Basic Information | |
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Family ID | F087627 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 110 |
Average Sequence Length | 48 residues |
Representative Sequence | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDPQSVPNVA |
Number of Associated Samples | 95 |
Number of Associated Scaffolds | 110 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 67.27 % |
% of genes near scaffold ends (potentially truncated) | 42.73 % |
% of genes from short scaffolds (< 2000 bps) | 81.82 % |
Associated GOLD sequencing projects | 91 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (94.545 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.182 % of family members) |
Environment Ontology (ENVO) | Unclassified (24.545 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (49.091 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 0.00% β-sheet: 12.24% Coil/Unstructured: 87.76% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Natural And Restored Wetlands Soil Terrestrial Soil Tropical Forest Soil Soil Agricultural Soil Soil Soil Natural And Restored Wetlands Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Host-Associated Arabidopsis Rhizosphere Miscanthus Rhizosphere Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
ICCgaii200_06102862 | 2228664021 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNVA |
JGI11615J12901_103613432 | 3300000953 | Soil | NMSAEIGGYQDDFDERGSKPEEVVRTSDDPQSVPNVA* |
F14TB_1044994431 | 3300001431 | Soil | MSAEIGGYQDDFDERGSKPEEVVRSSDDPQSVPNVA* |
Ga0055468_100090102 | 3300003993 | Natural And Restored Wetlands | MATWTTPTYTEINMSAEIGGYQDDFDERTPKPEDAIRPGDDPQSIPNEA* |
Ga0055467_100158972 | 3300003996 | Natural And Restored Wetlands | MATWTTPTYTEISMSAEIGGYQDDFDERTPKPEDAIRPGDDPQSIPNEA* |
Ga0058859_113096491 | 3300004798 | Host-Associated | EINMSAEIGGYQDDFDERGSKPEEVVRTDDDPQSVPNVA* |
Ga0065712_103121942 | 3300005290 | Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTSDDPQSVPNVA* |
Ga0070676_101151792 | 3300005328 | Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNVA* |
Ga0066388_1018394962 | 3300005332 | Tropical Forest Soil | MITWTTPTYTEINMSAEIGGYQDEFDERGSKPEDTIRTSEAPQSVPKEA* |
Ga0070682_1007951061 | 3300005337 | Corn Rhizosphere | VSRARTIPPSAIPLELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTSDDPQSVPNVA* |
Ga0070661_1014128181 | 3300005344 | Corn Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDLQSVPNVA* |
Ga0070668_1003164482 | 3300005347 | Switchgrass Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTGDDSQSVPNVA* |
Ga0070673_1023563891 | 3300005364 | Switchgrass Rhizosphere | MATWTTPTYSEINMSAEIGGYQDDFDERIPKPDDAIRMNDAPQSFPKEA* |
Ga0070701_101566582 | 3300005438 | Corn, Switchgrass And Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA* |
Ga0070708_1009098711 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDD |
Ga0070681_101098992 | 3300005458 | Corn Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTSDDPQSVPNVA* |
Ga0070693_1001122102 | 3300005547 | Corn, Switchgrass And Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTDDDPQSVPNVA* |
Ga0066905_1001870121 | 3300005713 | Tropical Forest Soil | MSTWTTPTYTEINMSAEIGGYQDEFDERGSKPEDTIRTSEAPQSVPKEA* |
Ga0066903_1070275782 | 3300005764 | Tropical Forest Soil | MITWTTPTYTEINMSAEIGGYQDEFDERGLKPEDTIRTSEAPQSVPKEA* |
Ga0081455_1000490712 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MNWEKPAYREVNMSAEIGGYQDDFDERGSKPEDTIRTGDAPQSVPKEA* |
Ga0081455_104888131 | 3300005937 | Tabebuia Heterophylla Rhizosphere | MATWTTPTYTEINMSAEIGGYQDDFDERIPKPDDAIRTNDAPQSLPKEA* |
Ga0075417_103825742 | 3300006049 | Populus Rhizosphere | LELARGVFMVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA* |
Ga0075417_104722531 | 3300006049 | Populus Rhizosphere | ELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERKSKPEDGIRKGDDSHSVPNEA* |
Ga0075432_100213741 | 3300006058 | Populus Rhizosphere | ELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNVA* |
Ga0070716_1013276442 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | MITWTTPTYTEINMSAEIGGYQDDFDERNAKPEEAIRTVDDPQSVPNVA* |
Ga0068871_1018338942 | 3300006358 | Miscanthus Rhizosphere | MSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA* |
Ga0079221_102957282 | 3300006804 | Agricultural Soil | MNWEKPEYREVNMSAEIGGYQDDFDERTPKPDDTIRTADASRSVPTEA* |
Ga0079220_113140061 | 3300006806 | Agricultural Soil | MIWTTPTYIEINMSAEIGGYQDDFDERNAKPEEVVRTVDDPQSVPNVA* |
Ga0075428_1008008922 | 3300006844 | Populus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDPQSVPNVA* |
Ga0075433_104433853 | 3300006852 | Populus Rhizosphere | EINMSAEIGGYQDDFDERGSKPEEVVRTGDDPQSVPNVA* |
Ga0075433_119284701 | 3300006852 | Populus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEV |
Ga0075425_1004058122 | 3300006854 | Populus Rhizosphere | MATWTTPTYSEINMSAEIGGYQDDFDERIPKPEDAIRTNDAPQSLPKEA* |
Ga0075425_1005523892 | 3300006854 | Populus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTADDPQSVPNVA* |
Ga0075425_1011504832 | 3300006854 | Populus Rhizosphere | MATWTTPTYTEINMSAEIGGYQDDFDERKSKPEDGIRKGDDSHSVPNEA* |
Ga0075425_1028865381 | 3300006854 | Populus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRT |
Ga0075434_1001256113 | 3300006871 | Populus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSNPEEVVRTGDDPQSVPNVA* |
Ga0075434_1003380052 | 3300006871 | Populus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRASDDPQSVPNVA* |
Ga0075426_108536812 | 3300006903 | Populus Rhizosphere | MATWTTPTYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNVA* |
Ga0079219_104023782 | 3300006954 | Agricultural Soil | MKTWTTPAYTEINMSAEIGGYQDDFDERAPRPDDAIRRSEAPQSQPNEA* |
Ga0079219_125300692 | 3300006954 | Agricultural Soil | MATWTTPSYSEINMSAEIGGYQDDFDERIPKPDDAIRTNNAPQSLPKEA* |
Ga0111539_102103411 | 3300009094 | Populus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDP |
Ga0126376_105596162 | 3300010359 | Tropical Forest Soil | EINMSAEIGGYQDEFDERGSQHEDTIRTSEAPQSVPKEA* |
Ga0126377_117207492 | 3300010362 | Tropical Forest Soil | MATWTTPTYTEINMSAEIGGYQDDFDERTPKPDNAIRTNDAPQSVPKEA* |
Ga0134125_115206482 | 3300010371 | Terrestrial Soil | MATWTTPTYTEINMSAEIGGYQDDFDERIPKPDDAIRMNDAPQSLPKEA* |
Ga0134125_118573111 | 3300010371 | Terrestrial Soil | TTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA* |
Ga0134125_120313272 | 3300010371 | Terrestrial Soil | MVTWTTPAYTEINMSAEIGGYLDDFEERGSKPEEVVRTGDDSQSVPNVA* |
Ga0134128_118200372 | 3300010373 | Terrestrial Soil | MVIWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDD |
Ga0126383_121894621 | 3300010398 | Tropical Forest Soil | MITWTTPTYTEINMSAEIGGYQDEFDERGSQPEDTIRTSEAPQSVPKEA* |
Ga0134121_120036232 | 3300010401 | Terrestrial Soil | FMFTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA* |
Ga0157300_10406411 | 3300012884 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVR |
Ga0157288_100030451 | 3300012901 | Soil | VFIVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA* |
Ga0157295_103988071 | 3300012906 | Soil | VELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNVA* |
Ga0157290_100280451 | 3300012909 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVV |
Ga0157302_103738802 | 3300012915 | Soil | YTEINMSAEIGGYQDDFDERIPKPDDAIRMNDAPQSLPKEA* |
Ga0126375_101707422 | 3300012948 | Tropical Forest Soil | MITWTTPTYTEINMSAEIGGYQDEFDERGAKPEDTIRMNEAPQSVPKEA* |
Ga0164298_106725762 | 3300012955 | Soil | MIWTTPAYTEINMSAEIGGYQDDFDERNSKPEEAIRTGEHPQSVPNEA* |
Ga0164299_107459911 | 3300012958 | Soil | MATWTTPTYTEINMSAEIGGYQDDFDERIPKPDDAIRMNDAPQSFPKEA* |
Ga0164301_106031872 | 3300012960 | Soil | MIWTTPAYTEINMSAEIGGYQDDFDERNSKPEEAIRTGDDPQSVPNEA* |
Ga0164302_100328853 | 3300012961 | Soil | MITWTTPAYTEINMSAEIGGYQDDFDERNSKPEEAIRTVDDPQSVPNVA* |
Ga0164302_111348742 | 3300012961 | Soil | EINMSAEIGGYQDDFEERAPRPEDAIRPDDDPQSLPNEA* |
Ga0164309_101793572 | 3300012984 | Soil | MIWTTPAYTEINMSAEIGGYQDDFDERNSKPEEAIRTGDDPRSVPNEA* |
Ga0164304_117881871 | 3300012986 | Soil | MIWTTPAYTEINMSAEIGGYQDDFDERNPKPEEAIRTGEGPQSFPNEA* |
Ga0164307_100822533 | 3300012987 | Soil | MIWTTPAYTEINMSAEIGGYQDDFDERNSKPEEAIRTGEGPQSVPNEA* |
Ga0164306_101912872 | 3300012988 | Soil | MIWTTPAYTEINMSAEIGGYQDDFDERNSKPEEAIRTGDDPQSVPNKA* |
Ga0164305_113833702 | 3300012989 | Soil | MITWTTPAYTEINMSAEIGGYQDDFDERNSKPEEAIRTGDDPQSLPNKA* |
Ga0075311_10454241 | 3300014259 | Natural And Restored Wetlands | EISMSAEIGGYQDDFDERTPKPEDAIRPGDDPQSIPNEA* |
Ga0075309_10377312 | 3300014268 | Natural And Restored Wetlands | MATWTTPTYTEINMSAEIGGYQDDFDERIPKPEDAIRPGDDPQSIPNEA* |
Ga0075331_10500551 | 3300014310 | Natural And Restored Wetlands | MATWTTPTYTEINMSAEIGGYQDDFDERLPKPEDAIRPGDDPQSIPNEA* |
Ga0163163_125598611 | 3300014325 | Switchgrass Rhizosphere | AYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVLNVA* |
Ga0157377_100473804 | 3300014745 | Miscanthus Rhizosphere | VELARGVLMVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA* |
Ga0173483_100026311 | 3300015077 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEQVVRTGDDSQSVPNVA* |
Ga0132258_104626042 | 3300015371 | Arabidopsis Rhizosphere | MITWTTPTYTEINMSAEIGGYQDDFDERNSKPEEAIRTVDDPQSVPNVA* |
Ga0132256_1033201191 | 3300015372 | Arabidopsis Rhizosphere | REHVEIPMATWTTPTYSEINMSAEIGGYQDDFDERIPKPDDAIRTNNAPQSLPKEA* |
Ga0132257_1005215291 | 3300015373 | Arabidopsis Rhizosphere | TEINMSAEIGGYQDDFDERGSKPEEVVRTGDDRQSVPNVA* |
Ga0173482_102049432 | 3300019361 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTSDDPQSVPNVA |
Ga0173479_102124212 | 3300019362 | Soil | MVTWPTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDPQSVPNVA |
Ga0247753_10478541 | 3300022892 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA |
Ga0210087_10821642 | 3300025559 | Natural And Restored Wetlands | MATWTTPTYTEISMSAEIGGYQDDFDERTPKPEDAIRPGDDPQSIPNEA |
Ga0210114_11200952 | 3300025795 | Natural And Restored Wetlands | ATWTTPTYTEINMSAEIGGYQDDFDERTPKPEDAIRPGDDPQSIPNEA |
Ga0210113_10558522 | 3300025796 | Natural And Restored Wetlands | MATWTTPTYTEINMSAEIGGYQDDFDERTPKPEDAIRPGDDPQSIPNEA |
Ga0207682_100115963 | 3300025893 | Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDLQSVPNVA |
Ga0207688_100442712 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDPQSVPNVA |
Ga0207654_101640982 | 3300025911 | Corn Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVLNVA |
Ga0207662_100716285 | 3300025918 | Switchgrass Rhizosphere | EINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA |
Ga0207686_111468911 | 3300025934 | Miscanthus Rhizosphere | TIPHSTIPIELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNVA |
Ga0207691_100687725 | 3300025940 | Miscanthus Rhizosphere | NMSAEIGGYQDEFEERVPKRDDAIHTVDAPPSVADEA |
Ga0207691_104610521 | 3300025940 | Miscanthus Rhizosphere | IPPSAIPLELARGVFMVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA |
Ga0207691_104610531 | 3300025940 | Miscanthus Rhizosphere | IPPSAIPLELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNVA |
Ga0207711_120560081 | 3300025941 | Switchgrass Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTGDDSQSVPNVA |
Ga0207689_100898882 | 3300025942 | Miscanthus Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTDDDPQSVPNVA |
Ga0207661_108853972 | 3300025944 | Corn Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTSDDPQSVPNV |
Ga0207661_118050132 | 3300025944 | Corn Rhizosphere | ARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTSDDPQSVPNVA |
Ga0208654_10504421 | 3300026062 | Natural And Restored Wetlands | EINMSAEIGGYQDDFDERTPKPEDAIRPGDDPQSIPNEA |
Ga0207675_1001184771 | 3300026118 | Switchgrass Rhizosphere | AMKWETPAFVEINMSAEIGGYKHDFAERGSKPEEIVRTSDDPQSVPNVA |
Ga0207683_104644312 | 3300026121 | Miscanthus Rhizosphere | MATWTTPTYTEINMSAEIGGYQDDFDERIPKPDDAIRMNDAPQSLPKEA |
Ga0209973_10317692 | 3300027252 | Arabidopsis Thaliana Rhizosphere | DPLELARGVFMVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA |
Ga0209969_10003375 | 3300027360 | Arabidopsis Thaliana Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTSDDPQSVPNVA |
Ga0209967_10022332 | 3300027364 | Arabidopsis Thaliana Rhizosphere | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTGDDPQSVPNVA |
Ga0210000_10310261 | 3300027462 | Arabidopsis Thaliana Rhizosphere | STIPIELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTGDDSQSVPNV |
Ga0209995_100033912 | 3300027471 | Arabidopsis Thaliana Rhizosphere | PPSAIPVELARGVFMVTWTTPAYTEINMSAEIGGYQDDFDERGSKPEEVVRTSDDPQSVPNVA |
Ga0209814_102695752 | 3300027873 | Populus Rhizosphere | MATWTTPTYTEINMSAEIGGYQDDFDERKSKPEDGIRKGDDSHSVPNEA |
Ga0247828_103989001 | 3300028587 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRASDDP |
Ga0310900_114106911 | 3300031908 | Soil | MATWTTPTYTEINMSAEIGGYQDDFDERIPKPDDAIRMN |
Ga0310885_100552411 | 3300031943 | Soil | SRARTIPPSAIPLELARGVFMVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA |
Ga0310903_107113951 | 3300032000 | Soil | ARGVFMVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRTDDDPQSVPNVA |
Ga0310897_104208781 | 3300032003 | Soil | MATWTTPTYTEINMSAEIGGYQDDFDERIPKPDDAIRTNDAPQSLPKEA |
Ga0310906_104111702 | 3300032013 | Soil | MVTWTTPAYTEINMSAEIGGYQDDFEERGSKPEEVVRASDDPQSVPNVA |
Ga0310899_105639942 | 3300032017 | Soil | INMSAEIGGYQDDFDERIPKPDDSIRTNDAPQSLPKEA |
Ga0310810_102138535 | 3300033412 | Soil | GDLMKTWTTPAYTEINMSAEIGGYQDDFDERAPRPDDAIRRSEAPQSQPNEA |
Ga0310810_110962491 | 3300033412 | Soil | MATWTTPTYSEINMSAEIGGYQDDFDERIPKPEDAIRTNDAPQSLPKEA |
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