NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087544

Metagenome / Metatranscriptome Family F087544

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087544
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 42 residues
Representative Sequence FANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG
Number of Associated Samples 96
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.64 %
% of genes near scaffold ends (potentially truncated) 96.36 %
% of genes from short scaffolds (< 2000 bps) 92.73 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(19.091 % of family members)
Environment Ontology (ENVO) Unclassified
(25.455 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.455 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.
1F14TC_1035000162
2JGI12053J15887_100607234
3Ga0066396_100327121
4Ga0066388_1019675221
5Ga0066388_1023823202
6Ga0066388_1050778832
7Ga0070663_1017354012
8Ga0070678_1002152092
9Ga0070662_1012467851
10Ga0070697_1012525811
11Ga0066661_103875461
12Ga0066691_102756342
13Ga0066905_1006062662
14Ga0066905_1009022521
15Ga0066905_1016154931
16Ga0066905_1017279131
17Ga0066905_1020181582
18Ga0066903_1070058792
19Ga0066903_1070522671
20Ga0066903_1076995002
21Ga0066903_1084432072
22Ga0066903_1089171452
23Ga0068863_1021572712
24Ga0075363_1007529981
25Ga0075364_109075212
26Ga0070712_1011681282
27Ga0074056_117219141
28Ga0066653_102980351
29Ga0075421_1012632981
30Ga0075420_1005840322
31Ga0075435_1011489642
32Ga0099829_116258092
33Ga0099830_109133322
34Ga0099827_102633841
35Ga0075418_130233732
36Ga0114129_135246231
37Ga0105243_117717112
38Ga0111538_116453902
39Ga0126382_111702811
40Ga0126382_112791482
41Ga0126373_119323433
42Ga0126376_125968392
43Ga0126378_103099571
44Ga0134124_102810542
45Ga0137383_109347431
46Ga0137380_116385102
47Ga0137379_115553552
48Ga0137390_119926701
49Ga0150984_1121499961
50Ga0137373_106214202
51Ga0137395_105992682
52Ga0137413_106146381
53Ga0164300_100307931
54Ga0126369_113787601
55Ga0134077_103255662
56Ga0164305_109992101
57Ga0163162_118837471
58Ga0157379_114927152
59Ga0157379_118716632
60Ga0132258_104491965
61Ga0132257_1000311819
62Ga0132255_1009521481
63Ga0182036_101468132
64Ga0182035_103346021
65Ga0182038_102203562
66Ga0190266_105930222
67Ga0184639_104842732
68Ga0190270_123122442
69Ga0173481_100475701
70Ga0210386_117422332
71Ga0126371_113071331
72Ga0209239_11927981
73Ga0209527_10651891
74Ga0209528_11187801
75Ga0208990_11029881
76Ga0209180_105804532
77Ga0268266_108064071
78Ga0247822_118020511
79Ga0307276_101944132
80Ga0307284_101348592
81Ga0307305_101693762
82Ga0247824_102988062
83Ga0307501_101869742
84Ga0307499_100562062
85Ga0310888_104146192
86Ga0318516_107577162
87Ga0318542_101815733
88Ga0318572_108106731
89Ga0318493_101599442
90Ga0306918_102400392
91Ga0318494_103850221
92Ga0318494_105512272
93Ga0318537_100907493
94Ga0318546_110830522
95Ga0318576_102544321
96Ga0318565_105704861
97Ga0318568_103116921
98Ga0318512_100274553
99Ga0306919_112004052
100Ga0318522_100088113
101Ga0306923_125373471
102Ga0310916_102434532
103Ga0310916_103016822
104Ga0318530_100038054
105Ga0318507_100251343
106Ga0318559_100239051
107Ga0318558_106475302
108Ga0318506_102423392
109Ga0306924_110047691
110Ga0306920_1029503241
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.12%    β-sheet: 0.00%    Coil/Unstructured: 55.88%
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510152025303540FANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYGSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Soil
Grasslands Soil
Soil
Soil
Soil
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Populus Endosphere
Populus Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
9.1%10.0%6.4%19.1%7.3%12.7%3.6%5.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F14TC_10350001623300000559SoilFANPRVIAEMIKTYESGXXXXXRRAEIDRANALALFPKYA*
JGI12053J15887_1006072343300001661Forest SoilANPRVIAEALSTYESGFLSEERRFAIDRGNALGLLPKYATAV*
Ga0066396_1003271213300004267Tropical Forest SoilVVFGTDYPFANPRVIAEMVKTYESGFLSQARRAEIDRTNALALFPKYC*
Ga0066388_10196752213300005332Tropical Forest SoilVFGTDYPFANPRVIAEMIKTYESGFLSDARRAQIDRANALALFPKYA*
Ga0066388_10238232023300005332Tropical Forest SoilANPRVIAEMIKTYESGFLPDARRADIDRTNALALFSKYA*
Ga0066388_10507788323300005332Tropical Forest SoilANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0070663_10173540123300005455Corn RhizosphereTDFPFANPRVIAEMIKTHESGFLSAARRADIDRANALALFPKYG*
Ga0070678_10021520923300005456Miscanthus RhizosphereFPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0070662_10124678513300005457Corn RhizosphereTDFPFANPRVIAEMIKTHESGFLSGARRAEIDRANALALFPKYG*
Ga0070697_10125258113300005536Corn, Switchgrass And Miscanthus RhizosphereVIAEMIKTYESGFLSASRRAEIDRGNALALFPDMGESRD*
Ga0066661_1038754613300005554SoilVVFGTDYPFANPRVIAEMIKTYESGFLSDARRAQIDRTNALALFPKYG*
Ga0066691_1027563423300005586SoilYPFANPRVIAEMIKTYESGFLSDARRAQIDRTNALALFPKYG*
Ga0066905_10060626623300005713Tropical Forest SoilVFGTDYPFANPRVIAEMIKTYESGFLSPARRAQIDRTNAPALFPKYA*
Ga0066905_10090225213300005713Tropical Forest SoilFANPRVIAEMIRTYESGFLPDARRAAIDRANALALFPKYRISE*
Ga0066905_10161549313300005713Tropical Forest SoilRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA*
Ga0066905_10172791313300005713Tropical Forest SoilFANPRVIAEMIRTYESGFLPDARRAAIDRANALALFPKYRVSE*
Ga0066905_10201815823300005713Tropical Forest SoilVFGTDYPFANPRVIAEMIKTYESGFLSPARRAQIDRTNALALFPKYE*
Ga0066903_10700587923300005764Tropical Forest SoilPGVIAEAVKTHESGFLPDARRAAIDRGNALALFPKHGA*
Ga0066903_10705226713300005764Tropical Forest SoilRVIAEMIKTYESGSFSDARRAEIDRANALALFPKYV*
Ga0066903_10769950023300005764Tropical Forest SoilFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA*
Ga0066903_10844320723300005764Tropical Forest SoilGTDYPFANPRVIAEMIKTYESGFLSGARRAEIDRANALALFPNYG*
Ga0066903_10891714523300005764Tropical Forest SoilFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG*
Ga0068863_10215727123300005841Switchgrass RhizosphereTDFPFANPRVIAEMIRTHESGFLPDARRADIDRTNALALFPKYG*
Ga0075363_10075299813300006048Populus EndosphereDYPFANPRVIAEAVKTHEAGFLDGGRRAAIDRGNALALFPKYV*
Ga0075364_1090752123300006051Populus EndosphereFPFANPRVIAEMIRTYESGFLPDDRRAAIDRTNALALFPKYRISE*
Ga0070712_10116812823300006175Corn, Switchgrass And Miscanthus RhizosphereSDYPFANARVIAEMIKTYESGFLSDARRAAIDRGNALALFPRYG*
Ga0074056_1172191413300006574SoilFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0066653_1029803513300006791SoilYPFANPRVIAEMIKTYESGFLSPARRAEIDRGNALALFPKYG*
Ga0075421_10126329813300006845Populus RhizosphereFANPRVIAEMIKTYESGFLSQTRRAQIDRANALALFPKYG*
Ga0075420_10058403223300006853Populus RhizosphereVVFGTDFPFANPRVIAEMIRTYESGFLPDDRRAAIDRTNALALFPKYRISE*
Ga0075435_10114896423300007076Populus RhizosphereNPRVIAEMIRTHESGFLPDARRADIDRTNAIALFPKYG*
Ga0099829_1162580923300009038Vadose Zone SoilRPERIVFGSDFPFANPRVIAEAVKTHEAGFLPEARRIAVDRANALALFPKYAV*
Ga0099830_1091333223300009088Vadose Zone SoilPERIVFGSDFPFANPRVIAQAVKTYESGFLSEGRRMAIDRANALALFPKYAA*
Ga0099827_1026338413300009090Vadose Zone SoilIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0075418_1302337323300009100Populus RhizosphereVFGTDFPFANPRVIAEMIRTYEGGFLPPVRRAAIDRANALALFPKYGVSE*
Ga0114129_1352462313300009147Populus RhizosphereIAEMIKTYESGFLSAARRAEIDRANVLALFPNYG*
Ga0105243_1177171123300009148Miscanthus RhizosphereFPFANPRVIAEMIKTHESGFLSAARRADIDRANALALFPKYG*
Ga0111538_1164539023300009156Populus RhizosphereFGTDFPFANPNVIAEAVKTHESGFLDANRSAAIDRGNALALFPRYRGL*
Ga0126382_1117028113300010047Tropical Forest SoilTDYPFANPRVIAEMIKTYESGFLSPARRAQIDRTNALALFPKYE*
Ga0126382_1127914823300010047Tropical Forest SoilFANARVIAEMIKTYESGFLSPARRAEIDRGNALALFPKYS*
Ga0126373_1193234333300010048Tropical Forest SoilFPFANPRVVAQAVATYEAPFLPPERRSAIDRANALALFPKYAG*
Ga0126376_1259683923300010359Tropical Forest SoilYPFANPRVIAEMIKTYETGFLSDARRAEIDRANVLALFPKYG*
Ga0126378_1030995713300010361Tropical Forest SoilIAEMIKTYESGFLSAARRAEIDRGNALALFPRYG*
Ga0134124_1028105423300010397Terrestrial SoilRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0137383_1093474313300012199Vadose Zone SoilPFANARVIAEMIKTYESGFLSDARRAAIDRGNALALFPRYG*
Ga0137380_1163851023300012206Vadose Zone SoilFANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0137379_1155535523300012209Vadose Zone SoilSDYPFANARVIAEMVKTYESGFLSEGRRAQIDRGNALALFPKYS*
Ga0137390_1199267013300012363Vadose Zone SoilPRVIAEMVKTHESGFLADAKRAAIDRSNALALFPKFA*
Ga0150984_11214999613300012469Avena Fatua RhizosphereTDFPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0137373_1062142023300012532Vadose Zone SoilVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0137395_1059926823300012917Vadose Zone SoilFGTDYPFANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0137413_1061463813300012924Vadose Zone SoilPFANPHVIGEAVTTYESGFLSDARRAAIDRGNALALFPKYA*
Ga0164300_1003079313300012951SoilTDFPFANPRVIAEMIRTYESGFLTDARRADIDRTNALALFPKYG*
Ga0126369_1137876013300012971Tropical Forest SoilPDVIAEMVQTYESGFLSDARRAAIDRGNALALFPKYA*
Ga0134077_1032556623300012972Grasslands SoilARVIAEMVKTYESGFLSEGRRVQIDRGNALALFPKYS*
Ga0164305_1099921013300012989SoilTDFPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYR*
Ga0163162_1188374713300013306Switchgrass RhizosphereFGTDFPFANPRVIAEMIRTYESGFLPDARRADIDRTNALALFPKYG*
Ga0157379_1149271523300014968Switchgrass RhizosphereFANPRVIAEMIKTHQSGFLSDARRAEIDRANALALFPKYG*
Ga0157379_1187166323300014968Switchgrass RhizospherePFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0132258_1044919653300015371Arabidopsis RhizosphereDFPFANARVIAEAVKTHESGFLPEVRRAAIDRENALALFPKYAR*
Ga0132257_10003118193300015373Arabidopsis RhizosphereIAEMIKTYESGFLSAARRAEIDRANALALFPNYG*
Ga0132255_10095214813300015374Arabidopsis RhizosphereDFPFANPRVIAEMIRTYESGFLPDDRRAAIDRANALALFPKYRVSD*
Ga0182036_1014681323300016270SoilPFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG
Ga0182035_1033460213300016341SoilANPRVVAQAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0182038_1022035623300016445SoilANPRVIAEMIKTYESGFLSEARRAQIDRTNALSLFPRYA
Ga0190266_1059302223300017965SoilFANPHVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG
Ga0184639_1048427323300018082Groundwater SedimentDHVALPERSVCGPDLPCANPRESAEMIRTYESGFLSEARRAEIGRTNALALFPRFG
Ga0190270_1231224423300018469SoilPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKFG
Ga0173481_1004757013300019356SoilTDFPFANPRVIAEMIRTHESGFLPDARRADIDRTNALALFPKYG
Ga0210386_1174223323300021406SoilTDYPFANPRVIAEMIKTYESGFLSAARRAEIDRGNALALFPNYG
Ga0126371_1130713313300021560Tropical Forest SoilRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG
Ga0209239_119279813300026310Grasslands SoilRVIAEMIKTYESGFLSDARRAQIDRANALALFPKYG
Ga0209527_106518913300027583Forest SoilDFPFANPRVIAEALSTYESGFLSEERRFAIDRANALALLPKYATAV
Ga0209528_111878013300027610Forest SoilANPRVIAEALSTYESGFLSEERRFAIDRANALALLPKYATAV
Ga0208990_110298813300027663Forest SoilGTDYPFANPRVIAEMIRTYESGFLSEARRAEIGRANALTLFPKYG
Ga0209180_1058045323300027846Vadose Zone SoilERIVFGSDFPFANPRVIAEAVKTHEAGFLPEARRIAVDRANALALFPKYAV
Ga0268266_1080640713300028379Switchgrass RhizosphereANPRVIAEMIKTHESGFLSAARRADIDRANALALFPKYG
Ga0247822_1180205113300028592SoilVVFGTDFPFANPRVIAEMIKTHESGFLSYARRAEIDRANALALFPKYG
Ga0307276_1019441323300028705SoilVFGTDYPFANPRVIAEMIKTYESGFLSAARRAEIDRGNALALFPS
Ga0307284_1013485923300028799SoilRVIAEMIRTYESGFLSEARRAEIGRANALTLFPKYG
Ga0307305_1016937623300028807SoilPFANPRVIAEMIRTYESGFLSEARRAEIGRANALTLFPKYG
Ga0247824_1029880623300028809SoilVVFGTDFPFANPRVIAEMIKTHESGFLSDVRRAEIDRANALALFPKYG
Ga0307501_1018697423300031152SoilFANPRVIAEMIRTYESGFLSEARRAEIGRTNALTLFPKYG
Ga0307499_1005620623300031184SoilPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG
Ga0310888_1041461923300031538SoilVVFGTDFPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG
Ga0318516_1075771623300031543SoilNPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0318542_1018157333300031668SoilTDFPFANPRVVAQAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0318572_1081067313300031681SoilYPFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0318493_1015994423300031723SoilVFGTDFPFANPRVVAQAVATYEGPFLPPERRTAIDRANALALFPKYAG
Ga0306918_1024003923300031744SoilVRVIAEAVKTYEAGFLSQERRFAIDRGNALALFPKYANTSSQS
Ga0318494_1038502213300031751SoilVIAEMIKTYESGFLSEARRAQIDRTNALSLFPRYA
Ga0318494_1055122723300031751SoilTDVIAEMVQTYESGFLSDARRAAIDRGNALALFPKYA
Ga0318537_1009074933300031763SoilPFANPRVVAQAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0318546_1108305223300031771SoilANARVVAQAVATYEGPFLPPERRTAIDRANALALFPKYAG
Ga0318576_1025443213300031796SoilGTDFPFANPRVIAEMIKTYESGFLSEARRAQIDRTNALSLFPRYA
Ga0318565_1057048613300031799SoilPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA
Ga0318568_1031169213300031819SoilANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0318512_1002745533300031846SoilVFGTDFPFANPRVIAEMVKTYESGFLSQARRAQIDRTNALALFPKYC
Ga0306919_1120040523300031879SoilPHVIAEMIKTYESGFLSDARRAEIDRANALALFPKYR
Ga0318522_1000881133300031894SoilVFGTDYPFANPRVIAEMIKTYESGFLSQARRAQIDRTNALALFPKYG
Ga0306923_1253734713300031910SoilNPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG
Ga0310916_1024345323300031942SoilVDRVAFPECVVFGTVYAFAIPRFFAEMIKTYESGFLSDARRAQIDRANALALFPKYA
Ga0310916_1030168223300031942SoilTDYPFANPRVIAEMIKTYESGFLSEARRAQIDRANALALFPKYG
Ga0318530_1000380543300031959SoilNPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA
Ga0318507_1002513433300032025SoilVFGTDYPFANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA
Ga0318559_1002390513300032039SoilPRVVAQAVATYEGPFLPPERRTAIDRANALALFPKYAG
Ga0318558_1064753023300032044SoilPDVIAEMVQTYESGFLSDARRAAIDRGNALALFPKYA
Ga0318506_1024233923300032052SoilRVVARAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0306924_1100476913300032076SoilRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0306920_10295032413300032261SoilDYPFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA


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