NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087592

Metagenome / Metatranscriptome Family F087592

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087592
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 42 residues
Representative Sequence MKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESQ
Number of Associated Samples 102
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 51.43 %
% of genes near scaffold ends (potentially truncated) 93.64 %
% of genes from short scaffolds (< 2000 bps) 86.36 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.909 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland
(13.636 % of family members)
Environment Ontology (ENVO) Unclassified
(30.909 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(38.182 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 42.65%    β-sheet: 0.00%    Coil/Unstructured: 57.35%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF00486Trans_reg_C 89.09
PF13801Metal_resist 7.27
PF00664ABC_membrane 1.82
PF08241Methyltransf_11 0.91
PF0563523S_rRNA_IVP 0.91



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.91 %
All OrganismsrootAll Organisms19.09 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001154|JGI12636J13339_1049120Not Available524Open in IMG/M
3300001593|JGI12635J15846_10134782All Organisms → cellular organisms → Bacteria1720Open in IMG/M
3300002245|JGIcombinedJ26739_100842769Not Available798Open in IMG/M
3300004091|Ga0062387_101195125All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300004092|Ga0062389_100495762All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1367Open in IMG/M
3300004470|Ga0068967_1253422Not Available583Open in IMG/M
3300005554|Ga0066661_10512244All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae724Open in IMG/M
3300006052|Ga0075029_100562265All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300006059|Ga0075017_100725009All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300006059|Ga0075017_101199927All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300006174|Ga0075014_100931512All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300006358|Ga0068871_100121082All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2210Open in IMG/M
3300006796|Ga0066665_11264101All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300007258|Ga0099793_10314778Not Available762Open in IMG/M
3300009029|Ga0066793_10479484Not Available712Open in IMG/M
3300009038|Ga0099829_10938865Not Available718Open in IMG/M
3300009090|Ga0099827_10390981Not Available1188Open in IMG/M
3300009143|Ga0099792_11054174Not Available545Open in IMG/M
3300009521|Ga0116222_1267281Not Available738Open in IMG/M
3300009524|Ga0116225_1074573All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1595Open in IMG/M
3300009638|Ga0116113_1114078Not Available659Open in IMG/M
3300009646|Ga0116132_1190311Not Available623Open in IMG/M
3300009665|Ga0116135_1002760All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7802Open in IMG/M
3300010339|Ga0074046_10885474Not Available520Open in IMG/M
3300010341|Ga0074045_10117454Not Available1828Open in IMG/M
3300010341|Ga0074045_10886375Not Available563Open in IMG/M
3300010358|Ga0126370_10190309Not Available1540Open in IMG/M
3300011085|Ga0138581_1038070Not Available561Open in IMG/M
3300012189|Ga0137388_11095432Not Available733Open in IMG/M
3300012205|Ga0137362_10131369All Organisms → cellular organisms → Bacteria2130Open in IMG/M
3300012917|Ga0137395_10909165Not Available636Open in IMG/M
3300012922|Ga0137394_10419879Not Available1140Open in IMG/M
3300012923|Ga0137359_10705005Not Available879Open in IMG/M
3300012971|Ga0126369_11273438Not Available825Open in IMG/M
3300014325|Ga0163163_10064452All Organisms → cellular organisms → Bacteria3636Open in IMG/M
3300014638|Ga0181536_10341174Not Available684Open in IMG/M
3300014839|Ga0182027_11298194Not Available726Open in IMG/M
3300015193|Ga0167668_1077927Not Available648Open in IMG/M
3300017925|Ga0187856_1072421Not Available1433Open in IMG/M
3300017925|Ga0187856_1256828Not Available614Open in IMG/M
3300017928|Ga0187806_1372014Not Available513Open in IMG/M
3300017929|Ga0187849_1362605Not Available533Open in IMG/M
3300017938|Ga0187854_10041108All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2363Open in IMG/M
3300017943|Ga0187819_10528152Not Available672Open in IMG/M
3300017948|Ga0187847_10207824Not Available1067Open in IMG/M
3300017955|Ga0187817_11123010Not Available505Open in IMG/M
3300017975|Ga0187782_11393354Not Available551Open in IMG/M
3300017988|Ga0181520_10274010Not Available1277Open in IMG/M
3300017995|Ga0187816_10119020Not Available1137Open in IMG/M
3300017995|Ga0187816_10385344Not Available622Open in IMG/M
3300017996|Ga0187891_1188820Not Available709Open in IMG/M
3300018009|Ga0187884_10238649Not Available742Open in IMG/M
3300018016|Ga0187880_1051782Not Available2190Open in IMG/M
3300018023|Ga0187889_10311505Not Available694Open in IMG/M
3300018038|Ga0187855_10110961All Organisms → cellular organisms → Bacteria1652Open in IMG/M
3300018042|Ga0187871_10368346Not Available794Open in IMG/M
3300018042|Ga0187871_10811740Not Available522Open in IMG/M
3300018043|Ga0187887_10339413Not Available887Open in IMG/M
3300018046|Ga0187851_10060622All Organisms → cellular organisms → Bacteria2435Open in IMG/M
3300018085|Ga0187772_10074371Not Available2141Open in IMG/M
3300018085|Ga0187772_11419295Not Available516Open in IMG/M
3300019787|Ga0182031_1218990Not Available1887Open in IMG/M
3300020583|Ga0210401_11414506Not Available553Open in IMG/M
3300021405|Ga0210387_11166212Not Available670Open in IMG/M
3300021433|Ga0210391_11467100Not Available523Open in IMG/M
3300021475|Ga0210392_11498992Not Available504Open in IMG/M
3300025419|Ga0208036_1036666Not Available892Open in IMG/M
3300025419|Ga0208036_1070959Not Available558Open in IMG/M
3300025506|Ga0208937_1022121All Organisms → cellular organisms → Bacteria1585Open in IMG/M
3300025507|Ga0208188_1112080Not Available605Open in IMG/M
3300026507|Ga0257165_1041109Not Available822Open in IMG/M
3300027432|Ga0209421_1010355All Organisms → cellular organisms → Bacteria → Proteobacteria1756Open in IMG/M
3300027562|Ga0209735_1077106Not Available722Open in IMG/M
3300027565|Ga0209219_1039743Not Available1173Open in IMG/M
3300027625|Ga0208044_1011153All Organisms → cellular organisms → Bacteria3437Open in IMG/M
3300027648|Ga0209420_1040539Not Available1427Open in IMG/M
3300027681|Ga0208991_1170074Not Available639Open in IMG/M
3300027846|Ga0209180_10233776Not Available1059Open in IMG/M
3300027854|Ga0209517_10605453Not Available579Open in IMG/M
3300027894|Ga0209068_10325920Not Available866Open in IMG/M
3300027911|Ga0209698_11115759Not Available584Open in IMG/M
3300028536|Ga0137415_10699080Not Available827Open in IMG/M
3300028649|Ga0302162_10056277Not Available890Open in IMG/M
3300028798|Ga0302222_10452197Not Available503Open in IMG/M
3300028874|Ga0302155_10524704Not Available502Open in IMG/M
3300029883|Ga0311327_10515319Not Available731Open in IMG/M
3300029943|Ga0311340_10145672All Organisms → cellular organisms → Bacteria2490Open in IMG/M
3300030580|Ga0311355_10538296Not Available1113Open in IMG/M
3300030617|Ga0311356_10998339Not Available782Open in IMG/M
3300030706|Ga0310039_10100398Not Available1210Open in IMG/M
3300030879|Ga0265765_1023296Not Available760Open in IMG/M
3300031057|Ga0170834_101752667Not Available556Open in IMG/M
3300031233|Ga0302307_10322080Not Available789Open in IMG/M
3300031234|Ga0302325_10778479Not Available1356Open in IMG/M
3300031715|Ga0307476_11301248Not Available530Open in IMG/M
3300031820|Ga0307473_10166475Not Available1273Open in IMG/M
3300031962|Ga0307479_11720241Not Available580Open in IMG/M
3300032180|Ga0307471_100727157Not Available1158Open in IMG/M
3300032205|Ga0307472_100697566Not Available912Open in IMG/M
3300032205|Ga0307472_102731077Not Available505Open in IMG/M
3300032261|Ga0306920_102844215Not Available658Open in IMG/M
3300032829|Ga0335070_10769091Not Available897Open in IMG/M
3300032897|Ga0335071_10621747Not Available1031Open in IMG/M
3300032955|Ga0335076_10435330Not Available1195Open in IMG/M
3300033004|Ga0335084_10680677Not Available1049Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland13.64%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.27%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland6.36%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil6.36%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds5.45%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.45%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa5.45%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.64%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.64%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.73%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil2.73%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.82%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.82%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog1.82%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.91%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.91%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.91%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.91%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.91%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.91%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.91%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.91%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001154Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004470Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009029Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009524Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaGEnvironmentalOpen in IMG/M
3300009638Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10EnvironmentalOpen in IMG/M
3300009646Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300011085Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015193Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)EnvironmentalOpen in IMG/M
3300016702Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300017988Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaGEnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300017996Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40EnvironmentalOpen in IMG/M
3300018009Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40EnvironmentalOpen in IMG/M
3300018016Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40EnvironmentalOpen in IMG/M
3300018023Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018043Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020015Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1EnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300025419Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025506Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025507Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)EnvironmentalOpen in IMG/M
3300026507Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-BEnvironmentalOpen in IMG/M
3300027432Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027648Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028649Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_2EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300028874Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_1EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300030580II_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030617II_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300030836Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031044Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031233Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12636J13339_104912013300001154Forest SoilMRSLFLRIFLSFWAAQALFLVLAILVTIALRPARHGIESQG
JGI12635J15846_1013478243300001593Forest SoilMKSLFLRIFLSFWAAQALFLVLAILVTIAMRPARH
JGIcombinedJ26739_10084276913300002245Forest SoilMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESEGPQILAEV
Ga0062387_10119512523300004091Bog Forest SoilMKSLFLRIFLSFWAALALSLVLAILVTIALRPARRGIESQGL
Ga0062389_10049576213300004092Bog Forest SoilMKSLFLKIFLSFWAAQALFVVLAILATIALSPTRHGIESES
Ga0068967_125342223300004470Peatlands SoilMRSLFLKIFLSFLAALALSLVLAILVTIALRPKRHGIENEAPQTLAEAVNAY
Ga0066661_1051224413300005554SoilMRSLFLRIFLSFWAAQALFLVLAILVTIAMRPARHGIESQGPQ
Ga0075029_10056226523300006052WatershedsMKSLFLRIFLSFWVAQALFLVLAILVTIAMRPTRHGIE
Ga0075017_10072500923300006059WatershedsMKSLFLKIFLSFWAAQALFVVLAILVTIALRPARH
Ga0075017_10119992713300006059WatershedsMKSLFLKIFLSFWVAQALFIVLAILVTIALSPARHGIESESPQVLAEAVNAYQ
Ga0075014_10093151223300006174WatershedsMKSLFLKIFLSFWVAQALFIVLAILVTIALSPARHGIESESPQVLAEA
Ga0068871_10012108243300006358Miscanthus RhizosphereMRLFLRIFLSFWLAQALFLVLAILVTIVMRPTRRI
Ga0066665_1126410113300006796SoilMRSLFLRIFLSFWAAQALFLVLAILVTIAMRPARHGIESQGPQIL
Ga0099793_1031477823300007258Vadose Zone SoilMRSLFLRIFLSFWAAQALFLVLAILVTIALRPARHGIESQGPQIL
Ga0066793_1047948413300009029Prmafrost SoilMKSLFLKIFLSFWAAQAMFLELAILVMIALRPARPGLESQ
Ga0099829_1093886513300009038Vadose Zone SoilMRSLFLKIFLSFWAAQALFLVLAILLVIALRATREPGI
Ga0099827_1039098113300009090Vadose Zone SoilMRSLFLKIFLSFWAAQALFLVLAILVFIGLRHNREPGIESLGGRVI
Ga0105240_1016478653300009093Corn RhizosphereMRSLFLKIFLSYWLALALFMVFAILVTLAIRPPRE
Ga0099792_1105417423300009143Vadose Zone SoilMKSLFLKIFLSFWAAQALFLVLAILATIALRPARH
Ga0116222_126728123300009521Peatlands SoilMKSLFLKIFVSFWAVLALSLVLAIVVTIALRPERRGIESQAPQTL
Ga0116225_107457333300009524Peatlands SoilMKSLFLKIFLSFWAALALSLVLAILVTIALRPARHGIESQG
Ga0116113_111407813300009638PeatlandMKSLFVRIFLSFWAAQALFIVLAILVTIAMRPARRG
Ga0116132_119031113300009646PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIAVRPARHGIESEGPQILAEAVNAYQ
Ga0116135_100276013300009665PeatlandVRSLFLRIFLSFWAAQALLVVLAILLTMAFRPRNAT
Ga0074046_1088547423300010339Bog Forest SoilMKSLFLKIFLSFWAAQALFLVLAILVTIALRPTRHGVESEGPQILAEIV
Ga0074045_1011745413300010341Bog Forest SoilMKSLFLKIFLSLWAALALSMVLAILVTIALRPPRHAMESQAPQILAEVVN
Ga0074045_1088637523300010341Bog Forest SoilMKSLFLKIFLSFWAAQALFLVLAILVTMALRPARHGIESEAPQILAEAVNAYQ
Ga0126370_1019030913300010358Tropical Forest SoilMRSLFLRIFLSFWAAQGIFIVLAILVTIARTPGRQERMEGLGAQAL
Ga0138581_103807023300011085Peatlands SoilMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIE
Ga0137388_1109543213300012189Vadose Zone SoilMRSLFLKIFLSFWAAQALFLVLAILVVIALRPTREPGIESLGARVITEAVGA
Ga0137362_1013136913300012205Vadose Zone SoilMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESQ
Ga0137395_1090916523300012917Vadose Zone SoilMKSLFLKIFLSFWAAQALFLVLAILVTIAMRPARHG
Ga0137394_1041987933300012922Vadose Zone SoilMRSLFLKIFLSFWAAQALFLVLAILVVIALRPTREPGIES
Ga0137359_1070500523300012923Vadose Zone SoilMRSLFLRIFLSFWAAQALFLVLAILVTIALRPARHGIESQGP
Ga0126369_1127343823300012971Tropical Forest SoilMKSLFLRIFLSFWAAQALFLVLAILVTIAIRPRHGVENL
Ga0163163_1006445243300014325Switchgrass RhizosphereMRLFLRIFLSFWLAQALFLVLAILVTIVMRPTRRIS*
Ga0181536_1034117413300014638BogMMKSLFLKIFLSFWAAQALFLVLAILVTIALQPARHGIEAEGPQILAEV
Ga0182027_1129819423300014839FenMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESQGSEILAE
Ga0167668_107792723300015193Glacier Forefield SoilMKSLFLKIFLSFWAAQALFLVVAILVTIAMRPARRGMESEGAQILA
Ga0181511_115936723300016702PeatlandMKSLFLKIFLSFWVAQALFLVLAILVMLAFRPQRNST
Ga0187856_107242113300017925PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIAVRPARH
Ga0187856_125682813300017925PeatlandMKSLFLKIFLSFWAALALSLVLAILVTIALRPARR
Ga0187806_137201413300017928Freshwater SedimentMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESQGPQILAE
Ga0187849_136260523300017929PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHG
Ga0187854_1004110813300017938PeatlandMKSLFLKIFLSFWAALALSLVLAILVTIALRPARH
Ga0187819_1052815213300017943Freshwater SedimentMKSLFLKIFLSLWAALALSMVLAILVTIALRPPRHEM
Ga0187847_1020782413300017948PeatlandMKSLFLKIFLSFWIAQALFVVLAILATIALSPRRHGIESEGPQILAEVVNAYQS
Ga0187817_1112301023300017955Freshwater SedimentMKSLFLRIFLSFWAVLALFLVLAILVTIAMRPARDGIENT
Ga0187782_1139335413300017975Tropical PeatlandMKSLFLRIFLSFWAACALFLVLAILVTIAMNPSRRGIASQGPE
Ga0181520_1027401023300017988BogMKSLFLKIFISFWAALALSLVLAIMVTIALRPARRGIESQAPQTLAE
Ga0187816_1011902013300017995Freshwater SedimentMKSLFLKIFLSFWAALALSLVLAILVTIALRPARHGIESQGLQ
Ga0187816_1038534423300017995Freshwater SedimentMKSLFLKIFLSLWAALALSMVLAILVTIALRPPRHAMESQAPQILAEV
Ga0187891_118882023300017996PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIAVRPARHGIES
Ga0187884_1023864913300018009PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIAVRPARHG
Ga0187880_105178213300018016PeatlandMKSLFLKIFLSFWAALALSLVLAIVVTIALRPTRHGIEN
Ga0187889_1031150523300018023PeatlandMKSLFLKIFLSFWAALALSSVLAIVVTIALRPTRHGIENQAPQTLA
Ga0187855_1011096133300018038PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIALSPRRGIESQ
Ga0187871_1036834613300018042PeatlandMKSLFLKIFLSFWAALALSLVLAILVTIALRPARHGIE
Ga0187871_1081174023300018042PeatlandMKSLFLKIFLSFWAAQVLFVVLAILVTIALRPTRHGIE
Ga0187887_1033941313300018043PeatlandMKSLFLKIFLSFWAALALSLVLAIVVTIALRPTRRGIESQAPQA
Ga0187851_1006062243300018046PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIALSPRRGIESQGPQILAEVVN
Ga0187772_1007437113300018085Tropical PeatlandMKSLFLRIFFSFWAAQALFIVLAILVTIATRPARRDI
Ga0187772_1141929513300018085Tropical PeatlandMKSLFLKIFLSFWAAQALFLVLAILATIALNPRHGIETQAPQILAET
Ga0182031_121899053300019787BogMKSLFLKIFLSFWAAQALFLVLAILVTIASARRGTASR
Ga0193734_104112123300020015SoilMRSLFLKIFLSFWVAQALFLVLAVLVTLAIRQQAE
Ga0210401_1141450623300020583SoilMRSLFLRIFLSFWAAQALFLVLAILVTIAMRPARHGIE
Ga0210387_1116621213300021405SoilMKSLFLKIFLSFWIAQALFVVLAILVTIALSPTRHGIESEGPQILAEI
Ga0210391_1146710013300021433SoilMKSLFLKIFLSFWAALALSLVLAILVTIALQPPRRGIASQG
Ga0210392_1149899213300021475SoilMKSLFLRIFLSFWAAQALFLVLAILATIAMRPTRHGIEN
Ga0208036_103666623300025419PeatlandMKSLFLKIFLSFWAALALSLVLAILVTIALRPARHGIESQGLQTLAEAVN
Ga0208036_107095923300025419PeatlandMKSLFLKIFLSFWAALALSLVLAILVTIALRPARRGI
Ga0208937_102212113300025506PeatlandMKSLFLKIFLSFWAAQALFLVLAILVTIAVRPARHGIESEGPQILA
Ga0208188_111208013300025507PeatlandMTRWPDDPIIMKSLFLKIFLSFWAALALSLVLAIVVTIALRPTRHGIENQAPQTLAEAV
Ga0257165_104110913300026507SoilMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESQGSQI
Ga0209421_101035533300027432Forest SoilMKSLFLRIFLSFWAALVLFIILSILVAIAVNPARGIESQEPEILAEAVNAYQS
Ga0209735_107710623300027562Forest SoilMRSLFLRIFLSFWAAQALFLVLAILVTIAVRPARHGIESQA
Ga0209219_103974313300027565Forest SoilMRSLFLRIFLSFWAAQALFLVLAILVTIAMRPARHGIESQGPQILAEAVNA
Ga0208044_101115353300027625Peatlands SoilMKSLFLKIFLSFWAALALSLVLAILVTIALRPARHGIESQGL
Ga0209420_104053933300027648Forest SoilMKSLFLKIFLSFWAVLALSLILAILVTIALGPTRHGIENQGPQTLAEAVNAYE
Ga0208991_117007423300027681Forest SoilMRSLFLKIFLSFWAAQALFLVLAILVVIALRPTRE
Ga0209180_1023377623300027846Vadose Zone SoilMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESQGSQILA
Ga0209517_1060545323300027854Peatlands SoilMKSLFLKIFLSFWAALALSLVLAILVTIALRPARHGIESE
Ga0209068_1032592013300027894WatershedsMKSLFLRIFLSFWAAQALFVVLAILVTIAMRPLRHGME
Ga0209698_1111575923300027911WatershedsMKSLFLKIFLTFWAAQVLFVVLAILVTIALSPARHGIESESPQILAE
Ga0137415_1069908013300028536Vadose Zone SoilMRSLFLKIFLSFWAAQALFLVLAILVVIALRPTREPGIESMGSRVIT
Ga0302162_1005627713300028649FenMKSLFLRIFLSFWAAQALFIVLAILVTIAMSPPRRGIENRS
Ga0302222_1045219713300028798PalsaMKSLFLKIFLSFWAALALSLVLAILVTIAMRPARRGIESQGLQTLAEAVN
Ga0302155_1052470423300028874BogMKSLFLKIFLSFWIAQALFVVLAILATIALSPRRQGIESEGPQILA
Ga0311327_1051531913300029883BogMKSLFLKIFLSFWIAQALFVVLAILATIALSPRRQGIESEGPQILAEVVNAYQ
Ga0311340_1014567213300029943PalsaMKSLFLKIFLSFWAALALSLVLAILVTIAMRPARRGIESQGL
Ga0311355_1053829613300030580PalsaMKSLFLKIFLSFWAVLALSLILAILVTIALGPTRH
Ga0311356_1099833913300030617PalsaMKSLFLKIFLSFWAVLALSLILAILVTIALGPTRHGIE
Ga0310039_1010039833300030706Peatlands SoilMKSLFLKIFLSFWAALALSLVLAILVTIALRPARHGIESQGLQTLAE
Ga0265767_10448313300030836SoilMRSLFLKIFLSFWVALALFLVIAILLTLAFRPRSATW
Ga0265765_102329623300030879SoilMRTLFLKIFLSFWAALALFLVLAILVMLAFRPQRNS
Ga0265747_10300413300031044SoilMRSLFLKIFLSFWVALALFLVIAILLTLAFRPRSATWEA
Ga0170834_10175266723300031057Forest SoilMKSLFLKIFLSFWAAQALFLVLAILVTIALRPARHGIESQGSQILAEAVNAYQGG
Ga0302307_1032208013300031233PalsaMKSLFLKIFLTFWAAQALFVVLAILVTIALRPTRHGIESEGPQILAEVVNAYQSG
Ga0302325_1077847913300031234PalsaMKSLFLKIFLSFWAVLALSLILAILVTIALGPTRHGIENQGPQILAEAVNAYE
Ga0307476_1130124823300031715Hardwood Forest SoilMRSLFLKIFLWFWAALALSLVLAILVTISLRPTRHGVENQAPQTLAEAV
Ga0307473_1016647533300031820Hardwood Forest SoilMRSLFLKIFLSFWAAQALFLVLAILVVIALRPTREPGIESMGARVITEAVG
Ga0307479_1172024123300031962Hardwood Forest SoilMRSLFLRIFLSFWAAQALFLVLAILATIAMRPARHGIESQGPQILAEA
Ga0307471_10072715733300032180Hardwood Forest SoilMRSLFLKIFLSYWLAFALFLVLAILVTLAIRPPRET
Ga0307472_10069756613300032205Hardwood Forest SoilMKSLFLRIFLSFWAAQALFLVLAILATIALRPARHGLESEGPQILAEAV
Ga0307472_10273107713300032205Hardwood Forest SoilMKSLFWRIFLSFWIAQALFLVLAILVTIVFRPRSS
Ga0306920_10284421523300032261SoilMRSLFLKIFLSFWAAQALFIVLAILVTIAMWPGRQSRVAN
Ga0335070_1076909113300032829SoilMRSLFLKIFFSFWGAQALFLVLAILVTLAMRPTREPGLETL
Ga0335071_1062174723300032897SoilMKSLFLKIFLSFWAAQALFVVLAMIAAIAFRPQTEAPH
Ga0335076_1043533013300032955SoilVSFWAAQALFIILAILVTIALNPARHGVESRAPEWLAEAVN
Ga0335084_1068067723300033004SoilMKSLFLRIFFSFWIAFALFVVLAILVTIAFRPRTSTWEA


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