NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087614

Metagenome Family F087614

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087614
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 48 residues
Representative Sequence RTALLFAALAFTGMVFVKLPLLVVLLGLAPVSIAVARIASARAP
Number of Associated Samples 96
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.67 %
% of genes near scaffold ends (potentially truncated) 90.91 %
% of genes from short scaffolds (< 2000 bps) 85.45 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.455 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(35.455 % of family members)
Environment Ontology (ENVO) Unclassified
(30.909 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.273 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.
1JGIcombinedJ26739_1004827323
2JGIcombinedJ26739_1010843201
3JGIcombinedJ26739_1015330832
4JGIcombinedJ51221_100390133
5Ga0062385_105601872
6Ga0062386_1001213335
7Ga0062386_1015010102
8Ga0070708_1013320301
9Ga0070706_1014936112
10Ga0066700_107295651
11Ga0066700_108641862
12Ga0066699_102679613
13Ga0066708_104101491
14Ga0070763_107410702
15Ga0066903_1028566222
16Ga0066652_1015276771
17Ga0070716_1017874752
18Ga0075425_1013813271
19Ga0099791_106847811
20Ga0099795_100223481
21Ga0074044_100885101
22Ga0126378_121852782
23Ga0126381_1016486191
24Ga0136449_1042940432
25Ga0126383_115183171
26Ga0126383_125334431
27Ga0137362_111523762
28Ga0137380_111983091
29Ga0137360_100953741
30Ga0137390_117908131
31Ga0137398_100144104
32Ga0137398_106564802
33Ga0137395_107459472
34Ga0137395_108098342
35Ga0137394_105085021
36Ga0181538_102695663
37Ga0137412_106930093
38Ga0182041_101927151
39Ga0182035_104068743
40Ga0182039_105431291
41Ga0182039_111316502
42Ga0187770_109096692
43Ga0210407_101817334
44Ga0210403_100467702
45Ga0210403_102263133
46Ga0210403_111794112
47Ga0210401_106629043
48Ga0210400_104558371
49Ga0210405_108291302
50Ga0210408_109936512
51Ga0210388_108041062
52Ga0213873_100638711
53Ga0210386_114135092
54Ga0213878_102387191
55Ga0187846_100177545
56Ga0210410_112853711
57Ga0126371_112220263
58Ga0212123_105977801
59Ga0209171_102678611
60Ga0257157_10118923
61Ga0257161_10987851
62Ga0209059_10834351
63Ga0207949_10243902
64Ga0209626_11436952
65Ga0209328_101829581
66Ga0209038_100070294
67Ga0209448_101661053
68Ga0209701_103041073
69Ga0209275_102505462
70Ga0209488_102880681
71Ga0302226_104204711
72Ga0308309_100511974
73Ga0311340_109272762
74Ga0170834_1099886422
75Ga0170834_1137383432
76Ga0170824_1174850642
77Ga0318541_104305512
78Ga0318573_102300703
79Ga0318555_104212181
80Ga0307474_114507471
81Ga0306917_108345521
82Ga0318501_100242505
83Ga0306918_103425273
84Ga0307477_100069839
85Ga0318521_101075141
86Ga0318547_103860453
87Ga0318529_100325994
88Ga0318557_104809491
89Ga0318523_103255961
90Ga0307473_110401432
91Ga0318567_104672512
92Ga0310917_104149401
93Ga0318511_105497182
94Ga0318536_103205901
95Ga0310912_103785021
96Ga0310910_110417051
97Ga0310909_108577183
98Ga0318569_102370131
99Ga0318507_100060681
100Ga0310911_100715491
101Ga0310911_108107752
102Ga0318559_101624232
103Ga0318532_101176782
104Ga0318533_108283531
105Ga0318525_106528241
106Ga0306920_1013585391
107Ga0306920_1015984963
108Ga0334722_109045271
109Ga0310914_100390401
110Ga0310914_107724553
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 56.94%    β-sheet: 0.00%    Coil/Unstructured: 43.06%
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510152025303540RTALLFAALAFTGMVFVKLPLLVVLLGLAPVSIAVARIASARAPExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
95.5%4.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Sediment
Bog Forest Soil
Bog
Iron-Sulfur Acid Spring
Vadose Zone Soil
Tropical Forest Soil
Bulk Soil
Peatlands Soil
Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Tropical Peatland
Bog Forest Soil
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Palsa
Biofilm
Populus Rhizosphere
Rhizosphere
4.5%12.7%4.5%5.5%35.5%7.3%6.4%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10048273233300002245Forest SoilVLFAALAFAGIVFTKAPLLVVLLGLAPISIAVAAVETGGAR*
JGIcombinedJ26739_10108432013300002245Forest SoilTGLRLLMPHRSRRTALLFAGLAFAGMAFTRLPLLMVLLALAPVSIAVAGLESARAQ*
JGIcombinedJ26739_10153308323300002245Forest SoilGVRLLMPHLGRPVAVLFAALAFAGIAFTGAPLFVVLLGLAPLSIAAAAVETGRAR*
JGIcombinedJ51221_1003901333300003505Forest SoilMPHRRRRTTLLFAGLAFAGMAFTKLPLLIVLLALAPISIAVTGLENART*
Ga0062385_1056018723300004080Bog Forest SoilGLLIGTGLRLLMPHRSRRTALLFAGLAFAGMAFTRLPLPMVLLALAPISIAVTGLQGTRAR*
Ga0062386_10012133353300004152Bog Forest SoilALLFAALAFAGMAFVKLPLLVVLFGLAPISIAVAGIANARAS*
Ga0062386_10150101023300004152Bog Forest SoilALLFAALAFAGMAFVKLPLLLVLLGLAPISIAVAGIANARAS*
Ga0070708_10133203013300005445Corn, Switchgrass And Miscanthus RhizosphereGLLIATGVRLLIPHLNRPVAVLFAALAFAGVVFTKAPLLVVLLGLAPISIAVAAVETGGAR*
Ga0070706_10149361123300005467Corn, Switchgrass And Miscanthus RhizosphereRPVAVLFAALAFAGVVFTKAPLLVVLLGLAPLSIAVAAVETGRAR*
Ga0066700_1072956513300005559SoilHRSRRTALLFAALAFAGMALTKLPLLFVLLGLAPASIAVAGIVSARAP*
Ga0066700_1086418623300005559SoilLMIATGIRLLLPHRSRRTALLFAALAFAGMALTRLPLLVVLLGLAPLSIAVAGLASTRAS
Ga0066699_1026796133300005561SoilAALAFGLMAFGKLPLLFVLLGLAPLSIAVAGIARAR*
Ga0066708_1041014913300005576SoilLAFAGMAFTRLPLPIVLLALAPISIAVARIEDARAR*
Ga0070763_1074107023300005610SoilRPVAVLFAALAFAGIVFTKAPLLVVLLGLAPLSIAVAAVESGRAQ*
Ga0066903_10285662223300005764Tropical Forest SoilMAVVFAMLAFVLMAVVKLPLLVVLIGLAPLSIAAAGFQIARAR*
Ga0066652_10152767713300006046SoilAVLFAALAFGLMAFGKLPLLFVLLGLAPLSIAVAGIARAR*
Ga0070716_10178747523300006173Corn, Switchgrass And Miscanthus RhizosphereIGTGLRLLTPLRSRRTALLFAGLAFAGMAFTSLPLPIVLLALAPISIAVAGLESARAR*
Ga0075425_10138132713300006854Populus RhizosphereRGRPGAWFFAAAAFAGIVVFKLPLMVVLLGLAPLSIAAARLEPAR*
Ga0099791_1068478113300007255Vadose Zone SoilLPHRSRRTALLFAALAFAGMALTKLPLLFVLLGLAPVSIAVAGIASTRAS*
Ga0099795_1002234813300007788Vadose Zone SoilSLGFLLMALAKLPLLIVLIGLAPLSIAAAGFQTARAR*
Ga0074044_1008851013300010343Bog Forest SoilRALLFAALAFAGMAFVKLPLLVVLFGLAPISIAVAGIANARAS*
Ga0126378_1218527823300010361Tropical Forest SoilLLFAAFAFTGMVFFKLPLLVVLLGLAPLSIAVAGVASARAS*
Ga0126381_10164861913300010376Tropical Forest SoilIGTGLRLLLPHRTPPTAILLAALAFAGLVLTTLPPPVVLVGLAPLSIAVTFLESARPR*
Ga0136449_10429404323300010379Peatlands SoilLIATGLRLLTPHRARRTALLFAALAFAGMAFTHLPLLIVLLGLAPLSIGVAGVESARAR*
Ga0126383_1151831713300010398Tropical Forest SoilALLFAALAFTGMVVAKLPLLVVLFGLAPVSIAIAGIASPRAP*
Ga0126383_1253344313300010398Tropical Forest SoilAAAAGLMIATGIRLLLPHRNRRTTLLFSGLAFTGMAFVKLPLLIVLLGLAPVSVAVAGVASAKAP*
Ga0137362_1115237623300012205Vadose Zone SoilAILFAALAFGLMAFGKLPLLFVLLCLAPLSIAVVGIARAR*
Ga0137380_1119830913300012206Vadose Zone SoilTGIRLLMPHRRHRTALLFAACSFAGMAFTKLPLLVVLFGLAPLSIAATALESARAP*
Ga0137360_1009537413300012361Vadose Zone SoilFAALAFIRMALTKLPLLFVLLGLAPASIAVAGIAGARAP*
Ga0137390_1179081313300012363Vadose Zone SoilWTALLFAALAFAGMALTKLPLLLVLLGLAPLSIAVTGIASSRAP*
Ga0137398_1001441043300012683Vadose Zone SoilGVRLLMPHLGRPVAVLFAALAFAGIVFTALPLLVVLLGLAPLSIAVAAVQTGRV*
Ga0137398_1065648023300012683Vadose Zone SoilALLFAGLAFAGMAFTRLPLTIVLLSLAPISIAVAGRESARIR*
Ga0137395_1074594723300012917Vadose Zone SoilGSRIATGIRLLMHHRGRRTALLFAAPAFAGMALTKLPLLIVLLGLAPLSITVTGIASARAP*
Ga0137395_1080983423300012917Vadose Zone SoilLLFAALAFAGMALTKLPLLFVLLGLAPVSIAVAGIASTRAS*
Ga0137394_1050850213300012922Vadose Zone SoilTGIRLLLPHRSRRTALLFVALAFAGMALTKLPLLFVLLGLAPVSIAVAGIASTRAS*
Ga0181538_1026956633300014162BogHPVALLFAALAFAGMVWAKLPLLVVLLGLAPFSIAGAAITGAARR*
Ga0137412_1069300933300015242Vadose Zone SoilRTALLFAALAFTGMVFVKLPLLVVLLGLAPVSIAVARIASARAP*
Ga0182041_1019271513300016294SoilATGIRLLMPYRRRQTALLFAALAFTGMVVAKLPLLVVLLGLAPVSIAVDSITSPRARTS
Ga0182035_1040687433300016341SoilALLFAALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0182039_1054312913300016422SoilHRSRRTALLFTALAFTGMAFVKLPLLVVLLGLAPLSIAVGGIASARAS
Ga0182039_1113165023300016422SoilLMPHRGRWTTLLFAALAFAGMALTRLPLLVVLLGLAPLSIAVAGIESARA
Ga0187770_1090966923300018090Tropical PeatlandLMIATGIRLLKSHRSHRMALLFAALAFTGMSFVKLPLLIVLLGLAPVSIAITGVANARAS
Ga0210407_1018173343300020579SoilALAFAGMAVVKLPLLVVLLGLAPLSIAIAGITSKRAS
Ga0210403_1004677023300020580SoilMPHRRRRTTLLFAGLAFAGMAFTKLPLLIVLLALAPISIAVTGLENART
Ga0210403_1022631333300020580SoilAAGLMIATGIRLLMPQRSRQTALLFAALAFTGMVVAKLPLLVVLFGLAPVSIAIAGIASPRVR
Ga0210403_1117941123300020580SoilAALVFAALAFGLMTFSKLPLLVVLLGLIPLNIVVTGIGNARVP
Ga0210401_1066290433300020583SoilRAALLFAGLAFAGMAFTRLPLPMVLLALAPVSIAVAGFESARAR
Ga0210400_1045583713300021170SoilRRTALLFAGLAFAGMAFTRLPLPIVLLALAPISIAVAGLESARAR
Ga0210405_1082913023300021171SoilLAFTGMAVVKLPLLVVLLGLAPVSIAVARIASAKAP
Ga0210408_1099365123300021178SoilPHRSRRTALLFAGLAFAGMAFTRLPLPIVLLALAPISIAVAGLESARAR
Ga0210388_1080410623300021181SoilHLNRPVAVLFAALAFAGVVFTKAPLLVVLLGLAPLSIAVAAVETGRAR
Ga0213873_1006387113300021358RhizosphereLIGTGLRLLAPLRSRPTALLFAALAFAGMAFTRLPLPAVLVALAPLSIAVTVVEGARPQ
Ga0210386_1141350923300021406SoilLLFAGLAFAGMAFTRLPLPMVLLALAPVSIAVAGFESARAR
Ga0213878_1023871913300021444Bulk SoilPPALLFAALAFAGMAFTKLPLLIVLLGLAPLSIAVAGFANARAT
Ga0187846_1001775453300021476BiofilmMIATGIRLLMPHRRRQTALLFAALAFTGMVVAKLPLLVVLLGLAPLSIAVASITSPRART
Ga0210410_1128537113300021479SoilGLLIGTGLRLLTPHRSRRTALLFAGLAFAGMAFTRLPLTIVLLSLAPISIAVARRESARA
Ga0126371_1122202633300021560Tropical Forest SoilLLMPHRSHLTALLTSALAFTGMTVVKLPLLVVLLGLTPLSIALAGIVSKRAS
Ga0212123_1059778013300022557Iron-Sulfur Acid SpringHIGRPIAVLFAALAFAGSVFTGLPLLVVLFGLAPLSIAVAAVQSGKAR
Ga0209171_1026786113300025320Iron-Sulfur Acid SpringRPASVLFVALACGLMAFSKLPLLAILFGLAPLSIAVAAIGGARAR
Ga0257157_101189233300026496SoilAGLLIATGGRLLMPHLGRPVAVLFAALAFAGVVFTELPLLVVLLGLAPLSIAVAAVQTGR
Ga0257161_109878513300026508SoilGRPVAVLFAALAFAGVVFTELPLLVVLLGLAPLSIAVAAVQKGRA
Ga0209059_108343513300026527SoilLLPHRRRQTALLFAGLAFAGMAFTKLPLPIVLLILAPVSIAVAGLESARAR
Ga0207949_102439023300026999Forest SoilSRRAALLFAGLAFAGMAFTRLPLPMVLLALAPVSIAVAGFESARAR
Ga0209626_114369523300027684Forest SoilMIATGIRLLLPHRSRRTALLFAALAFAGMALTKLPLLFVLLGLAPASIAVAGIASARAR
Ga0209328_1018295813300027727Forest SoilVLFAALAFAGIVFTKAPLLVVLLGLAPISIAVAAVETGGAR
Ga0209038_1000702943300027737Bog Forest SoilAGLLIGTGLRLLTPHRSHRTALLFAGLAFAGMAFTRLPLMMVLLALAPISIAVAGFENARAR
Ga0209448_1016610533300027783Bog Forest SoilSRRTVLLFTALAFAGMAFTGLPLPIVLLALAPISIAVAGLESARAR
Ga0209701_1030410733300027862Vadose Zone SoilLIATGIRLLMPHRGRRTALLFAAFAFTGMAFTKLPLLIVLFGLAPLSIAATALESARPR
Ga0209275_1025054623300027884SoilMPHRRRRTTLLFAGLAFAGMAFTRLPLPMVLLALAPVSIAVAGFESARAR
Ga0209488_1028806813300027903Vadose Zone SoilTALLFAALAFAGIALTKLPLLFVLLGLAPVSIAVAGIASTRAS
Ga0302226_1042047113300028801PalsaDPPAIFFAALAFAGLAIAKFPLLLVLLTLAPLSIAVTVFGRTTPR
Ga0308309_1005119743300028906SoilGLAFAGMAFTRLPLPMVLLALAPVSIAVAGFESARAR
Ga0311340_1092727623300029943PalsaVALLFAALAFAGMMLDKLPLLVVLLGLAPFSIAGAAVAGAARR
Ga0170834_10998864223300031057Forest SoilFAGLAFAGMAFTRLPLPIVLLALAPVSIAVAGFESARAR
Ga0170834_11373834323300031057Forest SoilLMIATGIRLLMPHRSRRTALLFAALAFTGMTVAKLPLLFVLLGLAPVSIAVAGIASARAS
Ga0170824_11748506423300031231Forest SoilGLRLLMPHRGRRTALLFAGLAFAGMAFTRLPLVAVLIGLAPLSILVTALESPRPH
Ga0318541_1043055123300031545SoilSALAFTGMTVVKLPLLVVLLGLAPLSIALAGVASKRAS
Ga0318573_1023007033300031564SoilRRQTALLFAALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0318555_1042121813300031640SoilAALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0307474_1145074713300031718Hardwood Forest SoilFRPAAVLFAALAWAGIVVARWPLLIVLLGLAPLSIAGAALSRGRQR
Ga0306917_1083455213300031719SoilATGIRLLMPHRGRWSALLFAACAFSGMAFTKLPLLVVLFGLAPFSIAATAIERAGTR
Ga0318501_1002425053300031736SoilIRLLMPHRNRRAALLFAALAFVGLAFTKLSLLVVLLGLAPISIAVAGIATARAS
Ga0306918_1034252733300031744SoilMPHHRRQTALLFAALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0307477_1000698393300031753Hardwood Forest SoilIATGIRLLMPQRSRQTALLFAALAFTGMVVAKLPLLVVLFGLAPVSIAIAGIASPRVR
Ga0318521_1010751413300031770SoilQTALLFAALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0318547_1038604533300031781SoilAALAFTGIVVAKLPLLVVLFGLAPVSIAIAGITSPRVR
Ga0318529_1003259943300031792SoilALAFVGLAFTKLSLLVVLLGLAPISIAVAGIATARAS
Ga0318557_1048094913300031795SoilALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0318523_1032559613300031798SoilMPHRSRRTALLFTALAFTGMAFVKLPLLVVLLGLAPLSIAVAGIASARAS
Ga0307473_1104014323300031820Hardwood Forest SoilAALLFAALAFAGIILAKLPLLTVLVGLVPLSIAVAGVMSPKAE
Ga0318567_1046725123300031821SoilAFIGMVVAKLPLLVVLFGLAPVSIAIAGITSPRAR
Ga0310917_1041494013300031833SoilLMPHRSRRTALLFTALAFTGMAFVKLPLLVVLLGLAPLSIAVAGIASARAS
Ga0318511_1054971823300031845SoilALAFTGMVVAKLPLLVVLFGLAPVSIAIAGIPSPRVR
Ga0318536_1032059013300031893SoilLIPYRSRRTALLFAALAFTGMAFVKLPLLVVLLGLAPLSIAVAGVASARAS
Ga0310912_1037850213300031941SoilTALLFAALAFIGIVVAKLPLLVVLFGLAPVSIAIAGITSPRAR
Ga0310910_1104170513300031946SoilFAALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0310909_1085771833300031947SoilMIAIGLRLLMAHSSRRTALLFAALAFAGMALTKLPPLVVLLALAPISIAVAGFTTARVV
Ga0318569_1023701313300032010SoilNRRAALLFAALAFVGLAFTKLSLLVVLLGLAPISIAVAGIATARAS
Ga0318507_1000606813300032025SoilPHRNRRAALLFAALAFVGLAFTKLSLLVVLLGLAPISIAVAGIATARAS
Ga0310911_1007154913300032035SoilTGIRLLMPHHRRQTALLFAALAFTGMVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0310911_1081077523300032035SoilRAALLFTALAFAGMALTGLRLPIVLLALAPISIAVAGLESAR
Ga0318559_1016242323300032039SoilYRSRQTALLFAALAFTGMVVAKLPLLVVLFGLAPVSIAIAGIATPRAP
Ga0318532_1011767823300032051SoilRSRQTALLFAALAFTGIVVAKLPLLVVLFGLAPVSIAIAGITSPRVR
Ga0318533_1082835313300032059SoilAHRGRRTALISAAVAFSGMAIAKLPLLVVLLGLAPISIAAAGIASTRA
Ga0318525_1065282413300032089SoilGLMIATGIRLLMPQRSRQTALLFAALAFTGIVVAKLPLLVVLFGLAPVSIAIAGITSPRV
Ga0306920_10135853913300032261SoilATGIRLLMPHRSRRTALLTSALAFTGMTVVKLPLLVVLLGLAPLSIALAGVASKRAS
Ga0306920_10159849633300032261SoilGIRLLIAHRGRRTALISAAVAFSGMAIAKLPLLVVLLGLAPISIAAAGIASTRA
Ga0334722_1090452713300033233SedimentHRRRFAAILFAALAFGLMAFSKLPLLVVLLGLAPLSIVVAGIENARAR
Ga0310914_1003904013300033289SoilFTGIVVAKLPLLVVLLGLAPVSIAVASITSPRARTS
Ga0310914_1077245533300033289SoilLIPHRTHPTAILLAALAFAGMVLTRLPLPVVLVGLAPLSIAVTFLESARPR


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