Metagenome / Metatranscriptome Family F087610

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087610
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	46 residues
Representative Sequence	ALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKPHRRVANE
Number of Associated Samples	97
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.91 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.364 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (34.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (35.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.29% β-sheet: 0.00% Coil/Unstructured: 65.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00285	Citrate_synt	27.27
PF08570	DUF1761	5.45
PF12681	Glyoxalase_2	2.73
PF12833	HTH_18	2.73
PF07045	DUF1330	1.82
PF00903	Glyoxalase	1.82
PF06983	3-dmu-9_3-mt	1.82
PF01738	DLH	0.91
PF07786	HGSNAT_cat	0.91
PF03966	Trm112p	0.91
PF01401	Peptidase_M2	0.91
PF00216	Bac_DNA_binding	0.91
PF03449	GreA_GreB_N	0.91
PF00092	VWA	0.91
PF00501	AMP-binding	0.91
PF02627	CMD	0.91
PF00486	Trans_reg_C	0.91
PF00550	PP-binding	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0372	Citrate synthase	Energy production and conversion [C]	27.27
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	1.82
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	1.82
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	1.82
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.91
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.91
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.91
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.91
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.36 %
Unclassified	root	N/A	13.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.36 %
Unclassified	root	N/A	13.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.36 %
Unclassified	root	N/A	13.64 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	35.45 %
Unclassified	root	N/A	13.64 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.55 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	20.91 %
Unclassified	root	N/A	13.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.45 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	4.55 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	2.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	19.09 %
Unclassified	root	N/A	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4.55 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	2.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19.09 %
Unclassified	root	N/A	13.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	2.73 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	10.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	2.73 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.64 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.45 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2.73 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001131\|JGI12631J13338_1000587	All Organisms → cellular organisms → Bacteria	10928	Open in IMG/M
3300001154\|JGI12636J13339_1040747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	590	Open in IMG/M
3300001593\|JGI12635J15846_10743439	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300001661\|JGI12053J15887_10184996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1069	Open in IMG/M
3300004092\|Ga0062389_101347312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	899	Open in IMG/M
3300004635\|Ga0062388_102979522	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005167\|Ga0066672_10599004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	714	Open in IMG/M
3300005536\|Ga0070697_100449359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1122	Open in IMG/M
3300005602\|Ga0070762_10452391	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300005610\|Ga0070763_10417947	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300005712\|Ga0070764_10333193	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300005938\|Ga0066795_10262169	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300006052\|Ga0075029_100042899	All Organisms → cellular organisms → Bacteria	2601	Open in IMG/M
3300006052\|Ga0075029_100056768	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300006102\|Ga0075015_100339472	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300006102\|Ga0075015_100898810	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300006162\|Ga0075030_100610262	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300006174\|Ga0075014_100057168	All Organisms → cellular organisms → Bacteria	1697	Open in IMG/M
3300009523\|Ga0116221_1160055	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	979	Open in IMG/M
3300009630\|Ga0116114_1023235	All Organisms → cellular organisms → Bacteria → Acidobacteria	1857	Open in IMG/M
3300009639\|Ga0116122_1021830	All Organisms → cellular organisms → Bacteria	2293	Open in IMG/M
3300009644\|Ga0116121_1147334	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300009672\|Ga0116215_1101966	Not Available	1285	Open in IMG/M
3300009683\|Ga0116224_10446167	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	616	Open in IMG/M
3300009698\|Ga0116216_10607287	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	659	Open in IMG/M
3300009700\|Ga0116217_10919686	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300010343\|Ga0074044_10001278	All Organisms → cellular organisms → Bacteria → Acidobacteria	23025	Open in IMG/M
3300010880\|Ga0126350_12235082	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300012205\|Ga0137362_11657582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300012362\|Ga0137361_11172379	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300012362\|Ga0137361_11248541	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	667	Open in IMG/M
3300012363\|Ga0137390_10551642	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
3300012923\|Ga0137359_10396205	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300012927\|Ga0137416_10380576	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300012927\|Ga0137416_11176543	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	690	Open in IMG/M
3300014155\|Ga0181524_10102267	Not Available	1597	Open in IMG/M
3300014155\|Ga0181524_10345114	Not Available	664	Open in IMG/M
3300014156\|Ga0181518_10052865	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2431	Open in IMG/M
3300014167\|Ga0181528_10120677	All Organisms → cellular organisms → Bacteria → Acidobacteria	1422	Open in IMG/M
3300014169\|Ga0181531_10657877	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	650	Open in IMG/M
3300014200\|Ga0181526_10977622	Not Available	532	Open in IMG/M
3300014491\|Ga0182014_10056075	All Organisms → cellular organisms → Bacteria	2660	Open in IMG/M
3300014638\|Ga0181536_10466154	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300017823\|Ga0187818_10060533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1629	Open in IMG/M
3300017823\|Ga0187818_10224773	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300017925\|Ga0187856_1033894	All Organisms → cellular organisms → Bacteria	2392	Open in IMG/M
3300017929\|Ga0187849_1310705	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300017934\|Ga0187803_10226182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	739	Open in IMG/M
3300017937\|Ga0187809_10239096	Not Available	654	Open in IMG/M
3300017940\|Ga0187853_10537784	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300017941\|Ga0187850_10472875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300017948\|Ga0187847_10003284	All Organisms → cellular organisms → Bacteria	12460	Open in IMG/M
3300017955\|Ga0187817_10232222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300017961\|Ga0187778_11059937	Not Available	563	Open in IMG/M
3300018006\|Ga0187804_10354374	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	645	Open in IMG/M
3300018006\|Ga0187804_10371842	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300018014\|Ga0187860_1006239	All Organisms → cellular organisms → Bacteria	8465	Open in IMG/M
3300018015\|Ga0187866_1248394	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	639	Open in IMG/M
3300018015\|Ga0187866_1312170	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300018020\|Ga0187861_10256647	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300018038\|Ga0187855_10803558	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	549	Open in IMG/M
3300018038\|Ga0187855_10838589	Not Available	536	Open in IMG/M
3300018040\|Ga0187862_10073182	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2431	Open in IMG/M
3300018040\|Ga0187862_10202523	Not Available	1302	Open in IMG/M
3300018042\|Ga0187871_10702899	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300019786\|Ga0182025_1222323	All Organisms → cellular organisms → Bacteria	1908	Open in IMG/M
3300019787\|Ga0182031_1419438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2723	Open in IMG/M
3300019787\|Ga0182031_1469988	Not Available	1577	Open in IMG/M
3300021088\|Ga0210404_10889591	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300021479\|Ga0210410_11383136	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	596	Open in IMG/M
3300021559\|Ga0210409_11742231	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300025444\|Ga0208189_1014004	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1841	Open in IMG/M
3300025507\|Ga0208188_1081976	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300025910\|Ga0207684_11302169	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300026502\|Ga0255350_1036726	Not Available	1228	Open in IMG/M
3300027432\|Ga0209421_1137347	Not Available	505	Open in IMG/M
3300027676\|Ga0209333_1001569	All Organisms → cellular organisms → Bacteria	10965	Open in IMG/M
3300027737\|Ga0209038_10177411	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300027855\|Ga0209693_10318992	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300027898\|Ga0209067_10660269	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300027908\|Ga0209006_10266438	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300027915\|Ga0209069_11021118	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300028800\|Ga0265338_10632955	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300028868\|Ga0302163_10210399	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	541	Open in IMG/M
3300028906\|Ga0308309_10079643	All Organisms → cellular organisms → Bacteria	2472	Open in IMG/M
3300028906\|Ga0308309_11501885	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	575	Open in IMG/M
3300029911\|Ga0311361_11333599	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300029951\|Ga0311371_11472998	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	760	Open in IMG/M
3300030011\|Ga0302270_10194642	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1177	Open in IMG/M
3300030020\|Ga0311344_10535591	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1025	Open in IMG/M
3300030041\|Ga0302274_10409263	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300030047\|Ga0302286_10154864	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300030051\|Ga0302195_10293054	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300030054\|Ga0302182_10060825	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1697	Open in IMG/M
3300030580\|Ga0311355_11137186	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	693	Open in IMG/M
3300030743\|Ga0265461_11837014	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300030838\|Ga0311335_11416884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	501	Open in IMG/M
3300031234\|Ga0302325_10660144	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1519	Open in IMG/M
3300031236\|Ga0302324_101757902	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	790	Open in IMG/M
3300031239\|Ga0265328_10079121	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300031258\|Ga0302318_10048358	Not Available	1704	Open in IMG/M
3300031258\|Ga0302318_10483245	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300031708\|Ga0310686_102568582	Not Available	1621	Open in IMG/M
3300032160\|Ga0311301_10518780	Not Available	1758	Open in IMG/M
3300032174\|Ga0307470_11362398	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300032954\|Ga0335083_11445247	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300033158\|Ga0335077_10892473	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	896	Open in IMG/M
3300033402\|Ga0326728_10235079	Not Available	1774	Open in IMG/M
3300033982\|Ga0371487_0050087	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2442	Open in IMG/M
3300034199\|Ga0370514_171440	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.18%
Aquatic	Environmental → Aquatic	40.00%
Plants	Host-Associated → Plants	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.82%
Freshwater	Environmental → Aquatic → Freshwater	32.73%
Peat	Environmental → Terrestrial → Peat	16.36%
Sediment	Environmental → Aquatic → Sediment	7.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.82%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	32.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.09%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.36%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.27%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.55%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.55%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.73%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	6.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.36%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.36%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	6.36%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.45%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	4.55%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.73%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	2.73%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.91%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.91%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.91%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001154	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017941	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025444	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026502	Peat soil microbial communities from Stordalen Mire, Sweden - H.B.S.T-25.r1	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030011	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030041	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N2_1	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300030051	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_2	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031239	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG	Host-Associated	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M
3300034199	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12631J13338_100058712	3300001131	Forest Soil	GQPATLNPALKKLGSAIQLNEEDIPQVTAIFARCLAIKPHRRVANE*
JGI12636J13339_10407473	3300001154	Forest Soil	EWQQVVELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVANE*
JGI12635J15846_107434392	3300001593	Forest Soil	WQQVVELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVANE*
JGI12053J15887_101849963	3300001661	Forest Soil	QVVELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPNRRVANE*
Ga0062389_1013473123	3300004092	Bog Forest Soil	NPALKKLGSAIRLTEEEIPQVSAIFARCLAVKPHRRVANE*
Ga0062388_1029795222	3300004635	Bog Forest Soil	VELTGTQPAPLNAALKKLGSAIRLNEGEIPQVSAIFARCLAVRPHRRVANE*
Ga0066672_105990043	3300005167	Soil	THSQPAALNAALKKLGSAIRLNEEEIPQVDAIFARCLAVKPRRRVANE*
Ga0070697_1004493593	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	AALNAALKKLGSAIRLNEEEIPQVAAIFARCLAVRPHRRVANE*
Ga0070762_104523913	3300005602	Soil	PQPATLNPALKKLGSAIRLTEDEVPQISAIFARCLAVKPHRRVANE*
Ga0070763_104179471	3300005610	Soil	KLGSAIRLTEDEIPQVSAIFARCLVVKPHRRVANE*
Ga0070764_103331932	3300005712	Soil	HGDPVALNQALKKLGSAIRLKDDDIPAVSAIFARCLKPSRSVANE*
Ga0066795_102621691	3300005938	Soil	NAALKKLGSAIQLNEAEIPQVAAIFARCLAVKSHRRVAHE*
Ga0075029_1000428994	3300006052	Watersheds	EGQPAALNAALKKLGSAIQLKEDQIPEVSAIFARCLKPSRRAANE*
Ga0075029_1000567685	3300006052	Watersheds	APLNAALKKLGSAIRLNEEEILQVSAIFARCLAVKPHRRVANE*
Ga0075015_1003394721	3300006102	Watersheds	PPALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRAANE*
Ga0075015_1008988102	3300006102	Watersheds	KKLGSAVQLNEEEIPQISAIFARCLAQKPRRHAASE*
Ga0075030_1006102621	3300006162	Watersheds	LTHAQPAALNAALKKLGSAIQLNEVEIPQVSAIFARCLAVKSHRRVANE*
Ga0075014_1000571681	3300006174	Watersheds	AQPAALNAALKKLGSAIRLNEEEILQVSAIFARCLAVKPHRRAANE*
Ga0116221_11600551	3300009523	Peatlands Soil	AALKKLGSAIRLTEEEIPQVAAIFARCLAVKSHRRVANE*
Ga0116114_10232351	3300009630	Peatland	ALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE*
Ga0116122_10218304	3300009639	Peatland	KKLGSAIQLNEEEIPQVAAIFARCLAVKSHRRVANE*
Ga0116121_11473342	3300009644	Peatland	LKKLGSAIQLTEEEIPQVSAIFARCLAVKSHRRVGTE*
Ga0116215_11019661	3300009672	Peatlands Soil	EWQQVLEVTHGHPAALNAALKKLGSAIQLTEEEIPQVSAIFARCLAVKSHRRVANE*
Ga0116224_104461673	3300009683	Peatlands Soil	KKLGSAIRLNEEDIPQVSAVFARCLAVKPHRRVANE*
Ga0116216_106072873	3300009698	Peatlands Soil	LSELTHAQPAALNAALKKLGSAIQLTEEEIPQVAAIFARCLAVKSHRRVANE*
Ga0116217_109196861	3300009700	Peatlands Soil	REWQQVLEVTHGHPAALNAALKKLGSAIQLTEEEIPQVSAIFARCLAVKSHRRVANE*
Ga0074044_100012781	3300010343	Bog Forest Soil	ALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKPHRRVANE*
Ga0126350_122350821	3300010880	Boreal Forest Soil	LTGTQPAALNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVANE*
Ga0137362_116575821	3300012205	Vadose Zone Soil	AREWQQLVDLTQAQPAALNAALKKLGSAIRLNEEEIPQVAAIFARCLAVKPRRRVANE*
Ga0137361_111723792	3300012362	Vadose Zone Soil	VDLTQAQPAALNAALKKLGSAIRLNEEEIPQVAAIFARCLAVRPHRRVANE*
Ga0137361_112485411	3300012362	Vadose Zone Soil	TQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVANE*
Ga0137390_105516421	3300012363	Vadose Zone Soil	VVELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPPRRVANE*
Ga0137359_103962051	3300012923	Vadose Zone Soil	QVVELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLVVRPHRRVANE*
Ga0137416_103805764	3300012927	Vadose Zone Soil	NAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVANE*
Ga0137416_111765431	3300012927	Vadose Zone Soil	LTGTQPAPLNAALKKLGSAIRLTEDEIPQVAAIFARCLAVRPHRRVANE*
Ga0181524_101022671	3300014155	Bog	QLVELTQSKPAALNAALKKLGSAIQLNEEEIPKVSAIFARCLAVKSHRRVANE*
Ga0181524_103451142	3300014155	Bog	REWQQLSELTHAQPAALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE*
Ga0181518_100528651	3300014156	Bog	EWQQIVELTGAQPAPLNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE*
Ga0181528_101206773	3300014167	Bog	WQKVVELSAGQPPALNAALKKLGSAIQLKEDQIAEVSAIFARCLKPGRKAANE*
Ga0181531_106578771	3300014169	Bog	ELTGTDPTPLNAALKKLGSAIRLDEDEIPQVSAIFARCLAIKSHRRVANE*
Ga0181526_109776222	3300014200	Bog	PALNAALKKLGSAIQLDEEEIPLVSAIFARCLAVKPHKRLANE*
Ga0182014_100560754	3300014491	Bog	LGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE*
Ga0181536_104661541	3300014638	Bog	ALKKLGSAIQLTDEEIPQVSAIFARCLAVKSHRRVANE*
Ga0187818_100605333	3300017823	Freshwater Sediment	SELTHAQPAALNAALKKLGSAIQLTEEDIPQVAAIFARCLAVKSHRRVANE
Ga0187818_102247732	3300017823	Freshwater Sediment	LNAALKKLGSAIQLTEEQIPQVSAIFARCLAVKSHRRVANE
Ga0187856_10338944	3300017925	Peatland	KKLGSAIQLNEEEIPQVAAIFARCLAVKSHRRVANE
Ga0187849_13107053	3300017929	Peatland	THAQPAALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE
Ga0187803_102261821	3300017934	Freshwater Sediment	ELTQGQPAGLNAALKKLGGAVTLKEEEIAQVSAIFARYLSIKPYRKVANDQ
Ga0187809_102390962	3300017937	Freshwater Sediment	LTHGDPAALNAALKKLGSAIRLKEDDIPAVSAVFARCLKPSRRAAHE
Ga0187853_105377842	3300017940	Peatland	LKKLGSGIRLNEEEIPQVSAIFARCLAVKPHRRVAGE
Ga0187850_104728751	3300017941	Peatland	LLERTQSQPAVLNAALKKLGSAIRLNEEEIPQVTAIFARCLAVKPRRRVASE
Ga0187847_1000328414	3300017948	Peatland	QQLVELTEGQPPALNAALKRLGSAIQLKEDQIPAVSAVFARCLKPSRKAANE
Ga0187817_102322221	3300017955	Freshwater Sediment	AREWQLLAELTQGQPATLNAALKKLGSAVKLNEEEIPQISAIFARCVGQKPRRHAANE
Ga0187778_110599371	3300017961	Tropical Peatland	WQKVLELTEGQVPALNAALRKLGSAIQLKEDEIPEVSAIFARCLGVKPPRKAANE
Ga0187804_103543743	3300018006	Freshwater Sediment	NAALKKLGSAIQLHEGEIPQVAAIFARCLAVKWHRRVANE
Ga0187804_103718421	3300018006	Freshwater Sediment	TEGQPPALNAALKKLGSAIQLKEDEIPEVSAIFARCLKPPRRAANE
Ga0187860_100623914	3300018014	Peatland	LNAALKKLGSAIQLTDEEIPQVSAIFARCLAVKSHRRVANE
Ga0187866_12483943	3300018015	Peatland	LTGTQPAALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE
Ga0187866_13121702	3300018015	Peatland	VSELTHAQPAALNAALKKLGSAIQLNEEEIPQVAAIFARCLAVKSHRRVAE
Ga0187861_102566471	3300018020	Peatland	KKLGSAIQLNEEEIPKVSAIFARCLAVKSHRRVANE
Ga0187855_108035581	3300018038	Peatland	ALKKLGSAIRLTEAEIPQVSAIFARCLAVKPPRRIANE
Ga0187855_108385891	3300018038	Peatland	PPALNAALKRLGSAIQLKEDQIPAVSAVFARCLKPSRKAANE
Ga0187862_100731821	3300018040	Peatland	EWQQIVELTGAQPAPLNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE
Ga0187862_102025231	3300018040	Peatland	LNAALKKLGSAIRLNDEEIPQVSAIFARCLAVKPPRRPAGE
Ga0187871_107028991	3300018042	Peatland	ELAGSQAATLNPALKKLGSAIRLTEEDIPQVSAIFARCLAVRPHRRVANE
Ga0182025_12223231	3300019786	Permafrost	VAANSGIDGTQPAPLNAALKKLGSAIRLNEEQIPEVSAIFARCLAVKPHRRAANE
Ga0182031_14194381	3300019787	Bog	LTHAQPAALNAALKKLGSAIRLNDEEIPQVSAIFARCLA
Ga0182031_14699884	3300019787	Bog	QPAALNAALKKLGSAIRLNDEEIPQVSAIFARCLAVKPPRRPAGE
Ga0210404_108895911	3300021088	Soil	VELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVANE
Ga0210410_113831363	3300021479	Soil	PLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVAND
Ga0210409_117422312	3300021559	Soil	REWQQVVELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVAND
Ga0208189_10140041	3300025444	Peatland	ALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE
Ga0208188_10819761	3300025507	Peatland	LNAALKKLGSAIQLTDEEIPQVSAIFARCLAVKSHRRVSNE
Ga0207684_113021693	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	KLGSAIRLTEEEIPQVAAIFARCLAVKPRRRAANE
Ga0255350_10367262	3300026502	Soil	KLGSAIRLNDEEIPQVSAIFARCLAVKPPRRPAGE
Ga0209421_11373471	3300027432	Forest Soil	EITAGDPPSLNAALKKLGSAIRLKDDEIPAVSAIFARCLRPPRRVANE
Ga0209333_10015691	3300027676	Forest Soil	AQPATLNPALKKLGSAIQLNEEDIPQVTAIFARCLAIKPHRRVANE
Ga0209038_101774111	3300027737	Bog Forest Soil	TGPQPAALNAALKKLGGAIRLNEEEIPQVSAIFARCLAVKPHRRVANE
Ga0209693_103189923	3300027855	Soil	KLGSAIRLTEDEIPQVSAIFARCLVVKPHRRVANE
Ga0209067_106602691	3300027898	Watersheds	QPAALNAALKKLGSAIQLKEDQIPEVSAIFARCLKPSRRAANE
Ga0209006_102664384	3300027908	Forest Soil	SALNPALKKLGAAIRLTEEEIPQISAIFARCLTVKPHRKAANE
Ga0209069_110211181	3300027915	Watersheds	LKKLGSAIQLSEEEIPQVSAIFARCLAVKTHKRVANE
Ga0265338_106329551	3300028800	Rhizosphere	QPAALNAALKKLGSAIRLKDEEIPEVSAIFARCLAVKPSRRAANE
Ga0302163_102103992	3300028868	Fen	REWQRVLDITAGQPAALNAALKKLGSAIQLKEAEIPEVSAVFARCLAVKPRKAANE
Ga0308309_100796435	3300028906	Soil	VVELTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVRPHRRVAND
Ga0308309_115018851	3300028906	Soil	VELTGAQPAALNPALKKLGSAIRLTEEEIPQVSAIFARCLVVKPHRRVANE
Ga0311361_113335991	3300029911	Bog	AGTEPVALNAALKKLGSAIRLNEEEIPQVSAVFARCLAIKPHRRVASE
Ga0311371_114729982	3300029951	Palsa	REWQQLAELTGTQPGPLNAALKKLGSAIRLNEEEIPQVSAIFARCLSVKPHRRAANE
Ga0302270_101946421	3300030011	Bog	LNPALKKLGSAVRLTEAEIPQVSAIFARCLAVKPHRRAANE
Ga0311344_105355913	3300030020	Bog	NPALKKLGSAIRLTEADIPQVSAIFARCLAVKPPRRVANE
Ga0302274_104092631	3300030041	Bog	EWQQLLELAGTQPATLNPALKKLGSAIRLTEADIPQVSAIFARCLAVKPPRRVANE
Ga0302286_101548642	3300030047	Fen	ALNAALKKLGSAIQLKEAEIPEVSAVFARCLAVKPRKAANE
Ga0302195_102930541	3300030051	Bog	AREWQQLLDLAGAQPVTLNPALKKLGSAIRLTEAEIPQVSAIFARCLAVKPPRRIANE
Ga0302182_100608251	3300030054	Palsa	QPAALNPALKKLGSAIRLDEEQIPEVSAIFARCLAVKPHRKVANE
Ga0311355_111371862	3300030580	Palsa	TQPGPLNAALKKLGSAIRLNEEEIPQVSAIFARCLSVKPHRRAANE
Ga0265461_118370142	3300030743	Soil	PLNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKPHRRVANE
Ga0311335_114168842	3300030838	Fen	AQPVPLNAALKKLGSAIRLTAEEIPQVSAIFARCLAVKPHRRVANE
Ga0302325_106601441	3300031234	Palsa	LNAALKKLGSAIRLDEEEIPQVSAIFARCLAIKSHRRVANE
Ga0302324_1017579021	3300031236	Palsa	LLELTGTQPAALNPALKKLGSAIRLNEEQIPEVSAIFARCLAVKPHRKVANE
Ga0265328_100791214	3300031239	Rhizosphere	RVVELTGGQPAPLNAALKKLGSAIQLKEDQIPEISAVFARCLKSPRHAANE
Ga0302318_100483582	3300031258	Bog	THAQPAALNAALKKLGSAIRLNDEDIPQVSAIFARCLAVKPPRRPAGE
Ga0302318_104832451	3300031258	Bog	AGAQPVTLNPALKKLGSAIRLTEAEIPQVSAIFARCLAVKPPRRIANE
Ga0310686_1025685821	3300031708	Soil	MTHGDPTALNQALKKLGSAIRLKEDEIPAVSAIFARCLKPSRKVSNE
Ga0311301_105187801	3300032160	Peatlands Soil	PLNAALRKLGSAIQLKEDEIPAISAIFARCLGAKPPRKAANE
Ga0307470_113623982	3300032174	Hardwood Forest Soil	QVVEMTGTQPAPLNAALKKLGSAIRLTEEEIPQVAAIFARCLAVKPHRRVANE
Ga0335083_114452472	3300032954	Soil	PSAFNGALKKLGSAIRLKEDDIPAVSAVFARCLKPPRKAANE
Ga0335077_108924733	3300033158	Soil	EWQKVVELTEGHVPALNAALKKLGAAIQLTENQVPEISAIFARCLGTRTSRRAANE
Ga0326728_102350792	3300033402	Peat Soil	GQPAALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKSHRRVANE
Ga0371487_0050087_1_174	3300033982	Peat Soil	REWQQLSELTHAQPAALNAALKKLGSAIRLNEEEIPQVSAIFARCLAVKPPRRVANE
Ga0370514_171440_2_142	3300034199	Untreated Peat Soil	AQPVTLNPALKKLGSAIRLTEAEIPQVSAIFARCLAVKPPRRIANE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087610

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences