Basic Information | |
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Family ID | F087721 |
Family Type | Metagenome |
Number of Sequences | 110 |
Average Sequence Length | 47 residues |
Representative Sequence | VLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL |
Number of Associated Samples | 81 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 34.86 % |
% of genes near scaffold ends (potentially truncated) | 20.00 % |
% of genes from short scaffolds (< 2000 bps) | 84.55 % |
Associated GOLD sequencing projects | 80 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.61 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (83.636 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (30.909 % of family members) |
Environment Ontology (ENVO) | Unclassified (27.273 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (45.455 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 47.30% β-sheet: 2.70% Coil/Unstructured: 50.00% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.61 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Polar Desert Polar Desert Sand Natural And Restored Wetlands Soil Soil Serpentine Soil Glacier Forefield Soil Ore Pile And Mine Drainage Contaminated Soil Termite Nest Soil Agricultural Soil Soil Grasslands Soil Sub-Biocrust Soil Soil Soil Natural And Restored Wetlands Soil Corn Rhizosphere Switchgrass Rhizosphere Soil Soil Plant Litter Soil Arabidopsis Rhizosphere Avena Fatua Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Avena Fatua Rhizosphere Switchgrass, Maize And Mischanthus Litter |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
4ZMR_00066720 | 2170459017 | Switchgrass, Maize And Mischanthus Litter | AGPIAYARRVLPALRDHRGKPAAPLRLLAVLVCRDAAAGAPVLVPVVRWATDLL |
C688J35102_1196795802 | 3300002568 | Soil | MLPLLRDPRGRPAVTVRLLAVAVVLGMLLLAAPVLVPVVRWATGAVF* |
C688J35102_1207524292 | 3300002568 | Soil | VLPALRDSRGKPAAPMRLLAALVVLGMVAIAAPAIVPVLRWVSETFL* |
P32013IDBA_10284042 | 3300003313 | Ore Pile And Mine Drainage Contaminated Soil | VRRPYARVVLPALRDSRGKPAAPLRLLALLVALGMLALAAPAVVPVLRWLVGAVL* |
Ga0055471_100049181 | 3300003987 | Natural And Restored Wetlands | VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGALL* |
Ga0055472_101945322 | 3300003998 | Natural And Restored Wetlands | VVLPALRDDRGKPAGPLRLLAALVALGLLMLATPVLVPLVRWTAGLF* |
Ga0062593_1001981902 | 3300004114 | Soil | VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPIMRWVSETFL* |
Ga0062593_1013064411 | 3300004114 | Soil | MLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATDLL* |
Ga0062590_1019308522 | 3300004157 | Soil | VLPALRDHRGKPAAPLRLLAVLVVLGMVLLAAPVLVPVVRWATGLL* |
Ga0062592_1000257162 | 3300004480 | Soil | MLPALRDQRGKPAAPLRLLAVLIVVGMLVLTAPVLVPMLRWATDLVR* |
Ga0062594_1017100122 | 3300005093 | Soil | VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL |
Ga0062594_1028025351 | 3300005093 | Soil | VLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL* |
Ga0070683_1002101462 | 3300005329 | Corn Rhizosphere | VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL* |
Ga0070665_1019043472 | 3300005548 | Switchgrass Rhizosphere | VLPALRDSRGKPAAPRRLLALLVVLGMLAIAAPAIVPIMRWVSETFL* |
Ga0082029_13872142 | 3300006169 | Termite Nest | VLQALRDSRGKPSTPLRVLAALVVLGMLTLAAPVLVPLLRWASDALL* |
Ga0079222_121788151 | 3300006755 | Agricultural Soil | VLPALRDSRGKPAAPLRLLAALVVLGMLAIAAPAIVPVLRWVSGTFF* |
Ga0066653_105706731 | 3300006791 | Soil | PSYARQVLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL* |
Ga0105245_118321752 | 3300009098 | Miscanthus Rhizosphere | VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPVLRWVSETFL* |
Ga0105243_112018313 | 3300009148 | Miscanthus Rhizosphere | VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPLLVPVVRWATDLL* |
Ga0105249_110544583 | 3300009553 | Switchgrass Rhizosphere | VLPALRDQRGKPAGPLRLLAVLVLMGMLLLAAPVLIPLLQWVTGAVL* |
Ga0126307_100004882 | 3300009789 | Serpentine Soil | VLPALRDHRGKPSAPLRLVAALVVLGMLTIAAPVLVPLLRWASGALL* |
Ga0126305_103197702 | 3300010036 | Serpentine Soil | VLPALRDHLGKPSAPLRLVAVLVVLGMLTIAAPVLVPLLRWASGALL* |
Ga0126309_100468122 | 3300010039 | Serpentine Soil | MLPALRDRRGKPAAPIRLLAVLVVLGMILIAAPVLVPVVRWAADTFF* |
Ga0126309_100800672 | 3300010039 | Serpentine Soil | MLPALRDQRGKPAAPLRLLAVLVVVGMLLIAAPVLVPVVRWTADFLR* |
Ga0126311_102928032 | 3300010045 | Serpentine Soil | VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGTLL* |
Ga0138513_1000349892 | 3300011000 | Soil | MLPALRDHRGKPAAPLRLLAVLVVLGMLMLAAPVLVPVVRWATGLL* |
Ga0137425_10065373 | 3300011422 | Soil | MGVLPALRDQRGKPAGPLRLLAVLVLVGMLMIAAPVLVPVLRWASSLL* |
Ga0137425_11797802 | 3300011422 | Soil | PALRDQRGKPAAPLRLLALLIVVGMLVLTAPVLVPMLRWATDLVR* |
Ga0136631_100587642 | 3300012043 | Polar Desert Sand | MLPALRDKRGKPAAPLRVLAVLVLLGLLLIAAPVLVPLLSWAADLIL* |
Ga0136631_104890721 | 3300012043 | Polar Desert Sand | IVPSYPRQVLPALRNDRGKPAAPLRLLAALVVLGMLAIAAPVAIPLVQWIVGALF* |
Ga0136625_11892712 | 3300012091 | Polar Desert Sand | VLPALRNDRGKPAAPLRLLAALVVLGMLAIAAPVAIPLVQWIVGALF* |
Ga0136632_101001233 | 3300012093 | Polar Desert Sand | SYPRQVLPALRNDRGKPAAPLRLLAALVVLGMLAIAAPVAIPLVQWIVGALF* |
Ga0136638_100936142 | 3300012094 | Polar Desert Sand | VLPALRDHNGRPAGSVRLLAALVVLGLLGLAAPAVFPLVRWFVATLS* |
Ga0136638_103353662 | 3300012094 | Polar Desert Sand | VLPALRDPRGRPAAPLRLLAFLVVVGMLMLAAPALLPVIRWVVGLF* |
Ga0150985_1004816852 | 3300012212 | Avena Fatua Rhizosphere | MLPALRDARGKPAAPLLLLTVLVVLGLIVPVAPLIIDVLRWATGLIV* |
Ga0150985_1219980212 | 3300012212 | Avena Fatua Rhizosphere | VLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL* |
Ga0150985_1227507302 | 3300012212 | Avena Fatua Rhizosphere | MLPARRDHRGKPAGPLRLLAVLVLLGMLLLAAPVLVPLLQWVTGAFL* |
Ga0150984_1049911931 | 3300012469 | Avena Fatua Rhizosphere | MLPALRDARGKPAAPLRLLAVLVVLGLIMPVAPLIIDVLRWATGLIV* |
Ga0136633_11932552 | 3300012527 | Polar Desert Sand | MLPALRDKRGQPAAPLRLLAVLVLFGLLLIAAPVLIPLLSWAADLFL* |
Ga0136633_12335852 | 3300012527 | Polar Desert Sand | APSYAVRMLPALRDKRGKPAAPLRLLAVLVLLGMLLIAAPVLLPVLSWAADLFL* |
Ga0136635_100025424 | 3300012530 | Polar Desert Sand | MLPALRDARGKPAGPLKLLAALVLLGMLALSTPVVVPLIRMAASALL* |
Ga0136635_104066852 | 3300012530 | Polar Desert Sand | MLPALRDKRGKPAAPLRVLAVLVVLGLLLIAAPVLVPLVSWAADVLL* |
Ga0136640_103292802 | 3300012531 | Polar Desert Sand | PALRDHNGRPAGSVRLLAALVVLGLLGLAAPAVFPLVRWFVATLS* |
Ga0157216_101058121 | 3300012668 | Glacier Forefield Soil | VLPALRDQRGKPAVPIRLLAALVLLGMLGLSTPVVVPLVRLAAAALF* |
Ga0136612_100335532 | 3300012680 | Polar Desert Sand | VLPALRDARGKPAGPLKLLAALVLLGMLALSTPVVVPLIRMAASALL* |
Ga0136611_102242472 | 3300012682 | Polar Desert Sand | MLPALRDNRGKPAAPLRVLAVLVLLGLLLIAAPVLVPLLSWAADLIL* |
Ga0136611_107596201 | 3300012682 | Polar Desert Sand | VLPALRDHNGRPAGSVRLLAALVVLGMLALAAPAVLPLVRWFVATLS* |
Ga0164301_101710112 | 3300012960 | Soil | DHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL* |
Ga0164306_101743071 | 3300012988 | Soil | LRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL* |
Ga0164306_111104971 | 3300012988 | Soil | VLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGL |
Ga0075312_10718931 | 3300014254 | Natural And Restored Wetlands | PRHRLAGVLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGALL* |
Ga0157380_105790662 | 3300014326 | Switchgrass Rhizosphere | VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVIVPLLRWASGALL* |
Ga0173483_102255661 | 3300015077 | Soil | PRRVLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL* |
Ga0167654_10022994 | 3300015084 | Glacier Forefield Soil | VLPALRDHRGKPAGPLRLLAVLVVLGMVLLAAPVLVPVVRWATGLL* |
Ga0167655_10563982 | 3300015086 | Glacier Forefield Soil | MLPALRDGRGQPAGPMRLLAALIVLGMLALAAPVLVPVVRWAAATLL* |
Ga0173480_111029502 | 3300015200 | Soil | RVLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL* |
Ga0132258_110523922 | 3300015371 | Arabidopsis Rhizosphere | VLPALRDSRGKPAAPLRLLAALVVLGMVAIAAPAIVPVLRWVSGTFF* |
Ga0180121_100047103 | 3300017695 | Polar Desert Sand | MLPALRDARGKPAGPLKLLAALVLLGMLALSTPVVVPLIRMAASALL |
Ga0180121_101444472 | 3300017695 | Polar Desert Sand | MLPALRDKRGKPAAPLRVLAVLVVLGLLLIAAPVLVPLVSWAADVLL |
Ga0183260_104506491 | 3300017787 | Polar Desert Sand | VLPALRDHNGRPAGSVRLLAALVVLGLLGLAAPAVFPLVRWFVAALS |
Ga0136617_100298152 | 3300017789 | Polar Desert Sand | VLPALRDPRGRPAAPLRLLAFLVVVGMLMLAAPALLPVIRWVVGLF |
Ga0136617_100383694 | 3300017789 | Polar Desert Sand | MLPALRDARGKPAAPLRLLAVLVVVGMLVLAAPVLVALLRWGADVFR |
Ga0136617_113754011 | 3300017789 | Polar Desert Sand | VLPALRDARGRPAAPLRLLAALIALGMLMLAAPALLPVVRWVLDLL |
Ga0190266_100081922 | 3300017965 | Soil | VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPVLRWVSETFL |
Ga0190266_101224422 | 3300017965 | Soil | MLPALRDQRGKPAAPLRLLALLVVVGMLVLTAPVLVPMLRWATDLVR |
Ga0190265_108416932 | 3300018422 | Soil | MLPALRDQRGKPAAPMRLLAVLVVLGMLVLAAPVLVPMLRWATDFFL |
Ga0190272_102368822 | 3300018429 | Soil | MLPALRDQRGKPAAPLRLLAVLVVVGMLVLSAPVLVPMVRWATDLLR |
Ga0190272_106850222 | 3300018429 | Soil | MDVLPALRDQRGKPAGPLRLLAVLVLVGMLMIAAPVLVPVLRWASSLL |
Ga0190272_107534332 | 3300018429 | Soil | MLPALRDHRGKPAAPLRLLAVLVVVGMLVLTAPVLIPMLRWATDLVR |
Ga0190272_115745531 | 3300018429 | Soil | VKTLDRRGKPAAPLRLLAVLVLVGMLTIAAPVLVPMLRWASSLF |
Ga0190272_118697672 | 3300018429 | Soil | MLPALRDQRGKPAAPLRLLALLIVVGMLVLTAPVLVPMLRWATDLVR |
Ga0190272_119877102 | 3300018429 | Soil | MLPALRDARGKPAAPLRLLAVLVVLGMLVIAAPVLVPVLRWASDLFL |
Ga0190275_103257002 | 3300018432 | Soil | MLPALRDQRGKPAAPLRLLAVLVVVGMLVLTAPVLIPMLRWATDLVR |
Ga0190275_104118022 | 3300018432 | Soil | MLPALRDQRGKPAAPLRLLAVLVVLGMLVLTAPVLVPMLKWATDLVR |
Ga0190275_127882391 | 3300018432 | Soil | MDVLPALRDHRGKPAGPLRLLAVLVVVGMLMIAAPVLIPVLRWASSLL |
Ga0190268_101985042 | 3300018466 | Soil | VLPALRDNRGKPSTPLRLVAALVVLGMLTLAAPVLVPLMRWASDALL |
Ga0190268_121287902 | 3300018466 | Soil | VWRPRHSLGGVLPALRDNRGKPSAPLRVLAALVVLGLLTLAAPVLVPLLRWATDALL |
Ga0190270_102905382 | 3300018469 | Soil | VLPALRDHRGKPAGPVRLFAALVLLGMLTLAAPVIVPLLRWASGVLL |
Ga0190270_104993702 | 3300018469 | Soil | MLPALRDQRGKPAAPLRLLALLIVVGMLVLTAPVLVPMLKWATDLVR |
Ga0190274_102520853 | 3300018476 | Soil | VLPALRDHRGKPSASLRLVAALVVLGMLTLAAPVLVPLLRW |
Ga0190274_116413892 | 3300018476 | Soil | VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGALL |
Ga0190271_102985082 | 3300018481 | Soil | VLPALRDHRGKPAGPVRLLAALVLLGMLALAAPVIVPLLRWASGVLL |
Ga0190271_127246292 | 3300018481 | Soil | VLPALRDHRGKPSAALRLVAALVALGLLTLAAPVLVPLLRWASEALL |
Ga0066669_113915202 | 3300018482 | Grasslands Soil | VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATALL |
Ga0193598_10480122 | 3300018910 | Soil | VLPALRDSRGKPAAPLRIVALLVALGLLALAAPAIVPVVRWLLTAVF |
Ga0190273_101060322 | 3300018920 | Soil | MLPALRDRRGKPAAPMRLLAVLVVLGMLLIAAPVLVPVLRWAGKLFL |
Ga0190264_100133244 | 3300019377 | Soil | VLPALRDHRGKPAGPLRLVAALVALGLLMLAAPVLVPLLRWASGALL |
Ga0190267_101057121 | 3300019767 | Soil | MLPALRDQRGRPAAPMRLLAVLVVLGMLVLAAPVLVPLLRWTMGLF |
Ga0190267_101646562 | 3300019767 | Soil | VLPALRDHRGKPSTPLRVLAALVVLGMLTLAAPVLVPLLRWASAALL |
Ga0193704_10847592 | 3300019867 | Soil | MLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATGLL |
Ga0196958_101550252 | 3300020181 | Soil | MLPALRDARGRPAAPLRLLAVLVVVGMLVLAAPVLVPLLRWTTDLLW |
Ga0193699_100858701 | 3300021363 | Soil | VLPALRDNRGKPAGPLRLLAVLVVLGMIMLAAPVLVPLVRWASGLI |
Ga0247779_11371522 | 3300022908 | Plant Litter | AGPVLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPIMRWVSETFL |
Ga0207688_108753052 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | VLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPIMRWVSETFL |
Ga0207662_108415923 | 3300025918 | Switchgrass Rhizosphere | PSSYARRVLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL |
Ga0207691_117274831 | 3300025940 | Miscanthus Rhizosphere | SSYARRVLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL |
Ga0207661_104009972 | 3300025944 | Corn Rhizosphere | MLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL |
Ga0207679_119454912 | 3300025945 | Corn Rhizosphere | MLPALRDHRGKPAAPLRLLAVLVVLGMLLLAAPVLVPVVRWATDLL |
Ga0207677_118850021 | 3300026023 | Miscanthus Rhizosphere | PALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWATDLL |
Ga0207698_120965152 | 3300026142 | Corn Rhizosphere | VLPALRDHRGKPAAPLRLLAVLVVVGMLLLAAPVLVPVVRWA |
Ga0208736_10575162 | 3300027618 | Polar Desert | MLPALRDKRGKPAAPLRVLAVLVLLGMLLIAAPVLVPLLSWAADVLL |
Ga0214468_10162622 | 3300027647 | Soil | VLPALRDHTGKPAAPLRLLAALVALGLLMLAAPALIPVVRWAIDLF |
Ga0307310_102259592 | 3300028824 | Soil | MLPALRDQRGKPAAPLRLLAVLVVVGMLMLAAPVLVPMVRWTADFLR |
Ga0247826_106273762 | 3300030336 | Soil | VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVIVPLLRWASGALL |
Ga0307502_100868852 | 3300031164 | Soil | MLPALRDQRGKPAAPLRLLAVLVVVGMVLIAAPVLVPIVRWTADFLR |
Ga0307408_1014585072 | 3300031548 | Rhizosphere | VLPALRDRRGKPNAPLRLLAVLVAFGMVVLAAPVLIPMLRWLSDLLGL |
Ga0307410_111660832 | 3300031852 | Rhizosphere | VLPALRDHRGKPSAPLRLVAALVVLGMLTLAAPVLVPLLRWASGTLL |
Ga0308176_100134273 | 3300031996 | Soil | VLPALRDARGKPAAPLRLLAVLIVLGLVVPVAPLVVDVLRWVAGLLV |
Ga0326721_101762862 | 3300032080 | Soil | VVVLPALRDSRGKPAAPLRLLAVLVVLGMLAIAAPAIVPVLRWVSETFL |
Ga0334963_096294_149_292 | 3300034145 | Sub-Biocrust Soil | MLPALRDPGGKPAVPIRLLAVLVVLGMILIAAPILVPVVRWATGTFF |
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