Metagenome / Metatranscriptome Family F087688

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087688
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	AEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Number of Associated Samples	102
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	2.00 %
% of genes near scaffold ends (potentially truncated)	89.09 %
% of genes from short scaffolds (< 2000 bps)	80.00 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (90.909 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (11.818 % of family members)
Environment Ontology (ENVO)	Unclassified (20.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.818 % of family members)

⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0066680_101971521 2Ga0070708_1001655081 3Ga0070731_104533902 4Ga0066697_105664131 5Ga0070732_100407631 6Ga0066700_110868322 7Ga0066693_103398982 8Ga0066694_101566651 9Ga0070762_108658301 10Ga0070766_109719731 11Ga0066789_101141241 12Ga0070717_101383014 13Ga0066656_109323741 14Ga0075029_1001537493 15Ga0075030_1014655602 16Ga0075018_106246502 17Ga0068871_1009268471 18Ga0075521_102917921 19Ga0066659_105184672 20Ga0079220_108198512 21Ga0075425_1030747792 22Ga0075436_1002643473 23Ga0099829_109445522 24Ga0116214_10300255 25Ga0116222_12523482 26Ga0116218_11536051 27Ga0116110_12171262 28Ga0105855_12043902 29Ga0116217_107682192 30Ga0134063_101210302 31Ga0134062_107714091 32Ga0074044_109954041 33Ga0126376_121825262 34Ga0126376_131209142 35Ga0126378_111643291 36Ga0126378_122885951 37Ga0126381_1005160281 38Ga0137399_116481431 39Ga0137376_106967751 40Ga0137367_107612721 41Ga0137390_117995991 42Ga0137397_102319773 43Ga0137394_110183452 44Ga0137410_107104302 45Ga0134077_102282732 46Ga0181538_103813531 47Ga0163163_106599621 48Ga0157376_112966391 49Ga0167668_10901752 50Ga0137409_102521373 51Ga0132255_1012939451 52Ga0132255_1041729501 53Ga0134074_12604271 54Ga0187825_102437832 55Ga0187848_103938622 56Ga0187783_101442741 57Ga0187781_106608622 58Ga0187815_100878893 59Ga0187804_101189623 60Ga0187864_102760351 61Ga0187867_104538832 62Ga0187784_101193814 63Ga0187771_113876761 64Ga0187774_100360551 65Ga0187774_103071921 66Ga0187770_101651763 67Ga0066669_110167112 68Ga0066669_112926231 69Ga0182031_12498261 70Ga0193751_12066001 71Ga0210399_114975002 72Ga0210401_111479922 73Ga0210406_103474253 74Ga0210390_104411552 75Ga0210398_109615981 76Ga0126371_117133232 77Ga0222622_114585752 78Ga0207656_104201442 79Ga0207685_100034171 80Ga0207665_104291561 81Ga0209686_11394941 82Ga0209801_12498462 83Ga0209473_10106922 84Ga0209267_12123262 85Ga0209159_10569323 86Ga0209378_11072853 87Ga0209474_102184841 88Ga0209579_102208512 89Ga0209275_106345221 90Ga0209698_112854092 91Ga0222749_107231352 92Ga0307468_1001329003 93Ga0307475_110896511 94Ga0307473_101743141 95Ga0307473_112961692 96Ga0310917_111625092 97Ga0318520_107067702 98Ga0306926_114559471 99Ga0318545_101865352 100Ga0311301_103036375 101Ga0307471_1042393122 102Ga0335079_103895731 103Ga0335078_101416744 104Ga0335078_121156992 105Ga0335072_1001135114 106Ga0335076_100841471 107Ga0335077_101071655 108Ga0335077_110024751 109Ga0314871_023116_410_529 110Ga0334847_002818_2_112
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58. 1Ga0066680_101971521 2Ga0070708_1001655081 3Ga0070731_104533902 4Ga0070732_100407631 5Ga0066789_101141241 6Ga0075029_1001537493 7Ga0075018_106246502 8Ga0079220_108198512 9Ga0116222_12523482 10Ga0105855_12043902 11Ga0074044_109954041 12Ga0126378_122885951 13Ga0126381_1005160281 14Ga0187867_104538832 15Ga0187774_100360551 16Ga0066669_110167112 17Ga0182031_12498261 18Ga0207656_104201442 19Ga0209686_11394941
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40. 1Ga0066694_101566651 2Ga0066680_101971521 3Ga0070708_1001655081 4Ga0066789_101141241 5Ga0075018_106246502 6Ga0075425_1030747792 7Ga0099829_109445522 8Ga0105855_12043902 9Ga0126376_131209142 10Ga0126378_122885951 11Ga0126381_1005160281 12Ga0137367_107612721 13Ga0137397_102319773 14Ga0137394_110183452 15Ga0137410_107104302 16Ga0132255_1012939451 17Ga0187825_102437832 18Ga0187848_103938622 19Ga0187781_106608622 20Ga0187867_104538832 21Ga0187771_113876761 22Ga0187774_100360551 23Ga0182031_12498261 24Ga0193751_12066001 25Ga0210390_104411552 26Ga0210398_109615981 27Ga0222622_114585752 28Ga0207656_104201442 29Ga0209698_112854092 30Ga0222749_107231352 31Ga0306926_114559471 32Ga0335079_103895731 33Ga0335078_101416744 34Ga0335078_121156992 35Ga0335077_110024751
Powered by MSAViewer

⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.54% β-sheet: 0.00% Coil/Unstructured: 72.46%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00378	ECH_1	47.27
PF01144	CoA_trans	27.27
PF00285	Citrate_synt	1.82
PF09579	Spore_YtfJ	0.91
PF04909	Amidohydro_2	0.91
PF00581	Rhodanese	0.91
PF00111	Fer2	0.91
PF01694	Rhomboid	0.91
PF03745	DUF309	0.91
PF02897	Peptidase_S9_N	0.91

Showing 1 to 10 of 11 entries

Previous1 2Next

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1788	Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit	Lipid transport and metabolism [I]	27.27
COG2057	Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunit	Lipid transport and metabolism [I]	27.27
COG4670	Acyl CoA:acetate/3-ketoacid CoA transferase	Lipid transport and metabolism [I]	27.27
COG0372	Citrate synthase	Energy production and conversion [C]	1.82
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0807	GTP cyclohydrolase II	Coenzyme transport and metabolism [H]	0.91
COG1505	Prolyl endopeptidase PreP, S9A serine peptidase family	Amino acid transport and metabolism [E]	0.91
COG1547	Predicted metal-dependent hydrolase	Function unknown [S]	0.91
COG1770	Protease II	Amino acid transport and metabolism [E]	0.91

Showing 1 to 9 of 9 entries

Previous1Next

⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.91 %
Unclassified	root	N/A	9.09 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.91 %
Unclassified	root	N/A	9.09 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.91 %
Unclassified	root	N/A	9.09 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	10.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.55 %
Unclassified	root	N/A	9.09 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.45 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.73 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %
Unclassified	root	N/A	9.09 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.45 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.73 %
Unclassified	root	N/A	9.09 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.45 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.73 %
Unclassified	root	N/A	9.09 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.91 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	4.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.73 %
Unclassified	root	N/A	9.09 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.73 %
Unclassified	root	N/A	9.09 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	4.55 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.91 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	4.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.73 %
Unclassified	root	N/A	9.09 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	0.91 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005174\|Ga0066680_10197152	All Organisms → cellular organisms → Bacteria	1272	Open in IMG/M
3300005445\|Ga0070708_100165508	All Organisms → cellular organisms → Bacteria	2062	Open in IMG/M
3300005538\|Ga0070731_10453390	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300005540\|Ga0066697_10566413	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300005542\|Ga0070732_10040763	All Organisms → cellular organisms → Bacteria	2668	Open in IMG/M
3300005559\|Ga0066700_11086832	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005566\|Ga0066693_10339898	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005574\|Ga0066694_10156665	All Organisms → cellular organisms → Bacteria	1080	Open in IMG/M
3300005602\|Ga0070762_10865830	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005921\|Ga0070766_10971973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	583	Open in IMG/M

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.73%
Host-Associated	Host-Associated	7.27%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.82%
Plants	Host-Associated → Plants	7.27%
Terrestrial	Environmental → Terrestrial	80.91%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	7.27%
Peat	Environmental → Terrestrial → Peat	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.73%
Roots	Host-Associated → Plants → Roots	1.82%
Sediment	Environmental → Aquatic → Sediment	4.55%
Soil	Environmental → Terrestrial → Soil	80.00%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.27%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.45%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.27%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.27%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.73%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.91%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.73%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.91%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.64%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.73%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.73%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.91%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.55%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.18%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.45%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.18%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.64%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

⦗Top⦘

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066680_101971521	3300005174	Soil	AEDKKLLLDIISSEKKWIAPKEGGRDPLATIAEPRKSAINL*
Ga0070708_1001655081	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	KDKEVLLDIIRNEKKWIKEKELARDPLSTIAEPRKSAINL*
Ga0070731_104533902	3300005538	Surface Soil	VMPSADDKKLLLEIIANENKWIAEKEGARDPFSTIGEPRKSAINL*
Ga0066697_105664131	3300005540	Soil	TPEDKTLLLDIIRNEKKWIVAKEGGRDPLATIGEPRKSAINL*
Ga0070732_100407631	3300005542	Surface Soil	LLEIIANDKKWIAEKEGARDPFATIGEPRKSAINL*
Ga0066700_110868322	3300005559	Soil	LDIIANEKKWIAEKEGARDPFETIAEPRKSAINL*
Ga0066693_103398982	3300005566	Soil	FEAMPSAEDKKLLLEIIANEKNWIAEKEGARDPFETIGEPRKSAINL*
Ga0066694_101566651	3300005574	Soil	AEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL*
Ga0070762_108658301	3300005602	Soil	ADDKKLLLELIANNKHWIAEKEGARDPFLTIGEPRKSAINL*
Ga0070766_109719731	3300005921	Soil	ELLLDIIRNEKKWIKEKEGARDPLTTITEPRKSAINI*
Ga0066789_101141241	3300005994	Soil	LLDIIGMEKKWIVAKEGGRDPLETIAEPRKSAINL*
Ga0070717_101383014	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	KLLLDIIANEKKWIAEKQGARDPFETIAEPRKSAINL*
Ga0066656_109323741	3300006034	Soil	YMPSAEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL*
Ga0075029_1001537493	3300006052	Watersheds	HLAECLPSAADKALLLDIIHNEKKWIKEKEGARDPFATIGEPRKSAINL*
Ga0075030_1014655602	3300006162	Watersheds	DKELLLDILRNEKKWIKEKEGARDPFATIGEPRRSAINL*
Ga0075018_106246502	3300006172	Watersheds	IIGAEKKWIAPRIGGRDPLATIGEVRKNAINAEK*
Ga0068871_1009268471	3300006358	Miscanthus Rhizosphere	DKKLLLELIGNEKGWIAEKEGARDPFLTIGEPRKSAINL*
Ga0075521_102917921	3300006642	Arctic Peat Soil	LLDIIRNEKKWIKEKEGARDPLSTIGEPRKSAINI*
Ga0066659_105184672	3300006797	Soil	EFLPSAEDKKLLLEIIANEKKWIAEKEGARDPFETIAEPRKSAINL*
Ga0079220_108198512	3300006806	Agricultural Soil	AADKQLLVDIIANEKQWIAEKTGARDPFETIGQPRKNAINL*
Ga0075425_1030747792	3300006854	Populus Rhizosphere	YAQQLDDFLPTAADKQLLVDIIANEKQWIAEKTGARDPFETIGQPRKNAINL*
Ga0075436_1002643473	3300006914	Populus Rhizosphere	PTAGDKKLLLEIIANEKKWIAEKEGARDPFETIAEPRKSAINI*
Ga0099829_109445522	3300009038	Vadose Zone Soil	KEYMPTAEDRKLLLDIINNEKKWIVSKEGGRDPLATIAEPRKSAINL*
Ga0116214_10300255	3300009520	Peatlands Soil	LLDIIRNEKKWIKEKEGARDPLSTIAEPRKSAINI*
Ga0116222_12523482	3300009521	Peatlands Soil	LKETLASEKKWITPRTGARDPFETIAEPRKMAINV*
Ga0116218_11536051	3300009522	Peatlands Soil	SADKKLLKETLASEKKWITPRTGARDPFETIAEPRKMAINV*
Ga0116110_12171262	3300009643	Peatland	ELLLDIIRNEKKWIKEKTGARDPLSTIEEPRKSAINL*
Ga0105855_12043902	3300009649	Permafrost Soil	MPNAADKKLLMDIIGSEKKWIAPLMGGRHALVTIGEVRKKAI
Ga0116217_107682192	3300009700	Peatlands Soil	LLLDIIRNEKKWIKEKEGARDPLSTIAEPRKSAINI*
Ga0134063_101210302	3300010335	Grasslands Soil	MPSAADKKLLLDIIGTEKKWIAPKEGARDPFETIAEPRKSAINL*
Ga0134062_107714091	3300010337	Grasslands Soil	EEHLKEYMPSAADKKLLLDIIGTEKKWIAPKEGARDPFETIAEPRKSAINL*
Ga0074044_109954041	3300010343	Bog Forest Soil	WLPTAADKKLLKETLANEKKWITPRTGARDPFETIAEPRKMAINVP*
Ga0126376_121825262	3300010359	Tropical Forest Soil	DKKLLLEIIANEKKWIVEKEGARDPFETIAEPRKSAINI*
Ga0126376_131209142	3300010359	Tropical Forest Soil	LEIIANEKKWITEKEGTRDPLETIGEPRKSAINL*
Ga0126378_111643291	3300010361	Tropical Forest Soil	EDKKLLLEIIANEKNWIAPKEGARDPFETIAEPRKSAINL*
Ga0126378_122885951	3300010361	Tropical Forest Soil	MPTAADKKLLLDIIGSEKKWIAPRNARDPLLTIGEVRKNAINAVQ*
Ga0126381_1005160281	3300010376	Tropical Forest Soil	EWLPNADDKKLLLEVIANEKNWIAPRVGVRDPFETIGQPRKSAINI*
Ga0137399_116481431	3300012203	Vadose Zone Soil	LLLDIIRNEKKWIKEKEGARDPLSTIGEPRKQAINI*
Ga0137376_106967751	3300012208	Vadose Zone Soil	KILLLDIIRNEKKWIVAKEGGRDPLATIAEPRKSAINL*
Ga0137367_107612721	3300012353	Vadose Zone Soil	VLLDILRNEKKWIKEKEGARDPLATIGEPRKSAVNL*
Ga0137390_117995991	3300012363	Vadose Zone Soil	LDIIRNEKKWIKEKEGARDPLSTIGEPRKQAINI*
Ga0137397_102319773	3300012685	Vadose Zone Soil	FGEVMPTAEDKSVLLEIIANEKKWIVEKEGARDPFQTIGEPRKSAINL*
Ga0137394_110183452	3300012922	Vadose Zone Soil	EDRKLLLEIIANEKKWIAEKEGARDPFQTIGEPRKSAINL*
Ga0137410_107104302	3300012944	Vadose Zone Soil	TAEDKKLLLETIANEKNWIAEKEGARDPFSTIGEPRKSAINL*
Ga0134077_102282732	3300012972	Grasslands Soil	EQHLSKYMPSAEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL*
Ga0181538_103813531	3300014162	Bog	LDIIRNEKKWIKEKTGARDPLSTIEEPRKSAINL*
Ga0163163_106599621	3300014325	Switchgrass Rhizosphere	EHLESVMPTADDKKLLLELIANEKGWIAEKEGARDPFLTIGEPRKSAINL*
Ga0157376_112966391	3300014969	Miscanthus Rhizosphere	TADDKKLLLELIANEKGWIAEKEGARDPFLTIGEPRKSAINL*
Ga0167668_10901752	3300015193	Glacier Forefield Soil	LDIIRNEKKWIKEKAGARDPLSTITEPRKSAINI*
Ga0137409_102521373	3300015245	Vadose Zone Soil	PHFHEVMPTAEDRKLLLEIIANEKKWIAEKEGARDPFQTIGEPRKSAINL*
Ga0132255_1012939451	3300015374	Arabidopsis Rhizosphere	LDIIANEKKWIKEKEGARDPLSSIGEPRKSAINL*
Ga0132255_1041729501	3300015374	Arabidopsis Rhizosphere	TAEDKKLLLELIAYEKKWIAEKEGARDPFETIGEPRKSAINL*
Ga0134074_12604271	3300017657	Grasslands Soil	AEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Ga0187825_102437832	3300017930	Freshwater Sediment	DKKLLLEIIASEKKWIAEKEGARDPFATIGEPRRSAINL
Ga0187848_103938622	3300017935	Peatland	QDKALLLDIIRNEKKWIKGKEGARDPFATIAEPRRSAINL
Ga0187783_101442741	3300017970	Tropical Peatland	LLKETLATEKKWITPRTGARDPFETIAEPRKAAINVP
Ga0187781_106608622	3300017972	Tropical Peatland	LPSAKDKELLLDIIRNEKKWIKEKTGARDPFSTIAEPRKSAINL
Ga0187815_100878893	3300018001	Freshwater Sediment	LKETLANEKKWITPRTGARDPFETIAEPRKAAINVP
Ga0187804_101189623	3300018006	Freshwater Sediment	LLDIIRNEKKWIKEKEGARDPLSTIGEPRKSAVNL
Ga0187864_102760351	3300018022	Peatland	LLLDIIRNEKKWIKEKTGARDPLSTIEEPRKSAINL
Ga0187867_104538832	3300018033	Peatland	VREVLPGLDDRKLLLDTLSTEKKWIVAKEGGRDPLATISEPRRSAINL
Ga0187784_101193814	3300018062	Tropical Peatland	TAADKKLLKETLATEKKWITPRTGARDPFETIAEPRKAAINI
Ga0187771_113876761	3300018088	Tropical Peatland	PTAADKKLLKETIASEKKWITPRTGARDPFETIAEPRKAAINVP
Ga0187774_100360551	3300018089	Tropical Peatland	AEDKKHLLDLITNEKRWIAGKQGARDPFATIGEPRRSAINL
Ga0187774_103071921	3300018089	Tropical Peatland	YDRQVSEWLPTAADKKLLKETLANEKKWITPRTGARDPFETIAEPRRAAINV
Ga0187770_101651763	3300018090	Tropical Peatland	KLLKETLATEKKWITPRTGARDPFETIAEPRKAAINI
Ga0066669_110167112	3300018482	Grasslands Soil	EQHLSKYMPSAEDRRLLLAIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Ga0066669_112926231	3300018482	Grasslands Soil	FLPSAEDKKLLLEIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Ga0182031_12498261	3300019787	Bog	QQHCQENLPGAKDKELLLDIIRNEKKWIKEREEGARDPLSTISEPRKSAINI
Ga0193751_12066001	3300019888	Soil	ALLLDIIRNEKKWIKEKTGARDPLSTMGEPRKSAINI
Ga0210399_114975002	3300020581	Soil	LLLETIANEKHWIAEKEGARDPFLTIGEPRKSAINL
Ga0210401_111479922	3300020583	Soil	ELLLDIIRNEKKWIKEKAGARDPLSTISEPRKSAINL
Ga0210406_103474253	3300021168	Soil	LLLDIIRNEKKWIKEKEGARDPLSTIGEPRKQAINI
Ga0210390_104411552	3300021474	Soil	HFQEVMPSADDKKLLLEIIANENKWITEKEGARDPFSTIGEPRKSAINL
Ga0210398_109615981	3300021477	Soil	DQHLAEVLPSADDKKLLLELIANNKHWIAEKEGARDPFLTIGEPRKSAINL
Ga0126371_117133232	3300021560	Tropical Forest Soil	QFLPTAEDKKRLLEIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Ga0222622_114585752	3300022756	Groundwater Sediment	MPTAEDKTLLLDIIRNEKRWIVAKEGGRDPLATISEPRKSAINL
Ga0207656_104201442	3300025321	Corn Rhizosphere	LLLDIIASEPSWIVPKIGARDPFETITEPRRSAINL
Ga0207685_100034171	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MPTAEDKKLLLEIIANEKNWIAEKEGARDPFATIGEPRKSAINL
Ga0207665_104291561	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LLDIIRNEKKWIVAKEGGRDPLATIGEPRKSAINL
Ga0209686_11394941	3300026315	Soil	EYMPTPEDKTLLLDIIRNEKKWIVAKEGGRDPLATIGEPRKSAINL
Ga0209801_12498462	3300026326	Soil	YMPSAADKKLLLDIIGTEKKWIAPKEGARDPFETIAEPRKSAINL
Ga0209473_10106922	3300026330	Soil	LKDYMPSAEDKKLLLDIIANEKRWIAAKEGARDPFETIAEPRKSAINL
Ga0209267_12123262	3300026331	Soil	QHLSEYMPSAEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Ga0209159_10569323	3300026343	Soil	DKKLLLDIIGTEKKWIAPKEGARDPFETIAEPRKSAINL
Ga0209378_11072853	3300026528	Soil	KYMPSAEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Ga0209474_102184841	3300026550	Soil	EQHLSEYMPSAEDKKLLLDIIANEKKWIAEKEGARDPFETIAEPRKSAINL
Ga0209579_102208512	3300027869	Surface Soil	VMPSADDKKLLLEIIANENKWIAEKEGARDPFSTIGEPRKSAINL
Ga0209275_106345221	3300027884	Soil	ADDKKLLLELIANNKHWIAEKEGARDPFLTIGEPRKSAINL
Ga0209698_112854092	3300027911	Watersheds	KDKELLLDILRNEKKWIKEKEGARDPFATIGEPRRSAINL
Ga0222749_107231352	3300029636	Soil	TAEDKKLLLEIIANDKKWVAEKEGTRDPFATIGEPRKSAINL
Ga0307468_1001329003	3300031740	Hardwood Forest Soil	KKLLLEIIVNEKKWIAEKEGARDPFATIGEPRKSAINL
Ga0307475_110896511	3300031754	Hardwood Forest Soil	EDKKLLLEIIANEKRWIAEKEGARDPFETIGEPRKSAINL
Ga0307473_101743141	3300031820	Hardwood Forest Soil	TLLLDIIRNEEKWIVAKEGGRDPLATISEPRKSAINL
Ga0307473_112961692	3300031820	Hardwood Forest Soil	QLEIIANEKKWIAEKEGARDPFATIGEPRKSAINL
Ga0310917_111625092	3300031833	Soil	LLLELIANEKHWIAEKEGARDPFLTIGEPRKSAINL
Ga0318520_107067702	3300031897	Soil	KLLLEIIANEKKWIAEKEGSRDPFATIGEPRKSAINL
Ga0306926_114559471	3300031954	Soil	LLLEIILNEKNWIVAKENARDPLATIAEPRKSAINL
Ga0318545_101865352	3300032042	Soil	HFAEAMPTAEDKKLLLEIIANEKKWIAEKEGSRDPFATIGEPRKSAINL
Ga0311301_103036375	3300032160	Peatlands Soil	AGEWLPTAADKKLLKETLANEKKWITPRTGARDPFETIAEPRKMAINV
Ga0307471_1042393122	3300032180	Hardwood Forest Soil	EEHLKEYMPSAADKKLLLDIIGTEKKWIAPKEGARDPFETIAEPRKSAINL
Ga0335079_103895731	3300032783	Soil	RAYREHTAECLPSAADKAHLLDIIRNEKSWIKEKEGARDPFATIGEPRRSAINL
Ga0335078_101416744	3300032805	Soil	EVLPSAKDKASLLDVLRNEKKWIKEKQGARDPFATIGEPRRSAINL
Ga0335078_121156992	3300032805	Soil	RLLPTAEDKKLLLEIIANEKQWIAPKVGARDPFETIGEPRKSAINL
Ga0335072_1001135114	3300032898	Soil	VLPSAKDKALLLDVLRNEKKWIKEKEGARDPFATIGEPRRSAINL
Ga0335076_100841471	3300032955	Soil	DKALLLDVLRNEKKWIKEKEGARDPFATIGEPRRSAINL
Ga0335077_101071655	3300033158	Soil	EDKAYERQVSEWLPTAADKKLLKETLATEKKWITPRTGARDPFETIAEPRKGAINVS
Ga0335077_110024751	3300033158	Soil	LKEALPTAADKQLLLDIISTEKKWIAEKEGARDPFETIGEPRKSAINL
Ga0314871_023116_410_529	3300033809	Peatland	DKKLLLEIIANEKKWIAEKEGARDPFATIGEPRKSAINL
Ga0334847_002818_2_112	3300033826	Soil	LLLDIIRNEKKWIKEKEGARDPLATIGEPRKSAINI

⦗Top⦘

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.