFSSQADEVPTNRIEVEVNAPANAS* |
Ga0082029_14195039 | 3300006169 | Termite Nest | MPRAVIVLLVLFVLIVGLLWFFSSRATDVPAHTIEVEVNAPANAR* |
Ga0073934_102793942 | 3300006865 | Hot Spring Sediment | MPRAVIFLLVLVLLVVGLMFFFSSQADEVPTNTIEVEVNAPANAN* |
Ga0079218_109769102 | 3300007004 | Agricultural Soil | MPRAVIVLLVLVLLIVGLMFFFSSRAVEVQPSTIEVEVNAPANAN* |
Ga0111539_130309082 | 3300009094 | Populus Rhizosphere | MPRAVILLILVVIVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ* |
Ga0126307_104245142 | 3300009789 | Serpentine Soil | LVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN* |
Ga0126307_104732891 | 3300009789 | Serpentine Soil | MPRAVIVLLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN* |
Ga0126311_105659573 | 3300010045 | Serpentine Soil | MPRALIVLLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN* |
Ga0157292_103412962 | 3300012900 | Soil | VLVLLGLLFFFSHHASEQPTRTMEAEVNQPANAQ* |
Ga0164241_108290952 | 3300012943 | Soil | MPRAVILLILVVLVLVGLMFFFSRQADEVPTRTIEVEVNQPANAQ* |
Ga0164300_110106281 | 3300012951 | Soil | QTRVKMPRAVIVLLVLVLLVAGLMFFFSSRAGEVPTKTIETEVTAPANAS* |
Ga0132258_100549999 | 3300015371 | Arabidopsis Rhizosphere | MPRAIILLIVVLLLFVGLLFFFSSRANEVPTRAIEVEVNAPANAS* |
Ga0132258_101048775 | 3300015371 | Arabidopsis Rhizosphere | MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPGNAS* |
Ga0132258_120193772 | 3300015371 | Arabidopsis Rhizosphere | MPRAVIILLVLVLVLVGLMFFFSSQAEEVQPSTIEVEVNAPANAN* |
Ga0132256_1004953412 | 3300015372 | Arabidopsis Rhizosphere | MPRAVILLILVVLVLLGLMFFFSHHAGEKPTRAIEVEVNQPANAQ* |
Ga0190275_130729581 | 3300018432 | Soil | MPRGFIVLLLLLLVILGLIWFFSSQADEVPTNTIEV |
Ga0190269_108604822 | 3300018465 | Soil | MPRAVIFLLVLVLLLVGLMFFFSSQADEVPTNTIEVEVNAPANAN |
Ga0190269_112651922 | 3300018465 | Soil | LVLVIAGLLWFFSSQADEVPTNTIEVKVHAPANAN |
Ga0190268_101401042 | 3300018466 | Soil | MPRGFIVLLLLLLVILGLMWFFSSQADEVPTNTIEVEVIAPANAN |
Ga0190268_101438733 | 3300018466 | Soil | MPRGFIVLILLVLVIAGLMWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0190274_121459992 | 3300018476 | Soil | MPRAVIVLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ |
Ga0190271_100045738 | 3300018481 | Soil | MPRAVIVLLVLVLLLVGLMFFFSSQADEVPTSTMEVEVNAPANAN |
Ga0190271_128647412 | 3300018481 | Soil | MPRGFIVLLLLLLVILGLMWFFSSQADEVPTNMIEVEVNAPANAN |
Ga0190264_103111521 | 3300019377 | Soil | MPRGFIVLILLVLVIAGLLWFLSSQADEVPTNTIEVEV |
Ga0196964_103914952 | 3300020202 | Soil | MPRAVLFLTLLLILIVGLLWFFSSQAEEVPTRTIEIEVNSSANAS |
Ga0222622_108303502 | 3300022756 | Groundwater Sediment | MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ |
Ga0207680_110513112 | 3300025903 | Switchgrass Rhizosphere | MPRAVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS |
Ga0207645_106323112 | 3300025907 | Miscanthus Rhizosphere | MPRAVILLIVVLLLVVGLLFFFSSRANEVPTRAIEVEVNAPANAS |
Ga0207645_110154821 | 3300025907 | Miscanthus Rhizosphere | AVVFLILILLVIVGLMFFFSSRAGEVPTHSIETQVNAPANAS |
Ga0207681_101024832 | 3300025923 | Switchgrass Rhizosphere | MPRAVIVLLVLVLLVVGLMFFFSSRAGEQPTKTIEVEVNQPANAS |
Ga0207681_108969061 | 3300025923 | Switchgrass Rhizosphere | RAVIILLVLVLVLVGLMFFFSSQAEEVQPSTIEVEVNAPANAN |
Ga0207659_106586452 | 3300025926 | Miscanthus Rhizosphere | VPIPKDASAMPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS |
Ga0207701_110931632 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MLRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQPANAQ |
Ga0207644_102519062 | 3300025931 | Switchgrass Rhizosphere | MPRAVILLILVVLVLLGLMFFFSHHAGEKPTRTIEVEVNQPANAQ |
Ga0207644_110282562 | 3300025931 | Switchgrass Rhizosphere | MPRALIVLLVILLVIAGLMFFFSSRAGEVPTRTIETEVNAPANAS |
Ga0207706_111825101 | 3300025933 | Corn Rhizosphere | VLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS |
Ga0207691_109223432 | 3300025940 | Miscanthus Rhizosphere | MPRAVILLILVVLVLLGLLFFFSHHASEQPTRTMEAEVNQPANAQ |
Ga0207711_115053921 | 3300025941 | Switchgrass Rhizosphere | MPRAVIVLVVLLLLIIGLMFFFSRQAGEVPTKTIETEVTATSNAS |
Ga0207679_101806102 | 3300025945 | Corn Rhizosphere | RPKQTRVKMPRAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS |
Ga0207668_114288722 | 3300025972 | Switchgrass Rhizosphere | LLLIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0209970_10400012 | 3300027614 | Arabidopsis Thaliana Rhizosphere | MPRAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS |
Ga0209486_110743352 | 3300027886 | Agricultural Soil | MPRAVIVLLVLVLLIVGLMFFFSSRAVEVQPSTIEVEVNAPANAN |
Ga0268266_120407071 | 3300028379 | Switchgrass Rhizosphere | MPRAIIVLLLIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0247828_110998612 | 3300028587 | Soil | PVSHLPNSMRVPMPRAVIVLIVLLILIVGLLWFFSSRATDVPARTIEVEVNAPANAR |
Ga0247823_102217742 | 3300028590 | Soil | MPRAVIVLIVLLILIVGLLWFFSSRATDVPARTIEVEVNAPANAR |
Ga0247827_105158342 | 3300028889 | Soil | MPRAVIVLLVLVLLVAGLMFFFSSRAGEVPTKTIETEVTAPANAS |
Ga0310888_111108242 | 3300031538 | Soil | MPRAVIVLLVLVLLVAGLMFFFSSRAGEVPTKTIETEVTAP |
Ga0307408_1000118863 | 3300031548 | Rhizosphere | MPRAVIVLIVLLALIVGLLWFFSSRANDVPARTIEVEVNAPANAR |
Ga0307408_1001616723 | 3300031548 | Rhizosphere | MPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307408_1008147551 | 3300031548 | Rhizosphere | MPRAVIVLLVLVLILAGLMFFFSRQAGEVPTKTIETEVTAPAN |
Ga0307408_1012626792 | 3300031548 | Rhizosphere | MPRAVIVLLVLVLLLVGLMFFFSSRAGEVPTKTIETEVTAPANAS |
Ga0307408_1013902411 | 3300031548 | Rhizosphere | VLLIIVVLLIVGLLFFFSSRADEVPTRTIEVEVNAPANAS |
Ga0307408_1014913081 | 3300031548 | Rhizosphere | IVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307405_100558111 | 3300031731 | Rhizosphere | THRRRVPMPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307405_100670381 | 3300031731 | Rhizosphere | MPRGFIVLILLVLVIAGLLWFFSSQADEVPTNTIEVE |
Ga0307405_105022282 | 3300031731 | Rhizosphere | MPRAVIVLLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPANAN |
Ga0307405_107642152 | 3300031731 | Rhizosphere | MPRAVIVLLVLVLLIVGLTFFFSSRAEEVQPSTIEVEVNAPANAN |
Ga0307405_107918281 | 3300031731 | Rhizosphere | MPRAVIVLLVLVLILAGLMFFFSRQAGEVPTKTIETEVTAPANAS |
Ga0307405_113477471 | 3300031731 | Rhizosphere | VIVLLLLLLVMLGLMWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307405_114126272 | 3300031731 | Rhizosphere | MPRAIIVLLLIVMVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307405_120975061 | 3300031731 | Rhizosphere | MPRAVIVLILVILAIAGLMIFFSSRADEVPTRTIEVEVNTTANAS |
Ga0307413_101316322 | 3300031824 | Rhizosphere | MPRAVIVLLLLVLVLGGLTWFFSSQADEVPTNIVEVEVNTPANAN |
Ga0307413_101561551 | 3300031824 | Rhizosphere | RAAKARVPSANSMRVTMPRAVIVLIVLLALIVGLLWFFSSRANDVPARTIEVEVNAPANA |
Ga0307413_102653962 | 3300031824 | Rhizosphere | VIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS |
Ga0307413_107848362 | 3300031824 | Rhizosphere | MPRAVIVLLVLILVLVGLMFFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307413_110109562 | 3300031824 | Rhizosphere | MPRGFIVLILIVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307413_111341792 | 3300031824 | Rhizosphere | MSRGLTLLILLVIVIAGLLWFLAGSADEVPTRTIEVDVNAPANAN |
Ga0307413_118264152 | 3300031824 | Rhizosphere | MPRALILLILLLLVVVGLLFFFSSQAEEVPVQPIEIEVNTPADAR |
Ga0307410_100107825 | 3300031852 | Rhizosphere | MPRAVIVLIFLLILIVGLLWFFSSRATDVPARTIEVEVNAPANAR |
Ga0307410_101297173 | 3300031852 | Rhizosphere | MPRAVIVLIVLLVLIVGLLWFFSSRATDVPARTIEVEVNAPANAR |
Ga0307410_101863242 | 3300031852 | Rhizosphere | MPRAVIVLLVLVLVLVGLMFFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307410_117612562 | 3300031852 | Rhizosphere | MPRAVILLILVVLVLLGLIFFFSHNAGEEPTRTIEVEVNQPANAQ |
Ga0310904_102849143 | 3300031854 | Soil | MPRAVILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQLANAQ |
Ga0307406_107954012 | 3300031901 | Rhizosphere | MPRGFIVLLLLLLVILGLMWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0307407_105451532 | 3300031903 | Rhizosphere | MRVTMPRAVIVLIVLLVLIVGLLWFFSSRATDVPARTIEVEVNAPANAR |
Ga0307407_109206612 | 3300031903 | Rhizosphere | MPRAVIVLLVLVLLVVGLMFFFSSRAGEVSTKTIETEVTAPANAS |
Ga0307409_1001356582 | 3300031995 | Rhizosphere | MPRAVIFLIVFVLLVVGLLWFLSGRASEVPTNTIEVEVNAPANAR |
Ga0307409_1006292301 | 3300031995 | Rhizosphere | LVLALGGLTWFFSSQADEVPTNIVEVEVNTPANAN |
Ga0307409_1017331881 | 3300031995 | Rhizosphere | LIIVVLLIVGLLFFFSSRADEVPTRTIEVEVNAPANAS |
Ga0310903_105936082 | 3300032000 | Soil | RAVIVLLVLVLLVVGLMFFFSSRAGEVPTKTIETEVTAPANAS |
Ga0307414_113121531 | 3300032004 | Rhizosphere | MPRAVIVLLVLVLLLVGLMFFFSSRAGEVPTKTIETDVTAPANAS |
Ga0307414_114317731 | 3300032004 | Rhizosphere | QKRSHSRPKQTRVKMPRAVIVLLVLVLILAGLMFFFSRQAGEVPTKTIETEVTAPANAS |
Ga0307411_101492932 | 3300032005 | Rhizosphere | MPRAVIVLLVLVLVLVGLMFFFSSQADEVPTSTVEVEVNAPANAN |
Ga0307411_106518631 | 3300032005 | Rhizosphere | FATRVKMPRAVIVFLVLVLLIVGLMFFFSSRAEEVQPSTIEVEVNAPAHAN |
Ga0307411_112923841 | 3300032005 | Rhizosphere | FIVLILLVLVIAGLLWFFSSQADEVPTNTIEVEVNAPANAN |
Ga0310902_104278821 | 3300032012 | Soil | MPRALLVLLVILLVIAGLMFFFSSRAGEVPTRPIETEVNAPANAS |
Ga0310906_113795771 | 3300032013 | Soil | VILLILVVLVLLGLLFFFSHHAGEEPTRTIEVEVNQLANAQ |
Ga0310890_108337542 | 3300032075 | Soil | MPRALLVLLVILLVIAGLMFFFSSRAVEVPTRPIETEVNAPANAS |
Ga0307415_1007334102 | 3300032126 | Rhizosphere | RAPMPRGFIVLLLIILVIAGLLWFFSSQADEVPTNTIEVEVNAQANAN |
Ga0310889_101128732 | 3300032179 | Soil | TDASTMPRALLVLLVILLVIAGLMFFFSSRAGEVPTRPIETEVNAPANAS |
Ga0310810_106859711 | 3300033412 | Soil | MPRAVIALIVILLVIVGLFFLLSRQAGEVPTKTIEVEVNQPANAH |
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