Metagenome / Metatranscriptome Family F087700

Basic Information
Family ID	F087700
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	44 residues
Representative Sequence	LAIGFAAVNPKKLKGAKSFTIAFSVWAAYVVCRVGWAFIFS
Number of Associated Samples	95
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.82 %
% of genes near scaffold ends (potentially truncated)	97.27 %
% of genes from short scaffolds (< 2000 bps)	88.18 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (63.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.182 % of family members)
Environment Ontology (ENVO)	Unclassified (23.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.636 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1JGI12270J11330_102070362 2JGI12053J15887_103365762 3JGI25381J37097_10433741 4JGI25384J37096_102145471 5JGI25389J43894_10456792 6Ga0062385_100294664 7Ga0062385_109582031 8Ga0066395_110378941 9Ga0062388_1012203892 10Ga0062388_1023525032 11Ga0073909_104506852 12Ga0070733_110758241 13Ga0066693_102113402 14Ga0066702_105044971 15Ga0070762_110989822 16Ga0068864_1021991002 17Ga0075018_102318972 18Ga0070716_1009799801 19Ga0099795_103112312 20Ga0099830_100485692 21Ga0099828_107917822 22Ga0066709_1013854511 23Ga0066709_1028151542 24Ga0116219_102286662 25Ga0134067_100394282 26Ga0134065_104093381 27Ga0126370_103155161 28Ga0126370_108784771 29Ga0126370_109996161 30Ga0126378_107582012 31Ga0137393_105967641 32Ga0137389_107137131 33Ga0137383_102222102 34Ga0137382_102951252 35Ga0137363_109317152 36Ga0137399_116601312 37Ga0137362_111420432 38Ga0137380_106732781 39Ga0137358_109287772 40Ga0137396_100379211 41Ga0137419_115276492 42Ga0137404_110221562 43Ga0137410_108582581 44Ga0164303_102557462 45Ga0134076_103706311 46Ga0164306_116955842 47Ga0137414_10308322 48Ga0137420_10015692 49Ga0182038_119080701 50Ga0187802_103582342 51Ga0187818_100225974 52Ga0187824_103231752 53Ga0187801_103863612 54Ga0187853_102990772 55Ga0187819_106954901 56Ga0187776_104993601 57Ga0187816_100275811 58Ga0187770_110952341 59Ga0066669_100173205 60Ga0066669_117209831 61Ga0210403_104053722 62Ga0210403_105197631 63Ga0210399_113047412 64Ga0210399_115443831 65Ga0210401_103680152 66Ga0210404_106160612 67Ga0210406_112911621 68Ga0210396_114127851 69Ga0210388_100435331 70Ga0210394_101247671 71Ga0210402_1000942311 72Ga0210410_105511342 73Ga0210409_103847061 74Ga0242655_101405292 75Ga0208692_10281902 76Ga0207685_101114892 77Ga0207660_106471431 78Ga0209239_13407222 79Ga0209154_12618911 80Ga0209687_10357852 81Ga0208324_11728651 82Ga0209011_11492562 83Ga0209488_107705122 84Ga0209488_110303021 85Ga0209415_100907671 86Ga0209526_109959242 87Ga0222749_103929282 88Ga0310039_103749011 89Ga0310686_1066329381 90Ga0318502_107721921 91Ga0307475_103666872 92Ga0307475_106341932 93Ga0306923_121385121 94Ga0306921_103239911 95Ga0318556_103264522 96Ga0307470_102596022 97Ga0307470_113119011 98Ga0307471_10000010138 99Ga0307471_1000489264 100Ga0307471_1033117831 101Ga0307471_1038848492 102Ga0307472_1012902212 103Ga0306920_1024493222 104Ga0335078_118225631 105Ga0335081_117608681 106Ga0335081_121176661 107Ga0335083_113842941 108Ga0316212_10031934 109Ga0314864_0207033_34_171 110Ga0326724_0357395_1_138
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1JGI12270J11330_102070362 2JGI12053J15887_103365762 3JGI25381J37097_10433741 4JGI25389J43894_10456792 5Ga0062385_100294664 6Ga0062385_109582031 7Ga0066395_110378941 8Ga0062388_1012203892 9Ga0062388_1023525032 10Ga0073909_104506852 11Ga0068864_1021991002 12Ga0099828_107917822 13Ga0066709_1013854511 14Ga0126370_109996161 15Ga0137383_102222102 16Ga0137396_100379211 17Ga0137404_110221562 18Ga0137410_108582581 19Ga0164306_116955842 20Ga0187801_103863612 21Ga0187853_102990772 22Ga0210401_103680152 23Ga0210406_112911621 24Ga0210410_105511342 25Ga0210409_103847061 26Ga0207685_101114892 27Ga0209687_10357852 28Ga0209526_109959242 29Ga0310039_103749011 30Ga0306923_121385121 31Ga0306921_103239911 32Ga0307471_10000010138 33Ga0307471_1038848492 34Ga0335078_118225631 35Ga0335081_121176661 36Ga0335083_113842941
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40. 1Ga0137414_10308322 2JGI12270J11330_102070362 3JGI12053J15887_103365762 4JGI25381J37097_10433741 5Ga0062385_100294664 6Ga0062385_109582031 7Ga0062388_1012203892 8Ga0062388_1023525032 9Ga0070733_110758241 10Ga0066702_105044971 11Ga0070762_110989822 12Ga0068864_1021991002 13Ga0099830_100485692 14Ga0066709_1013854511 15Ga0066709_1028151542 16Ga0126370_109996161 17Ga0137389_107137131 18Ga0137383_102222102 19Ga0137404_110221562 20Ga0137410_108582581 21Ga0134076_103706311 22Ga0164306_116955842 23Ga0182038_119080701 24Ga0187802_103582342 25Ga0187824_103231752 26Ga0187801_103863612 27Ga0187819_106954901 28Ga0187776_104993601 29Ga0187816_100275811 30Ga0187770_110952341 31Ga0066669_117209831 32Ga0210403_105197631 33Ga0210399_113047412 34Ga0210396_114127851 35Ga0210388_100435331 36Ga0210402_1000942311 37Ga0207685_101114892 38Ga0207660_106471431 39Ga0209687_10357852 40Ga0209488_110303021 41Ga0209526_109959242 42Ga0222749_103929282 43Ga0318502_107721921 44Ga0307475_103666872 45Ga0306923_121385121 46Ga0307471_10000010138 47Ga0307471_1000489264 48Ga0307471_1038848492 49Ga0306920_1024493222 50Ga0335078_118225631 51Ga0335081_117608681 52Ga0335081_121176661 53Ga0335083_113842941 54Ga0314864_0207033_34_171
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.83% β-sheet: 0.00% Coil/Unstructured: 52.17%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01702	TGT	50.00
PF07549	Sec_GG	4.55
PF02699	YajC	2.73
PF13620	CarboxypepD_reg	0.91
PF00005	ABC_tran	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0343	Queuine/archaeosine tRNA-ribosyltransferase	Translation, ribosomal structure and biogenesis [J]	50.00
COG1549	Archaeosine tRNA-ribosyltransferase, contains uracil-DNA-glycosylase and PUA domains	Translation, ribosomal structure and biogenesis [J]	50.00
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	4.55
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	4.55
COG1862	Protein translocase subunit YajC	Intracellular trafficking, secretion, and vesicular transport [U]	2.73

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	36.36 %
Unclassified	root	N/A	63.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	36.36 %
Unclassified	root	N/A	63.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.36 %
Unclassified	root	N/A	63.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	9.09 %
Unclassified	root	N/A	63.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.91 %
Unclassified	root	N/A	63.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.91 %
Unclassified	root	N/A	63.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.91 %
Unclassified	root	N/A	63.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.91 %
Unclassified	root	N/A	63.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.82 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.91 %
Unclassified	root	N/A	63.64 %

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10207036	Not Available	664	Open in IMG/M
3300001661\|JGI12053J15887_10336576	Not Available	732	Open in IMG/M
3300002557\|JGI25381J37097_1043374	Not Available	752	Open in IMG/M
3300002561\|JGI25384J37096_10214547	Not Available	563	Open in IMG/M
3300002916\|JGI25389J43894_1045679	Not Available	745	Open in IMG/M
3300004080\|Ga0062385_10029466	All Organisms → cellular organisms → Bacteria	2180	Open in IMG/M
3300004080\|Ga0062385_10958203	Not Available	572	Open in IMG/M
3300004633\|Ga0066395_11037894	Not Available	501	Open in IMG/M
3300004635\|Ga0062388_101220389	Not Available	745	Open in IMG/M
3300004635\|Ga0062388_102352503	Not Available	557	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.82%
Plants	Host-Associated → Plants	1.82%
Terrestrial	Environmental → Terrestrial	86.36%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	10.91%
Peat	Environmental → Terrestrial → Peat	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%
Roots	Host-Associated → Plants → Roots	0.91%
Sediment	Environmental → Aquatic → Sediment	0.91%
Soil	Environmental → Terrestrial → Soil	85.45%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.36%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.64%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.27%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.18%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.91%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.55%
Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Roots	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.18%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M

Showing 1 to 10 of 95 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_102070362	3300000567	Peatlands Soil	CKNVDVFVIWYLLLIAIGFAGTNPKKLKGGKSFTIAFSVMAVYLVLRVGIAFIFS*
JGI12053J15887_103365762	3300001661	Forest Soil	DIFTFWTLILLAIGFAAVNPKKLKGSKTYTIAFGVWAAFVACRVGWAFIFS*
JGI25381J37097_10433741	3300002557	Grasslands Soil	IGFAAVSPKKLKGSKTYTIAFGVWAAFVVLRVCWAFIFS*
JGI25384J37096_102145471	3300002561	Grasslands Soil	AIGFAAVNPKKLKGAKSFTIAFTVWAVYVVCRVGWAFIFS*
JGI25389J43894_10456792	3300002916	Grasslands Soil	ILLAIGFAAVNPKKLKGAKSFTIAFSVWVVYVVCRVGWAFIFS*
Ga0062385_100294664	3300004080	Bog Forest Soil	FTIWTLILVAIGFAAVNPKKLKGGAAYAIVFGVYGAYVVVRVIWAFAFS*
Ga0062385_109582031	3300004080	Bog Forest Soil	LCKSIDVFSIWTMILLAIGFAATSPKKLKGSKPYMIVFGLWAAFVVCRVGWAFIFS*
Ga0066395_110378941	3300004633	Tropical Forest Soil	LLAIGFAAVNPKRLKGAKPFTIAFTVWAVFTAIRVGGALIFS*
Ga0062388_1012203892	3300004635	Bog Forest Soil	IGFAATSPKKLKGSKAYMIVFGLWVAFVICRVGWAFAFS*
Ga0062388_1023525032	3300004635	Bog Forest Soil	WTLILIAIGFAATSPKKLKGAKPYIVAFGVWAAYVVARVGFAFAFS*
Ga0073909_104506852	3300005526	Surface Soil	VINPKKLKGGKPYVIAFSVWAAWVVCRVGWAFIFS*
Ga0070733_110758241	3300005541	Surface Soil	LVLLAIGFAATNRKKLKGSKSFTIALSVWAVYVVCRVGWAWIFS*
Ga0066693_102113402	3300005566	Soil	AIGFAAVNPKKLKGGKSFTIAFSVWAVYVLCRVGWAFIFS*
Ga0066702_105044971	3300005575	Soil	ILLAIGFAATNPKKLRGSKAFTIAFSVWAVYVVCRVGGAWIFS*
Ga0070762_110989822	3300005602	Soil	AIGFAATNPKKLKGAKPYVIAFGVWAAYVVCRVGFAFAFS*
Ga0068864_1021991002	3300005618	Switchgrass Rhizosphere	ATNPRKLRGGKAFTIVVTVWAVYVVLKVGRAFIFS*
Ga0075018_102318972	3300006172	Watersheds	FTFWTLILLAIGFAAVNPKKLKGAKSFTIAFGVWAAFVVCRVGWAFIFS*
Ga0070716_1009799801	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LAIGFAAVSPKKLKGSKTYTIAFGVWAAFVVLRVCWAFIFS*
Ga0099795_103112312	3300007788	Vadose Zone Soil	TLILLAIGFAAVNPKKLRGAKAFTIAFSVWAVFVVCRVGWAFIFS*
Ga0099830_100485692	3300009088	Vadose Zone Soil	LLAIGFAAVNPKKLRGGKSYTIAFTVWAAFVVIRVGWAFIFS*
Ga0099828_107917822	3300009089	Vadose Zone Soil	ATNPKKLRGSKAFTIAFSVWAVFVVCRVGWAFIFS*
Ga0066709_1013854511	3300009137	Grasslands Soil	FDIFTFWILVLIAIGFAVANPKKLKGGKPFSIAFSVWAVWAVIRTGLAYVFS*
Ga0066709_1028151542	3300009137	Grasslands Soil	LIAIGFAAVNPRKLKGAKSFTIAFTVWAVYVVLHVGWAFIFS*
Ga0116219_102286662	3300009824	Peatlands Soil	WYLLLIAIGFAGTNPKKLKGGKSFTIAFSVMAVYLVLRVGIAFIFS*
Ga0134067_100394282	3300010321	Grasslands Soil	LAIGFAAVNPKRLKGAKAFTIAFGVWAVYVVCRVGWAFIFS*
Ga0134065_104093381	3300010326	Grasslands Soil	IGFAAVNPKKLKGGKSFTIAFSVWAIYVLCRVGWAFIFS*
Ga0126370_103155161	3300010358	Tropical Forest Soil	AVNPKKLKGAKSFTIAFTVWAVYVVLRVGWAFIFS*
Ga0126370_108784771	3300010358	Tropical Forest Soil	FDVFAFWTLILIAIGFAAVNPRKLKGAKSFTIAFSVWAVYVLCRVGWAFIFS*
Ga0126370_109996161	3300010358	Tropical Forest Soil	TLCKQVDVFTFWILALIAIGFAAANPKKLKGAKAFTIAFSVWAVWVVLRTGIAFVFS*
Ga0126378_107582012	3300010361	Tropical Forest Soil	LLAIGFAAVNPKKLKGAKPFTIAFTVWAVFTAIRVGGALIFS*
Ga0137393_105967641	3300011271	Vadose Zone Soil	LLAIGFAAVNPKKLKGGKSYTIAFTVWAAFVVIRVGWAFIFS*
Ga0137389_107137131	3300012096	Vadose Zone Soil	FAATNPKKLRGSKAFTIAFSVWAVFVLCRVGRAFIFS*
Ga0137383_102222102	3300012199	Vadose Zone Soil	FWILILLAIGFSAVNPKKLKGAKSFTIAFTLWAVFLVIRVGIAFIFS*
Ga0137382_102951252	3300012200	Vadose Zone Soil	FAAVNPKKLKGSKTYTIAFGVWAAFVACRVGWAFIFS*
Ga0137363_109317152	3300012202	Vadose Zone Soil	LLAIGFAAVNPKKLKASKTYTIAFGVWAAFMACRVGWAFIFS*
Ga0137399_116601312	3300012203	Vadose Zone Soil	WTLILLAIGFAATNPKKLRGSKAFTIAFSVWAVYVVCRVGGAWIFS*
Ga0137362_111420432	3300012205	Vadose Zone Soil	AIGFAAVNPKKLKGAKSFTIAFGMWAAYAVCRVGWAFIFS*
Ga0137380_106732781	3300012206	Vadose Zone Soil	FDIFTFWTLILLAVGFAAVNPKKLKGSKTYTVAFGVWAAFVACRVGWAFIFS*
Ga0137358_109287772	3300012582	Vadose Zone Soil	WTLILLAIGFAATNPKKLKGSKAFTIAFSVWAVYVVCRVGGAWIFS*
Ga0137396_100379211	3300012918	Vadose Zone Soil	MWTLILLAIGFAAVNPKKLKGGKSYTIAFTVWAAFVVIRVG
Ga0137419_115276492	3300012925	Vadose Zone Soil	FWTLILLAIGFAAVNPKKLKGSKTYTIAFGVWAAFVACRVGWAFIFS*
Ga0137404_110221562	3300012929	Vadose Zone Soil	FTFWILALTAIGFAAANPKKLKGGKAFTIVFSVWAVWVVLRVGWAFIWS*
Ga0137410_108582581	3300012944	Vadose Zone Soil	IWMLVLLAIGFAAVNPKKLKGGTSYVIAFSVWGALVAVKVLWAFVAS*
Ga0164303_102557462	3300012957	Soil	LILLAIGFAAVNPKKLKGSKPYMIAFTVYAVFVVLRVGFAFIFS*
Ga0134076_103706311	3300012976	Grasslands Soil	GFAAVNPKRLKGAKAFTIAFGVWAVYVVCRVGWAFIFS*
Ga0164306_116955842	3300012988	Soil	FSFWNLMLLAIGFGATNPRKLKGGKAFTIVFTVWVVYVVLKVGRALIFS*
Ga0137414_10308322	3300015051	Vadose Zone Soil	LAIGFAAVNPKKLKGAKSFTIAFSVWAAYVVCRVGWAFIFS*
Ga0137420_10015692	3300015054	Vadose Zone Soil	ILLAIGFAAVNPKKLKDAKSFTIAFSVWAAYVVCRVGWAFIFS*
Ga0182038_119080701	3300016445	Soil	ILILLAIGFAAVNPKRLKGAKPFTIAFTVWAVFSAIRVGGALIFS
Ga0187802_103582342	3300017822	Freshwater Sediment	FWTLILLAIGFAATSPKKLKGAKPYVIAFSVWAAFVVLRVGFAFIFS
Ga0187818_100225974	3300017823	Freshwater Sediment	GFAAVNPRKLKGAKSFTIAFSVWAAFVILRVGWAFIFS
Ga0187824_103231752	3300017927	Freshwater Sediment	FTIWTLVLLAIGFAVVNPKKLKGGKSYMIAFGVWAAFVVCRVGFAFIFS
Ga0187801_103863612	3300017933	Freshwater Sediment	IAIGFAAVNPRKLKGATPFVIVFSVWGAFVVIRTLWAFIFS
Ga0187853_102990772	3300017940	Peatland	LVLLAIGFAAVNPRKLKGSKPYVVAFSVWGVMVVVKVLWAFIFS
Ga0187819_106954901	3300017943	Freshwater Sediment	IWTLVLIAIGFAAVNPRKLKGSKPYVIAFSVWGVVVFVKVVWAFISS
Ga0187776_104993601	3300017966	Tropical Peatland	ILLAIGFAAVNPKKLKGAKPFMIAFSVWAAFLVIRVGAAFIFS
Ga0187816_100275811	3300017995	Freshwater Sediment	TIWTLILIAIGFAAVNPRKLKGAKSFTIAFSVWAAFVILRVGWAFIFS
Ga0187770_110952341	3300018090	Tropical Peatland	LILLAIGFAAVNPRKLKGSKPYVIAFSVWGALVVVKVLWAWVFS
Ga0066669_100173205	3300018482	Grasslands Soil	ILLAIGFAAVNPKKLKGAKSFTIALTVWAVYVVCRVGWAFIFS
Ga0066669_117209831	3300018482	Grasslands Soil	IFVFWILILLAIGFSAVNPKKLKGAKPFTIAFTVWAIYVLIRVGVAFIFS
Ga0210403_104053722	3300020580	Soil	LWTLILLSIGFAATNPKKLKGSKAFTIAFSVWAVYVVCRVGSAWIFS
Ga0210403_105197631	3300020580	Soil	TLILIAIGFAVTSPKRLKGSKPYVIAFGVWAAYVVCRVGFAFAFS
Ga0210399_113047412	3300020581	Soil	FSAVNPKKLKGAKPFTIAFSVWAVFVLCRVGWAFIFS
Ga0210399_115443831	3300020581	Soil	LAIGFATTNPKKLKGSKAFTIALSVWAVYVVCRVGSAWIFS
Ga0210401_103680152	3300020583	Soil	VALLKSFDVFTFWTLILIAIGFAVTSPKKLKGSKPYVIAFGVWAAYVVCRVGFAFAFS
Ga0210404_106160612	3300021088	Soil	AIGFAATNPKKLRGSKAFTIAFSVWAVYVVLRVGGAWIFS
Ga0210406_112911621	3300021168	Soil	ATNPRKLKGSKSFSIAFGIWAAFVICRVGWAFIVS
Ga0210396_114127851	3300021180	Soil	WMLILIAIGFAAVNPRKLKGAKPYTIAFTVWAVFVVIRTGWAFIFS
Ga0210388_100435331	3300021181	Soil	TFWTLILIAIGFAVTNPKKLKGGKPYMIAFGVWAAYVVCRVGIAFIFS
Ga0210394_101247671	3300021420	Soil	IAIGFAAVNPRKLKGAKSFTIAFSVWAVYVVCRVGWAFIFS
Ga0210402_1000942311	3300021478	Soil	FSIWTLILLAIGFAATSPKKLKGGKPFAIAFGLWAAFVICRVGWAFAFS
Ga0210410_105511342	3300021479	Soil	GIGFAATNPKKLKGGTSFGIAFGMFAAYVVIRVGLAFAFS
Ga0210409_103847061	3300021559	Soil	GFAVTSPKKLKGSKPYVVAFSVWAAYVVCRVGFAFAFS
Ga0242655_101405292	3300022532	Soil	WTLILIAIGFAVTNPKKLKGGKPYMIAFGVWAAYVVCRVGFAFIFS
Ga0208692_10281902	3300025472	Peatland	IWILVLLAIGFAAVNPRKLKGSKPYVVAFSVWGVMVVVKVLWAFIFS
Ga0207685_101114892	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	WTMILLAIGFAATNPRKLRTGRAFAIVFAVWAAYVVLKVGRAFIFS
Ga0207660_106471431	3300025917	Corn Rhizosphere	GFAVINPKKLKGGKPYVIAFSVWAAWVLCRVGWAFIFS
Ga0209239_13407222	3300026310	Grasslands Soil	IAIGFAAVNPRKLKGAKSFTIAFTVWAVYVVLHVGWAFIFS
Ga0209154_12618911	3300026317	Soil	ILLAMGFAAVNPKKLKGAKAFTIAFSVWAVYVVCRVGWAFIFS
Ga0209687_10357852	3300026322	Soil	GFAAVNPQKLKGAKPFTIAFSVWAINVLCRVGWAFIFS
Ga0208324_11728651	3300027604	Peatlands Soil	IDIFTVWTLVLLAIGFAAVNPRKLKGSKPYVVAFSVWGAMVVVKVLWAFVFS
Ga0209011_11492562	3300027678	Forest Soil	LLAIGFAAVNPKKLRGSKTYTIAFGVWAAFVACRVGWAFIFS
Ga0209488_107705122	3300027903	Vadose Zone Soil	GFAATNPKKLKGSKAFTIAFSVWAVYVVCRVGGAWIFS
Ga0209488_110303021	3300027903	Vadose Zone Soil	ILLAIGFAATNPKKLKGSKAFTIAFSVWAAYVLCRVGWASIFS
Ga0209415_100907671	3300027905	Peatlands Soil	LGKSFDVFTLWTLILIAIGFAAVNPKKLKGAKSFTIAFGVWAAYVVCRVGLAFIFS
Ga0209526_109959242	3300028047	Forest Soil	KSFDIFVIWLLILLSIGFAAVNPKKLKGSKPYTIAFTVYAVFVVLRVCWAFIFS
Ga0222749_103929282	3300029636	Soil	IGFAATNPRKLKGSKSFSIAFGIWAAFVICRVGWAFIVS
Ga0310039_103749011	3300030706	Peatlands Soil	AIGFAGTNPKKLKGGKSFTIAFSVMAVYLVLRVGIAFIFS
Ga0310686_1066329381	3300031708	Soil	ILIAIGFAATNPKKLKGAKPYVIAFGVWAAYVVCRVGFAFAFS
Ga0318502_107721921	3300031747	Soil	TLVLLAIGFAAVNPKKLRGGKSYAIAFSVWGAMVVGKVLWAFVTS
Ga0307475_103666872	3300031754	Hardwood Forest Soil	TLILLAIGFTAINPKKLKGAKSFTIAFTVWAVFVVCRVGWAFIFS
Ga0307475_106341932	3300031754	Hardwood Forest Soil	IGFAAVNPKKLKGAKSFTIAFTVWAVFVVCRVGWAFIFS
Ga0306923_121385121	3300031910	Soil	IWTLILLAIGFAAVNPKRLKTGKAIGIALTVWLAYVVVRTGIAWVMS
Ga0306921_103239911	3300031912	Soil	IDIFTLWTLVLLAIGFAAVNPKKLRGSKSYAIAFSVWGAVVVVKVLWAFVTS
Ga0318556_103264522	3300032043	Soil	LILLAIGFAAVNSKKLKGAKPFTIAFTVWALYVVCRVGWAFIFS
Ga0307470_102596022	3300032174	Hardwood Forest Soil	SIGFAATNPKKLKGSKAFTIAFSVWAVYVVCRVGGAWIFS
Ga0307470_113119011	3300032174	Hardwood Forest Soil	GFAATNPKKLKGGTSFGIAFGMFAAYVVIRVGLAFAFS
Ga0307471_10000010138	3300032180	Hardwood Forest Soil	VIWILLLIAIGFAATNPKKLKGARAFTIAFTVFAAYVVIRMGIAFAFS
Ga0307471_1000489264	3300032180	Hardwood Forest Soil	ALIGIGFAATNPKKLKGGTSFGIAFGMFAAYVVIRVGLAFAFS
Ga0307471_1033117831	3300032180	Hardwood Forest Soil	FWNMMLLAIGFGATNPRKLRGGKAFTIVFTVWAVYVVLKVGRAFIFS
Ga0307471_1038848492	3300032180	Hardwood Forest Soil	ILILIAIGFSAVNPKKLKGSKPYMIAFTVYGVFVVLRVGWAFIFS
Ga0307472_1012902212	3300032205	Hardwood Forest Soil	AVNPKKLKGAKSFTIAFGVWAAYVVCRVGWAFIFS
Ga0306920_1024493222	3300032261	Soil	TIWTLILLAIGFAAANPKKLKGSKAFSIAFSVWAAYVVLRVGWAFIFS
Ga0335078_118225631	3300032805	Soil	KLILLGIGFSVLNPKKLKGAKPYTIIFGLFLVYIVIRVGIAFIFS
Ga0335081_117608681	3300032892	Soil	TFWTLILLAIGFAATSPKKLKGAKPYVVAFSVWAVYVVLRVGWNFIFS
Ga0335081_121176661	3300032892	Soil	WSLILIAIGFAAVNPKKMKTGKAMGIAFGVWIVFVVIRTGIAWVFS
Ga0335083_113842941	3300032954	Soil	FAAVNPKKLKGGKSYTIVFGVFAVWVVCRVAWGFISS
Ga0316212_10031934	3300033547	Roots	GFAATNPKKLKGAKPYVIAFGVWAAYVVCRVGFAFAFS
Ga0314864_0207033_34_171	3300033805	Peatland	MLVLLAIGFAAVNPRKLAGSKPYVIAFSVWGAMVAVKVLWAFIFS
Ga0326724_0357395_1_138	3300034091	Peat Soil	YLLLIAIGFAATNPKKLKGGKSFTIAFTVMAVYLVLRVGIAFIFS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087700

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences