Metagenome / Metatranscriptome Family F087716

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087716
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	59 residues
Representative Sequence	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR
Number of Associated Samples	59
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.64 %
% of genes near scaffold ends (potentially truncated)	33.64 %
% of genes from short scaffolds (< 2000 bps)	95.45 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (27.273 % of family members)
Environment Ontology (ENVO)	Unclassified (30.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (48.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.64% β-sheet: 36.78% Coil/Unstructured: 50.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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SCOP family	SCOP domain	Representative PDB	TM-score
d.17.2.1: Amine oxidase N-terminal region	d1w2za2	1w2z	0.76
d.17.2.1: Amine oxidase N-terminal region	d1w2za2	1w2z	0.76
d.17.4.0: NTF2-like	d2ckfb_	2ckf	0.75
d.17.4.0: NTF2-like	d2ckfb_	2ckf	0.75
d.17.4.1: NTF2-like	d1idpa_	1idp	0.73
d.17.4.26: NTF2-like	d2cc3a1	2cc3	0.73
d.17.2.1: Amine oxidase N-terminal region	d2oqea2	2oqe	0.73
d.17.4.1: NTF2-like	d1idpa_	1idp	0.73
d.17.4.26: NTF2-like	d2cc3a1	2cc3	0.73
d.17.2.1: Amine oxidase N-terminal region	d2oqea2	2oqe	0.73

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01329	Pterin_4a	8.18
PF07311	Dodecin	3.64
PF13546	DDE_5	2.73
PF08734	GYD	2.73
PF00571	CBS	1.82
PF14235	DUF4337	1.82
PF13924	Lipocalin_5	0.91
PF13378	MR_MLE_C	0.91
PF07883	Cupin_2	0.91
PF13460	NAD_binding_10	0.91
PF00313	CSD	0.91
PF00144	Beta-lactamase	0.91
PF13006	Nterm_IS4	0.91
PF11154	DUF2934	0.91
PF00581	Rhodanese	0.91
PF09557	DUF2382	0.91
PF06210	DUF1003	0.91
PF04471	Mrr_cat	0.91
PF00072	Response_reg	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	8.18
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	3.64
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	2.73
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.91
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.91
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.82 %
Unclassified	root	N/A	38.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.82 %
Unclassified	root	N/A	38.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.82 %
Unclassified	root	N/A	38.18 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.82 %
Unclassified	root	N/A	38.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.73 %
Unclassified	root	N/A	38.18 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	38.18 %
Unclassified	root	N/A	38.18 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	36.36 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Siccirubricoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus	18.18 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1.82 %
Belnapia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
unclassified Siccirubricoccus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus	17.27 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1.82 %
Siccirubricoccus deserti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus deserti	0.91 %
Belnapia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.18 %
Siccirubricoccus sp. G192	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	17.27 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1.82 %
Siccirubricoccus deserti	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus deserti	0.91 %
Belnapia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320003\|FACENCT_FZOFKYN02G5R4O	Not Available	524	Open in IMG/M
2119805009\|FNTS007_GKN1E7E02F3BH0	Not Available	563	Open in IMG/M
2119805012\|FNTS067_GJ87FRN01CL38A	Not Available	547	Open in IMG/M
3300000750\|JGI12272J11983_1100487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	519	Open in IMG/M
3300004081\|Ga0063454_101842017	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300004803\|Ga0058862_11876337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	502	Open in IMG/M
3300005338\|Ga0068868_100476262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1090	Open in IMG/M
3300005345\|Ga0070692_10786951	Not Available	648	Open in IMG/M
3300005455\|Ga0070663_101892705	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005544\|Ga0070686_101841381	Not Available	516	Open in IMG/M
3300006021\|Ga0058700_1008519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	743	Open in IMG/M
3300006169\|Ga0082029_1598193	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300006755\|Ga0079222_11933398	Not Available	577	Open in IMG/M
3300006954\|Ga0079219_12457545	Not Available	506	Open in IMG/M
3300007004\|Ga0079218_11291557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	767	Open in IMG/M
3300007790\|Ga0105679_10036522	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1428	Open in IMG/M
3300007790\|Ga0105679_10318671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1333	Open in IMG/M
3300007790\|Ga0105679_10326754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1297	Open in IMG/M
3300009789\|Ga0126307_11168327	Not Available	623	Open in IMG/M
3300009840\|Ga0126313_10090062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2238	Open in IMG/M
3300009840\|Ga0126313_10807056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	763	Open in IMG/M
3300009840\|Ga0126313_11055833	Not Available	667	Open in IMG/M
3300010036\|Ga0126305_11064177	Not Available	556	Open in IMG/M
3300010037\|Ga0126304_11270232	Not Available	505	Open in IMG/M
3300010039\|Ga0126309_10285947	Not Available	948	Open in IMG/M
3300010039\|Ga0126309_10498214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	749	Open in IMG/M
3300010041\|Ga0126312_10863884	Not Available	658	Open in IMG/M
3300010041\|Ga0126312_11307325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	536	Open in IMG/M
3300010042\|Ga0126314_11411158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	523	Open in IMG/M
3300010044\|Ga0126310_11028591	Not Available	651	Open in IMG/M
3300010045\|Ga0126311_10416715	Not Available	1036	Open in IMG/M
3300010045\|Ga0126311_10859829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	734	Open in IMG/M
3300010045\|Ga0126311_11516694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	562	Open in IMG/M
3300010166\|Ga0126306_10851072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	738	Open in IMG/M
3300010395\|Ga0058701_10341879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	901	Open in IMG/M
3300011119\|Ga0105246_11725144	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300012212\|Ga0150985_101634721	Not Available	638	Open in IMG/M
3300012212\|Ga0150985_102635953	Not Available	676	Open in IMG/M
3300012212\|Ga0150985_106626869	Not Available	1252	Open in IMG/M
3300012212\|Ga0150985_106654900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1944	Open in IMG/M
3300012212\|Ga0150985_108158065	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300012212\|Ga0150985_116217700	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300012212\|Ga0150985_116342507	Not Available	705	Open in IMG/M
3300012212\|Ga0150985_117023940	All Organisms → cellular organisms → Bacteria → Proteobacteria	3030	Open in IMG/M
3300012212\|Ga0150985_117216517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Belnapia	510	Open in IMG/M
3300012212\|Ga0150985_119979301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1572	Open in IMG/M
3300012212\|Ga0150985_120214355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1349	Open in IMG/M
3300012212\|Ga0150985_121169971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	601	Open in IMG/M
3300012212\|Ga0150985_121304655	All Organisms → cellular organisms → Bacteria → Proteobacteria	1652	Open in IMG/M
3300012212\|Ga0150985_122556298	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300012469\|Ga0150984_103133247	All Organisms → cellular organisms → Bacteria	2828	Open in IMG/M
3300012469\|Ga0150984_104305466	Not Available	771	Open in IMG/M
3300012469\|Ga0150984_106318632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	805	Open in IMG/M
3300012469\|Ga0150984_111111007	Not Available	583	Open in IMG/M
3300012469\|Ga0150984_112444634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	860	Open in IMG/M
3300012469\|Ga0150984_116464554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	598	Open in IMG/M
3300012469\|Ga0150984_122115116	Not Available	1513	Open in IMG/M
3300012469\|Ga0150984_122678338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	715	Open in IMG/M
3300012469\|Ga0150984_123465779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1503	Open in IMG/M
3300012915\|Ga0157302_10463280	All Organisms → cellular organisms → Bacteria → Proteobacteria	539	Open in IMG/M
3300012955\|Ga0164298_10539099	Not Available	788	Open in IMG/M
3300012985\|Ga0164308_10383442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1144	Open in IMG/M
3300012988\|Ga0164306_11062938	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300013308\|Ga0157375_10763899	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300013308\|Ga0157375_12326388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	639	Open in IMG/M
3300014487\|Ga0182000_10390624	Not Available	614	Open in IMG/M
3300014487\|Ga0182000_10436565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	591	Open in IMG/M
3300014487\|Ga0182000_10438645	Not Available	590	Open in IMG/M
3300014487\|Ga0182000_10657458	Not Available	513	Open in IMG/M
3300014488\|Ga0182001_10278404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	664	Open in IMG/M
3300017965\|Ga0190266_11374719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	501	Open in IMG/M
3300018432\|Ga0190275_10165050	Not Available	2058	Open in IMG/M
3300018432\|Ga0190275_10218607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1816	Open in IMG/M
3300018432\|Ga0190275_10484555	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300018432\|Ga0190275_11085361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → Siccirubricoccus deserti	874	Open in IMG/M
3300018432\|Ga0190275_11433155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	768	Open in IMG/M
3300018432\|Ga0190275_12720164	Not Available	571	Open in IMG/M
3300018465\|Ga0190269_10947726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	642	Open in IMG/M
3300018465\|Ga0190269_11254232	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300018466\|Ga0190268_10492499	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300018466\|Ga0190268_10642585	Not Available	764	Open in IMG/M
3300018466\|Ga0190268_11389853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	600	Open in IMG/M
3300018466\|Ga0190268_11596013	Not Available	574	Open in IMG/M
3300018469\|Ga0190270_12446576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	584	Open in IMG/M
3300018892\|Ga0193607_1045878	Not Available	1348	Open in IMG/M
3300018920\|Ga0190273_10099714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1622	Open in IMG/M
3300018920\|Ga0190273_10414401	Not Available	953	Open in IMG/M
3300018984\|Ga0193605_1136247	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300019142\|Ga0193597_1206702	Not Available	562	Open in IMG/M
3300019767\|Ga0190267_10629696	Not Available	672	Open in IMG/M
3300019767\|Ga0190267_11125559	Not Available	567	Open in IMG/M
3300025901\|Ga0207688_10588557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	701	Open in IMG/M
3300025938\|Ga0207704_10925666	Not Available	734	Open in IMG/M
3300028379\|Ga0268266_11834288	Not Available	581	Open in IMG/M
3300028889\|Ga0247827_11066891	Not Available	553	Open in IMG/M
3300030988\|Ga0308183_1012215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1340	Open in IMG/M
3300031058\|Ga0308189_10076643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1003	Open in IMG/M
3300031058\|Ga0308189_10415385	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300031091\|Ga0308201_10010565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1690	Open in IMG/M
3300031091\|Ga0308201_10045299	Not Available	1077	Open in IMG/M
3300031091\|Ga0308201_10095017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	849	Open in IMG/M
3300031091\|Ga0308201_10097976	Not Available	841	Open in IMG/M
3300031091\|Ga0308201_10115319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	797	Open in IMG/M
3300031938\|Ga0308175_100442393	All Organisms → cellular organisms → Bacteria → Proteobacteria	1369	Open in IMG/M
3300034007\|Ga0334936_040084	Not Available	973	Open in IMG/M
3300034135\|Ga0334929_013324	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300034135\|Ga0334929_119020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	548	Open in IMG/M
3300034140\|Ga0334957_054064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	777	Open in IMG/M
3300034221\|Ga0334937_175820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Siccirubricoccus → unclassified Siccirubricoccus → Siccirubricoccus sp. G192	593	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.18%
Host-Associated	Host-Associated	31.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.18%
Plants	Host-Associated → Plants	30.91%
Human	Host-Associated → Human	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.73%
Phylloplane	Host-Associated → Plants → Phylloplane	1.82%
Digestive System	Host-Associated → Human → Digestive System	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	13.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.00%
Sand	Environmental → Terrestrial → Soil → Sand	9.09%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	4.55%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.82%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	13.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.00%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	9.09%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	27.27%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	14.55%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	13.64%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	8.18%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust	2.73%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.82%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320003	Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2-	Environmental	Open in IMG/M
2119805009	Soil microbial communities from sample at FACE Site NTS_007 Nevada Test Site	Environmental	Open in IMG/M
2119805012	Soil microbial communities from sample at FACE Site NTS_067 Nevada Test Site	Environmental	Open in IMG/M
3300000750	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300006021	Agave microbial communities from Guanajuato, Mexico - At.Am.e	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018892	Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, bundles v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018984	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 9 hrs after wetting v1	Environmental	Open in IMG/M
3300019142	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid late stage, 3 min after wetting v1	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300034007	Biocrust microbial communities from Mojave Desert, California, United States - 32SMC	Environmental	Open in IMG/M
3300034135	Biocrust microbial communities from Mojave Desert, California, United States - 25HNC	Environmental	Open in IMG/M
3300034140	Biocrust microbial communities from Mojave Desert, California, United States - 53SNC	Environmental	Open in IMG/M
3300034221	Biocrust microbial communities from Mojave Desert, California, United States - 33SMC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCTA_5888420	2032320003	Soil	LLARERPGWRVAEVLEVNDESGPTFEVVVESGDERRTVLVSADERFVGEWR
FNTS007_00285360	2119805009	Soil	VTREEIEALVVRERPGWRVVDVVEVNDESGPSFEVAVERGDERRTLLVGVDRRIDGERH
FNTS067_03925960	2119805012	Soil	LREGTAMTRDEIEALVARERPGWRVVDFIAVNDESGPGFEVTIESGGRQTTLIVAEGRRIVGERR
JGI12272J11983_11004871	3300000750	Soil	EDRAMTKEEIEALVARERPGWRVAEVIEVNDESGPSFEVTMERGDERRTLLLGADERIVGERR*
Ga0063454_1018420172	3300004081	Soil	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR*
Ga0058862_118763372	3300004803	Host-Associated	TRSEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVGEGKRIVGERR*
Ga0068868_1004762621	3300005338	Miscanthus Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVGEGKRIVGERR*
Ga0070692_107869512	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRLVGERR*
Ga0070663_1018927052	3300005455	Corn Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVGEGKRI
Ga0070686_1018413811	3300005544	Switchgrass Rhizosphere	VAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLISEGKRIVGERR*
Ga0058700_10085191	3300006021	Agave	MTKEEIEALVARERPGWRVVEVVEANDESGPSFEVAVERGDDRLTLLVGADERIVGERR*
Ga0082029_15981932	3300006169	Termite Nest	MTRDEIEALVAKERPGWRVVEVVELNDESGPTFEVVVEGGDDRVTLLVSADERIVGERR*
Ga0079222_119333981	3300006755	Agricultural Soil	MTRDEIEALVARERPGWRLVDFIEVNDESGPSFEVTIESGGRRVVLLIGEDESIAGERR*
Ga0079219_124575451	3300006954	Agricultural Soil	MMTKEEIETVVARGRPGWRVVDVAEVNEETGPSYEVAIERQDERRTLLIGP
Ga0079218_112915572	3300007004	Agricultural Soil	VLREEIEALVARERPGWRVVEVVEINDESGPSFEVVVEGGDDRVTLLVSADERIVGERH*
Ga0105679_100365222	3300007790	Soil	RRANTSTEARAVVREQIEALVARQRPGWRVVEVVEIDDESGPTFEVTVERGGERRTLLVSADERIVGERC*
Ga0105679_103186712	3300007790	Soil	VVREEIEALVARERPGWRVVEVVEINDESGPTFEVVVEGGDDRVTLLVSADERIVGERR*
Ga0105679_103267543	3300007790	Soil	MTRDEIEALVAKERPGWRVVGFIEVNDESGPSIEVTVESGGHQATLLVDEGKRIVGERR*
Ga0126307_111683271	3300009789	Serpentine Soil	VTRDEIEALVAKERPGWRVVDVIEVNDESGPSFEVTVESGDRRVTLLIGEGQRIVGERR*
Ga0126313_100900622	3300009840	Serpentine Soil	MTRDEIEALVRKERPGWRVVDVIEVNDESGPSFEVTVERGEGQRATLLVSEDRSIVGERR
Ga0126313_108070562	3300009840	Serpentine Soil	VATANLETDAVIRDEIEALVARERPGWRVVEVVEINDESGPSFEVTVERGHERRTVLVSTDERIVGERR*
Ga0126313_110558331	3300009840	Serpentine Soil	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVGEGKRIVSERR*
Ga0126305_110641772	3300010036	Serpentine Soil	VVRDEIEALVARERPGWRVAEVVEINDESGPTFEVVVEGGDDRVTLLVSADERIVGERR*
Ga0126304_112702321	3300010037	Serpentine Soil	VTREEIEALVVRERPGWRVVDVVEVSDESGPSFEVAAEGGDDGLAVLVSADERIVGGRR*
Ga0126309_102859472	3300010039	Serpentine Soil	VVARGRLGWRVLDVALVNEESGSSCEVAIEREDERRTLLVGPDRKIAGERR*
Ga0126309_104982142	3300010039	Serpentine Soil	VVREEIEALVARERPGWRVAEVVEINDESGPTFEVVVERGDERRTVLVSADERIVGERR*
Ga0126312_108638841	3300010041	Serpentine Soil	LSRGDRKREAHAVVRDGTEALLTRERPGWRVAEVVEVNDESGPSFEVVVERGDERRTVLVSADERTVGERR*
Ga0126312_113073252	3300010041	Serpentine Soil	VTRDEIEALVARERPGWRVVEVVEVNDESGPSFEVVVEGGDDRVTLLVSADERIVGERR*
Ga0126314_114111581	3300010042	Serpentine Soil	AARRCPRGDLVATANLETDAVIRDEIEALVARERPGWRVVEVVKVNDESGPSFEVTMERGHERRTVLVSTDERIVGERR*
Ga0126310_110285911	3300010044	Serpentine Soil	VIREEIEALVPRERPGWRVVDVLEINDESGPTFEVVVERGDERRTVLVSADERIVGERH*
Ga0126311_104167152	3300010045	Serpentine Soil	MMSREEVEAVVARGRPGWRVLDVALVNEESGSSCEVAIEREDERRTLLVGPDREIAGERR
Ga0126311_108598292	3300010045	Serpentine Soil	VREEIEAVVARERPGWRVAEVVEINDESGPTFEVVVERGDDRVTLLVSADERIVGERH*
Ga0126311_115166942	3300010045	Serpentine Soil	MTRDEIETLVRKERPGWRVVDVIEVNDESGPSFEVTVERGEGQRATLLVSEDRSIVGE
Ga0126306_108510723	3300010166	Serpentine Soil	VLREEIEALVARERPGWRVVEVVEVNDESGPTFEVVVEGGDDRVTLLVSADERIVGERR*
Ga0058701_103418791	3300010395	Agave	IEMLAAREWPGWRVAEAVEINDGSGPTCEVVVERGGERRTLLVGADGMIVGERH*
Ga0105246_117251441	3300011119	Miscanthus Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGARQTTLLVGEGKRIVGERR*
Ga0150985_1016347212	3300012212	Avena Fatua Rhizosphere	DTAVTRDEIEALVARERPGWRVVDFIEINDESGPSIEVTIESGGRQTTLLVAEGKRIVGERR*
Ga0150985_1026359531	3300012212	Avena Fatua Rhizosphere	VAKERPGWRVVDFIEVNDESGPNFEVTIENGGRRTTLLLTEGKQIVSERR*
Ga0150985_1066268693	3300012212	Avena Fatua Rhizosphere	VLQEGSAMTRGEIEALMAKERPGWRVVDFIEINDESGPSFEVTVENGGRQTTLLVGEGKRIVSERR*
Ga0150985_1066549003	3300012212	Avena Fatua Rhizosphere	MTRGEIEALVAKERPGWRVVDFTEINDESGPSFEVTVENGGRQTTLLVGESKRIVGERR*
Ga0150985_1081580653	3300012212	Avena Fatua Rhizosphere	GSAMTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIESSGRQTTLLVGEGKRIVGERR*
Ga0150985_1158214232	3300012212	Avena Fatua Rhizosphere	VKERPGWRVVDFIEVSDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR*
Ga0150985_1162177002	3300012212	Avena Fatua Rhizosphere	GEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR*
Ga0150985_1163425072	3300012212	Avena Fatua Rhizosphere	MSRDEIEALVARERPGWRVVDFIEINDESGPSFEITIESGGHHVVLLIGEDKSIVGERR*
Ga0150985_1170239402	3300012212	Avena Fatua Rhizosphere	MMRDEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVADAKRIVGERR*
Ga0150985_1172165171	3300012212	Avena Fatua Rhizosphere	MTRDEIDALLAKERLGWRVVDFIEVNDESGPSFEVRIESGGRRMTVIVAAGKR
Ga0150985_1199793011	3300012212	Avena Fatua Rhizosphere	MTRDEIEALVAKERPGWRVVDFIEVNDESGRSFEVAVESNGRQTTLLVAAGKRIVGERR*
Ga0150985_1202143552	3300012212	Avena Fatua Rhizosphere	MTRDEFEVLVARERPGWRVVDFIEINDESGPSFEVTIESGGRQTVLLVAEGKRIVGERR*
Ga0150985_1211699711	3300012212	Avena Fatua Rhizosphere	MSMLHEDIEALVARERPGWRVVEVIEVNDDSGPSFEVRLEKGEEQLTLLVDQDEEIVAERR*
Ga0150985_1213046552	3300012212	Avena Fatua Rhizosphere	VTRGEIEALVVKERPGWRVVDFIEVNDESGPSFEVTIENGGRQITLLVGEGKRIVGERR*
Ga0150985_1225562982	3300012212	Avena Fatua Rhizosphere	MIRDEIEAVVARERPGWRVVDYIEVNDESGPSFEVTIESGGRKTTLLIDEGMRIVGERH*
Ga0150984_1031332472	3300012469	Avena Fatua Rhizosphere	MRDEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVADAKRIVGERR*
Ga0150984_1043054662	3300012469	Avena Fatua Rhizosphere	MTRDQIEALVAKERPGWRVVDFIEVNDESGPSFEVTIESGGRQTTLLIDEGKRIVGERR*
Ga0150984_1063186322	3300012469	Avena Fatua Rhizosphere	GSAMTRGEIEALVVKERPGWRVVDFIEVSDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR*
Ga0150984_1111110071	3300012469	Avena Fatua Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQITLLVGEGKRIVGERR*
Ga0150984_1124446343	3300012469	Avena Fatua Rhizosphere	MSRDEIEALVARERPGWRVVDFIEINDESGPSFEITIESGGHHAVLLIGEDKSIVGERR*
Ga0150984_1164645541	3300012469	Avena Fatua Rhizosphere	MSMLHEDIEALVARERPGWRVVEVIEVNDESGPSFEVRLEKGEEQLTLLVDQDEEIVAERR*
Ga0150984_1221151163	3300012469	Avena Fatua Rhizosphere	VAKERPGWRVVDFIEVNDESGPSFEVTIENGGRRTTLLLTEGKQIVSERR*
Ga0150984_1226783381	3300012469	Avena Fatua Rhizosphere	AMTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIESSGRQTTLLVGEGKRIVGERR
Ga0150984_1234657793	3300012469	Avena Fatua Rhizosphere	VTRDEIKALVAKERPGWRVLDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR*
Ga0157302_104632802	3300012915	Soil	MTRGEIEALVAKERPGWRVVDFIEVNDESGSSFEVTVENGGRQTTLLVSEGKHIVGERR*
Ga0164298_105390992	3300012955	Soil	MTRDEIEALVAKERPGWRVVDFIEINDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR*
Ga0164308_103834422	3300012985	Soil	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVIVENGGRQTTLLVGEGKRIVGERR*
Ga0164306_110629381	3300012988	Soil	MTRSEIEALVARERPGWRLVDFLEINAEAGPSIEVVIESGGRRMTLILDPARRIIGEQR*
Ga0157375_107638992	3300013308	Miscanthus Rhizosphere	MTRDEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVSEGKHIVGERR*
Ga0157375_123263882	3300013308	Miscanthus Rhizosphere	PGVIDVSGGRVLAMNRDQIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIIGERR*
Ga0182000_103906241	3300014487	Soil	MAMTGRRSPTRPGWRVVEVVEINDESGPTFEVAVEGGDGRVTLLVSADERIVGERR*
Ga0182000_104365652	3300014487	Soil	VVREEIEALVARERPGWRVAEVVEINDESGPTFEVVVERGDERQTLLVGADERLVGERH*
Ga0182000_104386452	3300014487	Soil	VVREEIEALVARERPGWRVVAVLEINDESGPTFEVIVERGGERRTVLVSADE
Ga0182000_106574582	3300014487	Soil	MTRDEIDALLAKERPGWRVVDFIEVNDESGPSFEVTIESGGRQVTLLVAEGKRIVGERR*
Ga0182001_102784041	3300014488	Soil	VVREEIEALVARERPGWRVAEVVEINDESGPTFEVIVERGDERRTLLVSADERIVGERR*
Ga0190266_113747192	3300017965	Soil	VLREEIEALVARERPGWRVVEVVEVNDESGPTFEVVVEGGDDRVTLLVSAD
Ga0190275_101650502	3300018432	Soil	MMSREEVEAVVARGRPGWRVLDVALVNEESGSSCEVAIEREDERRTLLVGPDREIAGECR
Ga0190275_102186072	3300018432	Soil	MLREEIEALVARERPGWRVVEVVEINDESGPSFEVVVEGGDDRVTLLVSADERIVGERR
Ga0190275_104845551	3300018432	Soil	MLREEIEALVARERPGWRVVDVMEINDESGPSFEVTVEGGDDRVTLLVSADERIVGERR
Ga0190275_110853611	3300018432	Soil	VVRDEIEALVARERPGWRVVEVVEINDESGPSFEVVVEGGDDRVTLLVSADERIVGERR
Ga0190275_114331552	3300018432	Soil	LVARERPGWRVVEVVEINDESGPSFEVVVEGGDDRVTLTLLVSADERIVGERR
Ga0190275_127201642	3300018432	Soil	VTKERPGWRVVDFIEVSDESGRSFEVTVENGGRQSTLLVAEGKRIVGERR
Ga0190269_109477262	3300018465	Soil	VVREEIEALVARERPGWRVAEVVEINDESGPTFEAVVERGDARRTVLVSADERIVGERH
Ga0190269_112542321	3300018465	Soil	VVREEIEALVARERPGWRVVEVVEVNDESGPSFEVVVEGGDDRVTLLVGADERIVGERR
Ga0190268_104924991	3300018466	Soil	ALVARERPGLRVVDVMEINDESGPSFEVTVEGGDDRVTLLVSADERIVGERR
Ga0190268_106425852	3300018466	Soil	EAVLARERPGWRVLEVVEINDESGPSFEVTVERGGERRTVLVSADERIVGERR
Ga0190268_113898531	3300018466	Soil	VLREEIEALVARERPGWRVVEVVEINDESGPSFEVVVEGGDDRVTLLVSADERIVGERR
Ga0190268_115960131	3300018466	Soil	MTRDEIEALVTKERPGWRVVDFIEVNDESGPSFEVTIESGGRQTTLIVAEGKRIVGERR
Ga0190270_124465761	3300018469	Soil	VLREEIEALVARERPGWRVVEVVEINDESGPSFEVVVEGGDDRVTLLVSGDERIVGERR
Ga0193607_10458783	3300018892	Soil	VTKEEIEALMARERPGWRVAGVLEADDGSGPSSEVAVERGDDRLTLLVGVDERIVGERR
Ga0190273_100997143	3300018920	Soil	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIESGGRQTTLLVGEGKRVVGERR
Ga0190273_104144011	3300018920	Soil	MTRDEIEALVAKERPGWRVVDFIEVNDESGRSFEVAVESNGRQTTLLVAAGKRIVGERR
Ga0193605_11362471	3300018984	Soil	MTRDAIEALVARERPGWRVAEVVEVNDESGPSFEVTVEGGDSRVTLLVSA
Ga0193597_12067021	3300019142	Soil	VTKEEIEALMARERPGWRVAGVLEADDGSGPSFEVAVERGDDRLTLPVGADERIVGERR
Ga0190267_106296961	3300019767	Soil	VLKEEIEALVARERPGWRVVEVVEISDESGPSFEVVVEGGDDRVTLLVSADERIVGERR
Ga0190267_111255592	3300019767	Soil	MTGDEIEAVVAKERPGWRVVDFIEVNDEGGPGFEVTVENGDQRRTVIVSAGKR
Ga0207688_105885571	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR
Ga0207704_109256662	3300025938	Miscanthus Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVSDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR
Ga0268266_118342881	3300028379	Switchgrass Rhizosphere	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGARQTTLLVGEGKRIVGERR
Ga0247827_110668911	3300028889	Soil	MTRGEIEALVAKERPGWRVVDFIAVNDESGTSFEVTIESGGRQTTLLVAEGRCIVGERR
Ga0308183_10122153	3300030988	Soil	AMTRGEIEALVAKERPGWRVVDFIEVNDKSGPSFEVTIESGGRQTTLLVGEGKRVVGKRR
Ga0308189_100766432	3300031058	Soil	MTRGEIEALVAKVRPGWRVVDFIEVNDESGTSFEVTIENGSRQTTLLVGEGKRIVGERR
Ga0308189_104153852	3300031058	Soil	MTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLIGEAKRIVGERR
Ga0308201_100105655	3300031091	Soil	AMTRGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTIENGGRQTTLLVGEGKRIVGERR
Ga0308201_100452991	3300031091	Soil	RGEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR
Ga0308201_100950171	3300031091	Soil	SAMTRDEIETLVKKERPGWRVVDFIEVNDESGPSFEVTIESGGRQTTLLVGEAKRIVGER
Ga0308201_100979761	3300031091	Soil	DIEALMAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRIVGERR
Ga0308201_101153191	3300031091	Soil	SAMTRDEIEALVAKERPGWRVVDFIEVNDESGPSFEVTVENGGRQTTLLVGEGKRLVGER
Ga0308175_1004423932	3300031938	Soil	MTRSEIEALVARERPGWRLVDFLEINAEAGPSIEVVIESESGGRRMTLILDPARRIIGEQ
Ga0334936_040084_13_195	3300034007	Biocrust	MMSREEVEAVVARGRPGWRVLDVALVNGESGPSCEVAIEREDERRTLLVGPDRKIAGERR
Ga0334929_013324_1489_1668	3300034135	Hypolithic Biocrust	VTREEIEALVVRERPGWRVVDVVEVNDESGPSFEVAVEGGDDRVTLLVGADGRIVGERR
Ga0334929_119020_375_548	3300034135	Hypolithic Biocrust	RDEIEALVARERPGWRVVEVVEVNDESGPTFEVVVEGGDDRVTLLVSADERIVGERR
Ga0334957_054064_353_532	3300034140	Biocrust	MTRDEIEALVARERPGWRVVDLIEVNDESGPSFEVTIESGSHRAVLLVGQDASIVGERH
Ga0334937_175820_413_592	3300034221	Biocrust	VVREEIEALVARERPGWRVVEVMEINDESGPTFEVVVEGGDGRLTLLVSADERIVGERR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087716

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences