Metagenome / Metatranscriptome Family F087605

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087605
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	47 residues
Representative Sequence	ASRNGNDALVQRLLKAGASTRLRNKDHLSAADVAAARSFSAIADLLKSA
Number of Associated Samples	100
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.45 %
% of genes near scaffold ends (potentially truncated)	94.55 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (82.727 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (36.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.75% β-sheet: 0.00% Coil/Unstructured: 53.25%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07730	HisKA_3	5.45
PF05721	PhyH	4.55
PF02518	HATPase_c	3.64
PF00873	ACR_tran	2.73
PF00023	Ank	2.73
PF16658	RF3_C	2.73
PF00196	GerE	1.82
PF13857	Ank_5	1.82
PF12796	Ank_2	1.82
PF14522	Cytochrome_C7	1.82
PF16350	FAO_M	0.91
PF05157	T2SSE_N	0.91
PF14026	DUF4242	0.91
PF05649	Peptidase_M13_N	0.91
PF10387	DUF2442	0.91
PF05036	SPOR	0.91
PF00593	TonB_dep_Rec	0.91
PF01571	GCV_T	0.91
PF00005	ABC_tran	0.91
PF08669	GCV_T_C	0.91
PF13701	DDE_Tnp_1_4	0.91
PF16576	HlyD_D23	0.91
PF00072	Response_reg	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	5.45
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	5.45
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	5.45
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	5.45
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.55
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.73 %
Unclassified	root	N/A	17.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.73 %
Unclassified	root	N/A	17.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.73 %
Unclassified	root	N/A	17.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	76.36 %
Unclassified	root	N/A	17.27 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	50.00 %
Unclassified	root	N/A	17.27 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	31.82 %
Unclassified	root	N/A	17.27 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	4.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
Neisseriales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales	0.91 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.91 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	31.82 %
Unclassified	root	N/A	17.27 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	1.82 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.82 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.91 %
Chromobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae	0.91 %
Thioalkalispiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Thioalkalispiraceae	0.91 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	31.82 %
Unclassified	root	N/A	17.27 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.82 %
Aquitalea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Aquitalea	0.91 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.91 %
Rudaea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea	0.91 %
Thiohalophilus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Thioalkalispiraceae → Thiohalophilus	0.91 %
Achromobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	31.82 %
Unclassified	root	N/A	17.27 %
Xanthomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1.82 %
Rudaea cellulosilytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	0.91 %
Thiohalophilus thiocyanatoxydans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Thioalkalispiraceae → Thiohalophilus → Thiohalophilus thiocyanatoxydans	0.91 %
Aquitalea magnusonii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Aquitalea → Aquitalea magnusonii	0.91 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.91 %
Achromobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005179\|Ga0066684_10524228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	795	Open in IMG/M
3300005450\|Ga0066682_10180489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae	1349	Open in IMG/M
3300005450\|Ga0066682_10817547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Thioalkalispiraceae → Thiohalophilus → Thiohalophilus thiocyanatoxydans	561	Open in IMG/M
3300005451\|Ga0066681_10817792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	562	Open in IMG/M
3300005536\|Ga0070697_100566287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	997	Open in IMG/M
3300005538\|Ga0070731_11147102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	513	Open in IMG/M
3300005542\|Ga0070732_10578444	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005548\|Ga0070665_100059930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3815	Open in IMG/M
3300005614\|Ga0068856_100323053	All Organisms → cellular organisms → Bacteria → Proteobacteria	1561	Open in IMG/M
3300006034\|Ga0066656_10303253	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300006174\|Ga0075014_100266955	All Organisms → cellular organisms → Bacteria → Proteobacteria	890	Open in IMG/M
3300009551\|Ga0105238_10026104	All Organisms → cellular organisms → Bacteria → Proteobacteria	5953	Open in IMG/M
3300009826\|Ga0123355_12211139	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300010048\|Ga0126373_13230720	Not Available	507	Open in IMG/M
3300010049\|Ga0123356_12692095	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300010359\|Ga0126376_13141507	Not Available	511	Open in IMG/M
3300010375\|Ga0105239_10831257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1059	Open in IMG/M
3300011120\|Ga0150983_14679915	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300012205\|Ga0137362_11584745	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300012224\|Ga0134028_1299671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	585	Open in IMG/M
3300012361\|Ga0137360_10626552	All Organisms → cellular organisms → Bacteria → Proteobacteria	921	Open in IMG/M
3300012383\|Ga0134033_1139497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	540	Open in IMG/M
3300012683\|Ga0137398_10067699	Not Available	2168	Open in IMG/M
3300012925\|Ga0137419_10946998	Not Available	711	Open in IMG/M
3300012975\|Ga0134110_10129679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1033	Open in IMG/M
3300014157\|Ga0134078_10012991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2487	Open in IMG/M
3300014166\|Ga0134079_10432619	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M
3300014325\|Ga0163163_13047316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	523	Open in IMG/M
3300014884\|Ga0180104_1257977	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300014968\|Ga0157379_10244833	All Organisms → cellular organisms → Bacteria → Proteobacteria	1627	Open in IMG/M
3300014968\|Ga0157379_10372511	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1309	Open in IMG/M
3300014968\|Ga0157379_12090882	Not Available	561	Open in IMG/M
3300015054\|Ga0137420_1409213	Not Available	714	Open in IMG/M
3300015356\|Ga0134073_10014056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1833	Open in IMG/M
3300016294\|Ga0182041_10034885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3267	Open in IMG/M
3300016319\|Ga0182033_10874706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	795	Open in IMG/M
3300016341\|Ga0182035_10984092	Not Available	747	Open in IMG/M
3300016357\|Ga0182032_10227207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1437	Open in IMG/M
3300016371\|Ga0182034_10182125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	1609	Open in IMG/M
3300016445\|Ga0182038_10226516	Not Available	1488	Open in IMG/M
3300017937\|Ga0187809_10437761	Not Available	504	Open in IMG/M
3300017959\|Ga0187779_10041247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2677	Open in IMG/M
3300017973\|Ga0187780_10616743	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300019866\|Ga0193756_1002139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2114	Open in IMG/M
3300020581\|Ga0210399_11568643	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300021088\|Ga0210404_10549737	Not Available	654	Open in IMG/M
3300021178\|Ga0210408_10019355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	5451	Open in IMG/M
3300021406\|Ga0210386_11787628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	506	Open in IMG/M
3300021407\|Ga0210383_11252784	All Organisms → cellular organisms → Bacteria → Proteobacteria	622	Open in IMG/M
3300021432\|Ga0210384_10481116	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300021441\|Ga0213871_10073707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	968	Open in IMG/M
3300021441\|Ga0213871_10244214	Not Available	569	Open in IMG/M
3300021559\|Ga0210409_10041565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	4361	Open in IMG/M
3300024227\|Ga0228598_1032635	Not Available	1026	Open in IMG/M
3300025898\|Ga0207692_10792613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	619	Open in IMG/M
3300025928\|Ga0207700_10227368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1584	Open in IMG/M
3300025940\|Ga0207691_11339539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	590	Open in IMG/M
3300026315\|Ga0209686_1082740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1134	Open in IMG/M
3300026330\|Ga0209473_1291597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	546	Open in IMG/M
3300026333\|Ga0209158_1316022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	539	Open in IMG/M
3300026538\|Ga0209056_10456866	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300026555\|Ga0179593_1113475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2355	Open in IMG/M
3300026734\|Ga0208211_104232	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300027655\|Ga0209388_1143233	Not Available	677	Open in IMG/M
3300027669\|Ga0208981_1121258	Not Available	667	Open in IMG/M
3300027680\|Ga0207826_1203687	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300027842\|Ga0209580_10268086	All Organisms → cellular organisms → Bacteria → Proteobacteria	850	Open in IMG/M
3300028047\|Ga0209526_10171057	All Organisms → cellular organisms → Bacteria → Proteobacteria	1515	Open in IMG/M
3300028379\|Ga0268266_10615777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1043	Open in IMG/M
3300029636\|Ga0222749_10016735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2996	Open in IMG/M
3300031247\|Ga0265340_10160385	All Organisms → cellular organisms → Bacteria → Proteobacteria	1022	Open in IMG/M
3300031543\|Ga0318516_10041182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2484	Open in IMG/M
3300031544\|Ga0318534_10735592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	556	Open in IMG/M
3300031573\|Ga0310915_10096616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1989	Open in IMG/M
3300031640\|Ga0318555_10151614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1241	Open in IMG/M
3300031668\|Ga0318542_10499398	All Organisms → cellular organisms → Bacteria → Proteobacteria	632	Open in IMG/M
3300031719\|Ga0306917_11186478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	593	Open in IMG/M
3300031740\|Ga0307468_102541997	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300031748\|Ga0318492_10120953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1302	Open in IMG/M
3300031748\|Ga0318492_10242696	All Organisms → cellular organisms → Bacteria → Proteobacteria	929	Open in IMG/M
3300031765\|Ga0318554_10006062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5746	Open in IMG/M
3300031765\|Ga0318554_10245195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1020	Open in IMG/M
3300031769\|Ga0318526_10359257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	595	Open in IMG/M
3300031771\|Ga0318546_10116853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1768	Open in IMG/M
3300031777\|Ga0318543_10054745	All Organisms → cellular organisms → Bacteria → Proteobacteria	1637	Open in IMG/M
3300031777\|Ga0318543_10061844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1551	Open in IMG/M
3300031778\|Ga0318498_10287855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	738	Open in IMG/M
3300031779\|Ga0318566_10170994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1078	Open in IMG/M
3300031797\|Ga0318550_10639069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	511	Open in IMG/M
3300031805\|Ga0318497_10760321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	543	Open in IMG/M
3300031819\|Ga0318568_10833037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	572	Open in IMG/M
3300031845\|Ga0318511_10075781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1397	Open in IMG/M
3300031859\|Ga0318527_10031889	Not Available	1965	Open in IMG/M
3300031860\|Ga0318495_10059453	All Organisms → cellular organisms → Bacteria	1698	Open in IMG/M
3300031860\|Ga0318495_10431875	Not Available	579	Open in IMG/M
3300031893\|Ga0318536_10101787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1441	Open in IMG/M
3300031941\|Ga0310912_10448998	All Organisms → cellular organisms → Bacteria → Proteobacteria	1005	Open in IMG/M
3300031945\|Ga0310913_11226795	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300031954\|Ga0306926_12459435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	572	Open in IMG/M
3300031981\|Ga0318531_10104944	Not Available	1247	Open in IMG/M
3300032008\|Ga0318562_10076542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1872	Open in IMG/M
3300032009\|Ga0318563_10204524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Chromobacteriaceae → Aquitalea → Aquitalea magnusonii	1065	Open in IMG/M
3300032043\|Ga0318556_10046449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter	2086	Open in IMG/M
3300032043\|Ga0318556_10757070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	505	Open in IMG/M
3300032090\|Ga0318518_10398452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	706	Open in IMG/M
3300032180\|Ga0307471_100119406	Not Available	2451	Open in IMG/M
3300032180\|Ga0307471_101532858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	824	Open in IMG/M
3300032205\|Ga0307472_102449006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	530	Open in IMG/M
3300032893\|Ga0335069_10849356	Not Available	1024	Open in IMG/M
3300033289\|Ga0310914_10407346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1231	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.45%
Host-Associated	Host-Associated	14.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.73%
Plants	Host-Associated → Plants	12.73%
Aquatic	Environmental → Aquatic	2.73%
Arthropoda	Host-Associated → Arthropoda	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.91%
Sediment	Environmental → Aquatic → Sediment	1.82%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.82%
Loam	Environmental → Terrestrial → Soil → Loam	8.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.45%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.82%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012224	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012383	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014884	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1Da	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300019866	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026734	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN393 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066684_105242281	3300005179	Soil	LIIASRNGNAALVQRLLSAGASARLRNKDHASAADVAQARAFTAIAELLKNA*
Ga0066682_101804892	3300005450	Soil	TALIIASRNGNATLVQRLLSAGASTRLRNKDHASAADVARARAFTAIAELLKTA*
Ga0066682_108175472	3300005450	Soil	TALIIASRNGNATLVQRLLSAGASTRLRNKDHASAADVARARAFTAISELLKTA*
Ga0066681_108177921	3300005451	Soil	QNEFGDTALIIASRNGDSALVRRLLSAGASARLRNKDHASAADVAQARAFTAIAELLKNA
Ga0070697_1005662872	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LVERLLKAGASTRLRNKDHLSAADVAAARSFSAIADLLKSA*
Ga0070731_111471021	3300005538	Surface Soil	EAGASTRLRNKDRKTAADIATARSFSAIARMLSGA*
Ga0070732_105784442	3300005542	Surface Soil	LAAGASSRLRNHDRLTAADVADARAFPKLAQLLNGA*
Ga0070665_1000599305	3300005548	Switchgrass Rhizosphere	LIIASRNGNAALVKRLLAAGATTRIRNRDRATAADVAAARSFREVAALLN*
Ga0068856_1003230531	3300005614	Corn Rhizosphere	RNGNTALARRLVNAGASTRLRNKDRLTAADVAAARSFPGLADLLKGS*
Ga0066656_103032531	3300006034	Soil	LSAGASTALRNKDRSTAADVARARAFPAVVELLKKS*
Ga0075014_1002669553	3300006174	Watersheds	QNQFGDTALIIASRDGNSEIVRQLLHAGASTRLRNRDKQTAEDVASARSFAKIAQLLNGA
Ga0105238_100261041	3300009551	Corn Rhizosphere	RKGDVTLVKRLLAAGASTRLRNENRQSAADVAEARSFSQVTALLRG*
Ga0123355_122111391	3300009826	Termite Gut	ALIIATRNGNSVLVRRLLTSGASTRLRNKDRLSAADVAAARSFPAIAELLKGA*
Ga0126373_132307202	3300010048	Tropical Forest Soil	DTALIIATRSGNDAVVHRLLESGASTRLRNRDRLTAADVAAARSFDSIAQALKGA*
Ga0123356_126920952	3300010049	Termite Gut	LIIATRNGNSALVRRLLTSGASTRLRNKDRLSAADVAAARSFPAIAELLKGA*
Ga0126376_131415071	3300010359	Tropical Forest Soil	AVMVKRLLSAGTSTRLRNKDRASAADEARERALTAIFELLKSA*
Ga0105239_108312571	3300010375	Corn Rhizosphere	RNGNTALARRLVNAGASTRLRNKDRLTAADVAAARSFPGLAGLLKGS*
Ga0150983_146799151	3300011120	Forest Soil	ASRNGNTALVQRLLKAGASTRLRNKDKASAADVARARAFTDIAELLKNA*
Ga0137362_115847451	3300012205	Vadose Zone Soil	NAALVQRLLKAGASTRLRNKDRASAADVARARAFSAISELLKNA*
Ga0134028_12996712	3300012224	Grasslands Soil	DTALIIASRNGNAALVRRLLSAGASTALRNKDRSTAADLARARAFPAVVELLKNA*
Ga0137360_106265521	3300012361	Vadose Zone Soil	ASRNGNTALVQRLLSAGASTRLRNKNKASAADVARARAFTAIADLLKNA*
Ga0134033_11394971	3300012383	Grasslands Soil	GNAALVRRLLSAGASTALRNKDRSTAADVARARAFPAVVELLKNA*
Ga0137398_100676991	3300012683	Vadose Zone Soil	VDKDTQNEFGDTALIIASRNGNTALVQRLLSAGASTRLRNKNKASAADVAGARAFTAIAELLKNA*
Ga0137419_109469981	3300012925	Vadose Zone Soil	ASRNGNTALVQRLLKAGASTRLRNKDRASAADVARARAFPAIAELLKNA*
Ga0134110_101296792	3300012975	Grasslands Soil	QNEFGDTALIIASRNGDAALVRRLLSAGASARLRNKDHASAADVAQARAFTAIAELLKNA
Ga0134078_100129911	3300014157	Grasslands Soil	IASRNGNAALVRRLLSAGASTALRNKDRSTAADVARARAFPAVVELLKNA*
Ga0134079_104326192	3300014166	Grasslands Soil	LLSAGASTRLRNKNHASAADVARERAFTAIAELLKSA*
Ga0163163_130473161	3300014325	Switchgrass Rhizosphere	NGNTALARRLVNAGASTRLRNKDRLTAADVAAARSFPGLADLLKGT*
Ga0180104_12579772	3300014884	Soil	RADLVRMLLDAKASAGLRNRQGAAAADVARARDFPAVVELLDRS*
Ga0157379_102448331	3300014968	Switchgrass Rhizosphere	RNGNTALARRLVNAGASTRLRNKDRLTAADVAAARSFPGLADLLKGT*
Ga0157379_103725111	3300014968	Switchgrass Rhizosphere	PLVKRLLGAGAATRVRNRDRATAADVAQARSFTEVIALLKG*
Ga0157379_120908821	3300014968	Switchgrass Rhizosphere	TALIIASRNGDAKTVRVLLDAGASTKLRNQDRATAADIATARDFDQVLALLRR*
Ga0137420_14092131	3300015054	Vadose Zone Soil	TALVQRLLKAGASTRLRNKDRASAADVARARAFPAIAELLKNA*
Ga0134073_100140563	3300015356	Grasslands Soil	RLLSAGASARLRNKDHASAADVAQARAFTAIAELLKNA*
Ga0182041_100348851	3300016294	Soil	KAGASTRLRNKDHLSAADVAAARSFSAIADRLKSA
Ga0182033_108747062	3300016319	Soil	VLVQRLLKAGASTRLRNKDRLTAADVAAARSFSGIAQTLTGV
Ga0182035_109840921	3300016341	Soil	GNDAVVRRLLQAGASTRLRNRDRLSAADIAAARSFDSIAQALKGA
Ga0182032_102272072	3300016357	Soil	LIIASRNGNSVLVQRLLKAGASTRLRNKDRLTAADVAAARSFSGIAQTLTGV
Ga0182034_101821251	3300016371	Soil	AQNDFGDTALIIATRSGNDAVVHRLLQAGASTRLRNRDRLTAADVAAARSFDAIAEALKG
Ga0182038_102265163	3300016445	Soil	VPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAA
Ga0187809_104377612	3300017937	Freshwater Sediment	IIATRSGNDAVVRRLLESGASKRLRNRDRLTAADVAAARSFDSIAHALEGA
Ga0187779_100412471	3300017959	Tropical Peatland	DKDAQNAFGDTALIIASRSGDRVLVQRLLGSGASTRLRNSARLTAADVAAARSFPAIAQLLAGS
Ga0187780_106167431	3300017973	Tropical Peatland	TALIVASRNGDAALVRRLVDAGASTRLRNKDRKSAADVASARSFPAIAQLLGGG
Ga0193756_10021393	3300019866	Soil	LVQRLLKAGASTRLRNKDRASAADVARARAFSAISELLKNA
Ga0210399_115686432	3300020581	Soil	LIIASRNGNAAVVKRLLGAGASTRLRNKDKATAEDVAAARAFPAISALLKAA
Ga0210404_105497372	3300021088	Soil	IIASRNGNAALVQRLLKAGASTRLRNKNRASAADVARARAFSAISELLKNA
Ga0210408_100193553	3300021178	Soil	KAGASTRLRNKDHLSAADVAAARSFSAIADMLKSA
Ga0210386_117876281	3300021406	Soil	RNGNNALVQRLLKAGASTRLRNKDHLSAADVAAARSFSAIADMLKSA
Ga0210383_112527842	3300021407	Soil	IIASRNGNAAVVKRLLGAGASTRLRNKDKATAEDVAAARAFPAISALLKAA
Ga0210384_104811161	3300021432	Soil	VQRLLGAGASTRLRNKNRASAADVAQARSFAAVTALLKQS
Ga0213871_100737072	3300021441	Rhizosphere	NDALVQSLLKAGASTRLRNKDHLSAADVAAARSFSAIADLLKSA
Ga0213871_102442141	3300021441	Rhizosphere	LLSAGVSARLRNRDRLTAADIAGARSFRGIAELLRGV
Ga0210409_100415651	3300021559	Soil	ALVRRLLSAGASTRLRNKDRATAADVARARSFAAISELLKDA
Ga0228598_10326352	3300024227	Rhizosphere	ALIVASRNGDSALVRKLVDAGASTRLRNKDRKSAADIATARSFPAIAGLLGGA
Ga0207692_107926131	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	TALARRLVNAGASTRLRNKDRLTAADVAAARSFPGLADLLKGS
Ga0207700_102273681	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LVNAGASTRLRNKDRLTAADVAAARSFPGLADLLKGS
Ga0207691_113395392	3300025940	Miscanthus Rhizosphere	VNAGASTRLRNKDRLTAADVAAARSFPGLADLLKGT
Ga0209686_10827402	3300026315	Soil	DAARVRRLLSAGASARLRNKDHASAADVAQARAFTAIAELLKNA
Ga0209473_12915972	3300026330	Soil	AALVQRLLSAGASTRLRNKNHASAADVARERAFTAIAELLKNA
Ga0209158_13160221	3300026333	Soil	NGNAALVRRLLSAGASTALRNKDRSTAADVARARAFPAVVELLKNA
Ga0209056_104568662	3300026538	Soil	TALIIASRNGNAALVRRLLSAGASTALRNKDRSTAADVARARAFPAVVELLKNA
Ga0179593_11134752	3300026555	Vadose Zone Soil	VQRLLKAGASTRLRNKDRASAADVARARAFSAISELLKNA
Ga0208211_1042322	3300026734	Soil	AQHVDKDTQNEFGDTALIIASRNGNTALVQRLLSAGASTRLRNKNKASAADVAAARAFTAIADLLKNA
Ga0209388_11432331	3300027655	Vadose Zone Soil	SRNGNAALVQRLLKAGASTRLRNKDRASAADVARARAFSAISELLKNA
Ga0208981_11212581	3300027669	Forest Soil	ASRNGNTALVQRLLSAGASTRLRNKNKASAADVARARAFTAIADLLKNA
Ga0207826_12036871	3300027680	Tropical Forest Soil	RNGDAALVRKLLGSGASTRLRNKDRLTAADVASARAFPAIAELLAGA
Ga0209580_102680861	3300027842	Surface Soil	ARNGEHALVAKLLDAGASARLRNKDRKSAGDVAAARSFTAIAGMLQGT
Ga0209526_101710572	3300028047	Forest Soil	ASRNGNAALVQRLLKAGASTRLRNKDKASAEDVARARAFSAISELLKNA
Ga0268266_106157772	3300028379	Switchgrass Rhizosphere	NAGASTRLRNKDRLTAADVAAARSFPGLADLLKGT
Ga0222749_100167352	3300029636	Soil	VISASRSGNAALVQRLLKAGASTRLRNKDKASAEDVARARAFSAISELLKNA
Ga0265340_101603851	3300031247	Rhizosphere	QRLLKAGASARLRNQDRRTAEDIAEARAFTRVAELLHSA
Ga0318516_100411822	3300031543	Soil	VRHRVPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFDAIAEALKGA
Ga0318534_107355922	3300031544	Soil	IIASRNGNDALVQRLLKAGASTRLRNKDHLSAADVAAARSFSAIADLLKSA
Ga0310915_100966162	3300031573	Soil	ASRNGNSVLVQRLLKSGASTRLRNKDRLSAADVAAARSFSGIAHTLAGA
Ga0318555_101516143	3300031640	Soil	VPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFDAIAEALKGA
Ga0318542_104993982	3300031668	Soil	VRHRVPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFEAIAEALKGA
Ga0306917_111864781	3300031719	Soil	IIASRNGNSVLVQRLLKAGASTRLRNKDHLTAADVAAARSFSAIAQTLAGA
Ga0307468_1025419971	3300031740	Hardwood Forest Soil	VVKRLLGAGASTRLRNKDKATAADVAAARAFTAISELLKDA
Ga0318492_101209532	3300031748	Soil	RLLKSGASTRLRNKDRLSAADVAAARSFSGIAHTLAGA
Ga0318492_102426961	3300031748	Soil	TALIIATRSGNDAVVHRLLQAGASTRLRNRDRLTAADIAAARSFDSIAQALTGA
Ga0318554_100060627	3300031765	Soil	VRHRVPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFDAIAEALK
Ga0318554_102451952	3300031765	Soil	GNSVLVQRLLKAGASTRLRNKDRLTAADVAAARSFSGIAQTLTGV
Ga0318526_103592572	3300031769	Soil	LVERLLKAGASTRLRNKDHLSAADVAAARSFSAIADRLKSA
Ga0318546_101168531	3300031771	Soil	RLLKAGASTRLRNKDHLSAADVAAARSFSAIADRLKSA
Ga0318543_100547453	3300031777	Soil	VRHRVPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFDA
Ga0318543_100618442	3300031777	Soil	VQRLLKAGASTRLRNKDHLSAADVAAARSFSAIADLLKSA
Ga0318498_102878552	3300031778	Soil	SRNGNSVLVQRLLTGGASTRLRNKDRLSAADVAAARSFSGIAQTLAGA
Ga0318566_101709941	3300031779	Soil	VQRLLKAGASTRLRNKDRLTAADVAAARSFSGIAQTLTGV
Ga0318550_106390691	3300031797	Soil	SRNGNSVLVQRLLKGGASTRLRNKDRLSAADVAAARSFSAIAQTLAGA
Ga0318497_107603211	3300031805	Soil	ASRNGNDALVQRLLKAGASTRLRNKDHLSAADVAAARSFSAIADLLKSA
Ga0318568_108330371	3300031819	Soil	RLLKGGASTRLRNKDRLSAADVAAARSFSAIAQTLAGA
Ga0318511_100757811	3300031845	Soil	IIASRNGNSVLVQRLLKSGASARLRNKDRLSAADVAAARSFSGIAHTLAGA
Ga0318527_100318893	3300031859	Soil	ALIIATRSGNDAVVHRLLQAGASTRLRNRDRLSAADVAAARSFDSIAQALKGA
Ga0318495_100594532	3300031860	Soil	RLLKSGASTRLRNKDRLSAADVAAARSFSGIAQKLTGA
Ga0318495_104318752	3300031860	Soil	VRHRVPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFDAIAEAL
Ga0318536_101017871	3300031893	Soil	NGNSVLVQRLLKSGASTRLRNKDRLSAADVAAARSFSGIAHTLAGA
Ga0310912_104489982	3300031941	Soil	IATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFDAIAEALKGA
Ga0310913_112267952	3300031945	Soil	TALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSFDAIAEALKGA
Ga0306926_124594352	3300031954	Soil	SRNGNSVLVQRLLKAGASTRLRNKDHLTAADVAAARSFSGIAQTLAGA
Ga0318531_101049443	3300031981	Soil	VVHRLLQAGASTRLRNRDRLSAADVAAARSFDSIAQALKGA
Ga0318562_100765422	3300032008	Soil	GDTALIIASRNGNNALVERLLKAGASTRLRNKDHLSAADVAAARSFSAIADRLKSA
Ga0318563_102045241	3300032009	Soil	MWRSCADLLESGASTRLRNHDRLTAAAVAAARSFEAIAE
Ga0318556_100464493	3300032043	Soil	VRHRVPPRTALIIATRSGNVALVRRLLESGASTRLRNRDRLTAADVAAARSF
Ga0318556_107570702	3300032043	Soil	DTALIIASRNGNDALVQRLLKAGASTRLRNKDHLSAADVAAARSFSAIADLLKSA
Ga0318518_103984522	3300032090	Soil	VQRLLKSGASARLRNKDRLSAADVAAARSFSGIAHTLAGA
Ga0307471_1001194061	3300032180	Hardwood Forest Soil	NEFGDTALIIASRNGNAGLVQRLLGAGASTRLRNKNRASAADVAQARSFAAVTALLKQS
Ga0307471_1015328582	3300032180	Hardwood Forest Soil	SRNGNTALARRLVNAGASTRLRNKDRLTAADVAAARSFPGLADLLKGT
Ga0307472_1024490062	3300032205	Hardwood Forest Soil	RRLLSAGASTRLRNKDRLTAADVASARSFSALADLLAGT
Ga0335069_108493561	3300032893	Soil	NKAVVARLLESGASTRLRNKDRLSAADVATARSFSAIAQSLAGA
Ga0310914_104073462	3300033289	Soil	IASRNGNSVLVQRLLKAGASTRLRNKDRLTAADVAAARSFSGIAQTLTGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087605

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences