Metagenome / Metatranscriptome Family F087544

Basic Information
Family ID	F087544
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	42 residues
Representative Sequence	FANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG
Number of Associated Samples	96
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.64 %
% of genes near scaffold ends (potentially truncated)	96.36 %
% of genes from short scaffolds (< 2000 bps)	92.73 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.091 % of family members)
Environment Ontology (ENVO)	Unclassified (25.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.455 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.12% β-sheet: 0.00% Coil/Unstructured: 55.88%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF03972	MmgE_PrpD	69.09
PF04909	Amidohydro_2	4.55
PF04286	DUF445	2.73
PF09084	NMT1	1.82
PF04392	ABC_sub_bind	0.91
PF00355	Rieske	0.91
PF01546	Peptidase_M20	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	69.09
COG2733	Uncharacterized membrane-anchored protein YjiN, DUF445 family	Function unknown [S]	2.73
COG4399	Uncharacterized membrane protein YheB, UPF0754 family	Function unknown [S]	2.73
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.82
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.82
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.27 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	75.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7.27 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	62.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.45 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	62.73 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	62.73 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	62.73 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.91 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.91 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	62.73 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.91 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.91 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Rhizobiales bacterium GAS188	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	0.91 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_103500016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300001661\|JGI12053J15887_10060723	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300004267\|Ga0066396_10032712	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300005332\|Ga0066388_101967522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1046	Open in IMG/M
3300005332\|Ga0066388_102382320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	960	Open in IMG/M
3300005332\|Ga0066388_105077883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	668	Open in IMG/M
3300005455\|Ga0070663_101735401	All Organisms → cellular organisms → Bacteria → Proteobacteria	559	Open in IMG/M
3300005456\|Ga0070678_100215209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1594	Open in IMG/M
3300005457\|Ga0070662_101246785	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300005536\|Ga0070697_101252581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	661	Open in IMG/M
3300005554\|Ga0066661_10387546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	855	Open in IMG/M
3300005586\|Ga0066691_10275634	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300005713\|Ga0066905_100606266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	927	Open in IMG/M
3300005713\|Ga0066905_100902252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	773	Open in IMG/M
3300005713\|Ga0066905_101615493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300005713\|Ga0066905_101727913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300005713\|Ga0066905_102018158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300005764\|Ga0066903_107005879	All Organisms → cellular organisms → Bacteria → Proteobacteria	585	Open in IMG/M
3300005764\|Ga0066903_107052267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300005764\|Ga0066903_107699500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300005764\|Ga0066903_108443207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	525	Open in IMG/M
3300005764\|Ga0066903_108917145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300005841\|Ga0068863_102157271	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300006048\|Ga0075363_100752998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	590	Open in IMG/M
3300006051\|Ga0075364_10907521	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300006175\|Ga0070712_101168128	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300006574\|Ga0074056_11721914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300006791\|Ga0066653_10298035	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300006845\|Ga0075421_101263298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	820	Open in IMG/M
3300006853\|Ga0075420_100584032	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300007076\|Ga0075435_101148964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679	Open in IMG/M
3300009038\|Ga0099829_11625809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300009088\|Ga0099830_10913332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300009090\|Ga0099827_10263384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1452	Open in IMG/M
3300009100\|Ga0075418_13023373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300009147\|Ga0114129_13524623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300009148\|Ga0105243_11771711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300009156\|Ga0111538_11645390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300010047\|Ga0126382_11170281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	687	Open in IMG/M
3300010047\|Ga0126382_11279148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300010048\|Ga0126373_11932343	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300010359\|Ga0126376_12596839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300010361\|Ga0126378_10309957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1683	Open in IMG/M
3300010397\|Ga0134124_10281054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1543	Open in IMG/M
3300012199\|Ga0137383_10934743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	633	Open in IMG/M
3300012206\|Ga0137380_11638510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300012209\|Ga0137379_11555355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300012363\|Ga0137390_11992670	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012469\|Ga0150984_112149996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300012532\|Ga0137373_10621420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	813	Open in IMG/M
3300012917\|Ga0137395_10599268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300012924\|Ga0137413_10614638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300012951\|Ga0164300_10030793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1967	Open in IMG/M
3300012971\|Ga0126369_11378760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	795	Open in IMG/M
3300012972\|Ga0134077_10325566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300012989\|Ga0164305_10999210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300013306\|Ga0163162_11883747	All Organisms → cellular organisms → Bacteria → Proteobacteria	684	Open in IMG/M
3300014968\|Ga0157379_11492715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300014968\|Ga0157379_11871663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300015371\|Ga0132258_10449196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3213	Open in IMG/M
3300015373\|Ga0132257_100031181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5774	Open in IMG/M
3300015374\|Ga0132255_100952148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1286	Open in IMG/M
3300016270\|Ga0182036_10146813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1674	Open in IMG/M
3300016341\|Ga0182035_10334602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1253	Open in IMG/M
3300016445\|Ga0182038_10220356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1507	Open in IMG/M
3300017965\|Ga0190266_10593022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300018082\|Ga0184639_10484273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300018469\|Ga0190270_12312244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	599	Open in IMG/M
3300019356\|Ga0173481_10047570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1462	Open in IMG/M
3300021406\|Ga0210386_11742233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300021560\|Ga0126371_11307133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	858	Open in IMG/M
3300026310\|Ga0209239_1192798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	747	Open in IMG/M
3300027583\|Ga0209527_1065189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	820	Open in IMG/M
3300027610\|Ga0209528_1118780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	583	Open in IMG/M
3300027663\|Ga0208990_1102988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	791	Open in IMG/M
3300027846\|Ga0209180_10580453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300028379\|Ga0268266_10806407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	907	Open in IMG/M
3300028592\|Ga0247822_11802051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300028705\|Ga0307276_10194413	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300028799\|Ga0307284_10134859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	944	Open in IMG/M
3300028807\|Ga0307305_10169376	All Organisms → cellular organisms → Bacteria → Proteobacteria	1007	Open in IMG/M
3300028809\|Ga0247824_10298806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	906	Open in IMG/M
3300031152\|Ga0307501_10186974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300031184\|Ga0307499_10056206	All Organisms → cellular organisms → Bacteria → Proteobacteria	979	Open in IMG/M
3300031538\|Ga0310888_10414619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300031543\|Ga0318516_10757716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300031668\|Ga0318542_10181573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1056	Open in IMG/M
3300031681\|Ga0318572_10810673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300031723\|Ga0318493_10159944	All Organisms → cellular organisms → Bacteria → Proteobacteria	1170	Open in IMG/M
3300031744\|Ga0306918_10240039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1380	Open in IMG/M
3300031751\|Ga0318494_10385022	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	813	Open in IMG/M
3300031751\|Ga0318494_10551227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	673	Open in IMG/M
3300031763\|Ga0318537_10090749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1129	Open in IMG/M
3300031771\|Ga0318546_11083052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	563	Open in IMG/M
3300031796\|Ga0318576_10254432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	829	Open in IMG/M
3300031799\|Ga0318565_10570486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300031819\|Ga0318568_10311692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	977	Open in IMG/M
3300031846\|Ga0318512_10027455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS188	2411	Open in IMG/M
3300031879\|Ga0306919_11200405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300031894\|Ga0318522_10008811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2974	Open in IMG/M
3300031910\|Ga0306923_12537347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300031942\|Ga0310916_10243453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1514	Open in IMG/M
3300031942\|Ga0310916_10301682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1356	Open in IMG/M
3300031959\|Ga0318530_10003805	All Organisms → cellular organisms → Bacteria → Proteobacteria	4376	Open in IMG/M
3300032025\|Ga0318507_10025134	All Organisms → cellular organisms → Bacteria → Proteobacteria	2162	Open in IMG/M
3300032039\|Ga0318559_10023905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2372	Open in IMG/M
3300032044\|Ga0318558_10647530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300032052\|Ga0318506_10242339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	798	Open in IMG/M
3300032076\|Ga0306924_11004769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300032261\|Ga0306920_102950324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	80.91%
Host-Associated	Host-Associated	19.09%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.00%
Plants	Host-Associated → Plants	19.09%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.45%
Roots	Host-Associated → Plants → Roots	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.91%
Loam	Environmental → Terrestrial → Soil → Loam	19.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.18%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.18%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.64%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.36%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006574	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087544

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1035000162	3300000559	Soil	FANPRVIAEMIKTYESGXXXXXRRAEIDRANALALFPKYA*
JGI12053J15887_100607234	3300001661	Forest Soil	ANPRVIAEALSTYESGFLSEERRFAIDRGNALGLLPKYATAV*
Ga0066396_100327121	3300004267	Tropical Forest Soil	VVFGTDYPFANPRVIAEMVKTYESGFLSQARRAEIDRTNALALFPKYC*
Ga0066388_1019675221	3300005332	Tropical Forest Soil	VFGTDYPFANPRVIAEMIKTYESGFLSDARRAQIDRANALALFPKYA*
Ga0066388_1023823202	3300005332	Tropical Forest Soil	ANPRVIAEMIKTYESGFLPDARRADIDRTNALALFSKYA*
Ga0066388_1050778832	3300005332	Tropical Forest Soil	ANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0070663_1017354012	3300005455	Corn Rhizosphere	TDFPFANPRVIAEMIKTHESGFLSAARRADIDRANALALFPKYG*
Ga0070678_1002152092	3300005456	Miscanthus Rhizosphere	FPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0070662_1012467851	3300005457	Corn Rhizosphere	TDFPFANPRVIAEMIKTHESGFLSGARRAEIDRANALALFPKYG*
Ga0070697_1012525811	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VIAEMIKTYESGFLSASRRAEIDRGNALALFPDMGESRD*
Ga0066661_103875461	3300005554	Soil	VVFGTDYPFANPRVIAEMIKTYESGFLSDARRAQIDRTNALALFPKYG*
Ga0066691_102756342	3300005586	Soil	YPFANPRVIAEMIKTYESGFLSDARRAQIDRTNALALFPKYG*
Ga0066905_1006062662	3300005713	Tropical Forest Soil	VFGTDYPFANPRVIAEMIKTYESGFLSPARRAQIDRTNAPALFPKYA*
Ga0066905_1009022521	3300005713	Tropical Forest Soil	FANPRVIAEMIRTYESGFLPDARRAAIDRANALALFPKYRISE*
Ga0066905_1016154931	3300005713	Tropical Forest Soil	RVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA*
Ga0066905_1017279131	3300005713	Tropical Forest Soil	FANPRVIAEMIRTYESGFLPDARRAAIDRANALALFPKYRVSE*
Ga0066905_1020181582	3300005713	Tropical Forest Soil	VFGTDYPFANPRVIAEMIKTYESGFLSPARRAQIDRTNALALFPKYE*
Ga0066903_1070058792	3300005764	Tropical Forest Soil	PGVIAEAVKTHESGFLPDARRAAIDRGNALALFPKHGA*
Ga0066903_1070522671	3300005764	Tropical Forest Soil	RVIAEMIKTYESGSFSDARRAEIDRANALALFPKYV*
Ga0066903_1076995002	3300005764	Tropical Forest Soil	FANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA*
Ga0066903_1084432072	3300005764	Tropical Forest Soil	GTDYPFANPRVIAEMIKTYESGFLSGARRAEIDRANALALFPNYG*
Ga0066903_1089171452	3300005764	Tropical Forest Soil	FANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG*
Ga0068863_1021572712	3300005841	Switchgrass Rhizosphere	TDFPFANPRVIAEMIRTHESGFLPDARRADIDRTNALALFPKYG*
Ga0075363_1007529981	3300006048	Populus Endosphere	DYPFANPRVIAEAVKTHEAGFLDGGRRAAIDRGNALALFPKYV*
Ga0075364_109075212	3300006051	Populus Endosphere	FPFANPRVIAEMIRTYESGFLPDDRRAAIDRTNALALFPKYRISE*
Ga0070712_1011681282	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SDYPFANARVIAEMIKTYESGFLSDARRAAIDRGNALALFPRYG*
Ga0074056_117219141	3300006574	Soil	FANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0066653_102980351	3300006791	Soil	YPFANPRVIAEMIKTYESGFLSPARRAEIDRGNALALFPKYG*
Ga0075421_1012632981	3300006845	Populus Rhizosphere	FANPRVIAEMIKTYESGFLSQTRRAQIDRANALALFPKYG*
Ga0075420_1005840322	3300006853	Populus Rhizosphere	VVFGTDFPFANPRVIAEMIRTYESGFLPDDRRAAIDRTNALALFPKYRISE*
Ga0075435_1011489642	3300007076	Populus Rhizosphere	NPRVIAEMIRTHESGFLPDARRADIDRTNAIALFPKYG*
Ga0099829_116258092	3300009038	Vadose Zone Soil	RPERIVFGSDFPFANPRVIAEAVKTHEAGFLPEARRIAVDRANALALFPKYAV*
Ga0099830_109133322	3300009088	Vadose Zone Soil	PERIVFGSDFPFANPRVIAQAVKTYESGFLSEGRRMAIDRANALALFPKYAA*
Ga0099827_102633841	3300009090	Vadose Zone Soil	IAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0075418_130233732	3300009100	Populus Rhizosphere	VFGTDFPFANPRVIAEMIRTYEGGFLPPVRRAAIDRANALALFPKYGVSE*
Ga0114129_135246231	3300009147	Populus Rhizosphere	IAEMIKTYESGFLSAARRAEIDRANVLALFPNYG*
Ga0105243_117717112	3300009148	Miscanthus Rhizosphere	FPFANPRVIAEMIKTHESGFLSAARRADIDRANALALFPKYG*
Ga0111538_116453902	3300009156	Populus Rhizosphere	FGTDFPFANPNVIAEAVKTHESGFLDANRSAAIDRGNALALFPRYRGL*
Ga0126382_111702811	3300010047	Tropical Forest Soil	TDYPFANPRVIAEMIKTYESGFLSPARRAQIDRTNALALFPKYE*
Ga0126382_112791482	3300010047	Tropical Forest Soil	FANARVIAEMIKTYESGFLSPARRAEIDRGNALALFPKYS*
Ga0126373_119323433	3300010048	Tropical Forest Soil	FPFANPRVVAQAVATYEAPFLPPERRSAIDRANALALFPKYAG*
Ga0126376_125968392	3300010359	Tropical Forest Soil	YPFANPRVIAEMIKTYETGFLSDARRAEIDRANVLALFPKYG*
Ga0126378_103099571	3300010361	Tropical Forest Soil	IAEMIKTYESGFLSAARRAEIDRGNALALFPRYG*
Ga0134124_102810542	3300010397	Terrestrial Soil	RVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0137383_109347431	3300012199	Vadose Zone Soil	PFANARVIAEMIKTYESGFLSDARRAAIDRGNALALFPRYG*
Ga0137380_116385102	3300012206	Vadose Zone Soil	FANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0137379_115553552	3300012209	Vadose Zone Soil	SDYPFANARVIAEMVKTYESGFLSEGRRAQIDRGNALALFPKYS*
Ga0137390_119926701	3300012363	Vadose Zone Soil	PRVIAEMVKTHESGFLADAKRAAIDRSNALALFPKFA*
Ga0150984_1121499961	3300012469	Avena Fatua Rhizosphere	TDFPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0137373_106214202	3300012532	Vadose Zone Soil	VIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0137395_105992682	3300012917	Vadose Zone Soil	FGTDYPFANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYG*
Ga0137413_106146381	3300012924	Vadose Zone Soil	PFANPHVIGEAVTTYESGFLSDARRAAIDRGNALALFPKYA*
Ga0164300_100307931	3300012951	Soil	TDFPFANPRVIAEMIRTYESGFLTDARRADIDRTNALALFPKYG*
Ga0126369_113787601	3300012971	Tropical Forest Soil	PDVIAEMVQTYESGFLSDARRAAIDRGNALALFPKYA*
Ga0134077_103255662	3300012972	Grasslands Soil	ARVIAEMVKTYESGFLSEGRRVQIDRGNALALFPKYS*
Ga0164305_109992101	3300012989	Soil	TDFPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYR*
Ga0163162_118837471	3300013306	Switchgrass Rhizosphere	FGTDFPFANPRVIAEMIRTYESGFLPDARRADIDRTNALALFPKYG*
Ga0157379_114927152	3300014968	Switchgrass Rhizosphere	FANPRVIAEMIKTHQSGFLSDARRAEIDRANALALFPKYG*
Ga0157379_118716632	3300014968	Switchgrass Rhizosphere	PFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG*
Ga0132258_104491965	3300015371	Arabidopsis Rhizosphere	DFPFANARVIAEAVKTHESGFLPEVRRAAIDRENALALFPKYAR*
Ga0132257_1000311819	3300015373	Arabidopsis Rhizosphere	IAEMIKTYESGFLSAARRAEIDRANALALFPNYG*
Ga0132255_1009521481	3300015374	Arabidopsis Rhizosphere	DFPFANPRVIAEMIRTYESGFLPDDRRAAIDRANALALFPKYRVSD*
Ga0182036_101468132	3300016270	Soil	PFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG
Ga0182035_103346021	3300016341	Soil	ANPRVVAQAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0182038_102203562	3300016445	Soil	ANPRVIAEMIKTYESGFLSEARRAQIDRTNALSLFPRYA
Ga0190266_105930222	3300017965	Soil	FANPHVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG
Ga0184639_104842732	3300018082	Groundwater Sediment	DHVALPERSVCGPDLPCANPRESAEMIRTYESGFLSEARRAEIGRTNALALFPRFG
Ga0190270_123122442	3300018469	Soil	PFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKFG
Ga0173481_100475701	3300019356	Soil	TDFPFANPRVIAEMIRTHESGFLPDARRADIDRTNALALFPKYG
Ga0210386_117422332	3300021406	Soil	TDYPFANPRVIAEMIKTYESGFLSAARRAEIDRGNALALFPNYG
Ga0126371_113071331	3300021560	Tropical Forest Soil	RVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG
Ga0209239_11927981	3300026310	Grasslands Soil	RVIAEMIKTYESGFLSDARRAQIDRANALALFPKYG
Ga0209527_10651891	3300027583	Forest Soil	DFPFANPRVIAEALSTYESGFLSEERRFAIDRANALALLPKYATAV
Ga0209528_11187801	3300027610	Forest Soil	ANPRVIAEALSTYESGFLSEERRFAIDRANALALLPKYATAV
Ga0208990_11029881	3300027663	Forest Soil	GTDYPFANPRVIAEMIRTYESGFLSEARRAEIGRANALTLFPKYG
Ga0209180_105804532	3300027846	Vadose Zone Soil	ERIVFGSDFPFANPRVIAEAVKTHEAGFLPEARRIAVDRANALALFPKYAV
Ga0268266_108064071	3300028379	Switchgrass Rhizosphere	ANPRVIAEMIKTHESGFLSAARRADIDRANALALFPKYG
Ga0247822_118020511	3300028592	Soil	VVFGTDFPFANPRVIAEMIKTHESGFLSYARRAEIDRANALALFPKYG
Ga0307276_101944132	3300028705	Soil	VFGTDYPFANPRVIAEMIKTYESGFLSAARRAEIDRGNALALFPS
Ga0307284_101348592	3300028799	Soil	RVIAEMIRTYESGFLSEARRAEIGRANALTLFPKYG
Ga0307305_101693762	3300028807	Soil	PFANPRVIAEMIRTYESGFLSEARRAEIGRANALTLFPKYG
Ga0247824_102988062	3300028809	Soil	VVFGTDFPFANPRVIAEMIKTHESGFLSDVRRAEIDRANALALFPKYG
Ga0307501_101869742	3300031152	Soil	FANPRVIAEMIRTYESGFLSEARRAEIGRTNALTLFPKYG
Ga0307499_100562062	3300031184	Soil	PRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG
Ga0310888_104146192	3300031538	Soil	VVFGTDFPFANPRVIAEMIKTHESGFLSDARRAEIDRANALALFPKYG
Ga0318516_107577162	3300031543	Soil	NPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0318542_101815733	3300031668	Soil	TDFPFANPRVVAQAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0318572_108106731	3300031681	Soil	YPFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0318493_101599442	3300031723	Soil	VFGTDFPFANPRVVAQAVATYEGPFLPPERRTAIDRANALALFPKYAG
Ga0306918_102400392	3300031744	Soil	VRVIAEAVKTYEAGFLSQERRFAIDRGNALALFPKYANTSSQS
Ga0318494_103850221	3300031751	Soil	VIAEMIKTYESGFLSEARRAQIDRTNALSLFPRYA
Ga0318494_105512272	3300031751	Soil	TDVIAEMVQTYESGFLSDARRAAIDRGNALALFPKYA
Ga0318537_100907493	3300031763	Soil	PFANPRVVAQAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0318546_110830522	3300031771	Soil	ANARVVAQAVATYEGPFLPPERRTAIDRANALALFPKYAG
Ga0318576_102544321	3300031796	Soil	GTDFPFANPRVIAEMIKTYESGFLSEARRAQIDRTNALSLFPRYA
Ga0318565_105704861	3300031799	Soil	PRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA
Ga0318568_103116921	3300031819	Soil	ANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0318512_100274553	3300031846	Soil	VFGTDFPFANPRVIAEMVKTYESGFLSQARRAQIDRTNALALFPKYC
Ga0306919_112004052	3300031879	Soil	PHVIAEMIKTYESGFLSDARRAEIDRANALALFPKYR
Ga0318522_100088113	3300031894	Soil	VFGTDYPFANPRVIAEMIKTYESGFLSQARRAQIDRTNALALFPKYG
Ga0306923_125373471	3300031910	Soil	NPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYG
Ga0310916_102434532	3300031942	Soil	VDRVAFPECVVFGTVYAFAIPRFFAEMIKTYESGFLSDARRAQIDRANALALFPKYA
Ga0310916_103016822	3300031942	Soil	TDYPFANPRVIAEMIKTYESGFLSEARRAQIDRANALALFPKYG
Ga0318530_100038054	3300031959	Soil	NPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA
Ga0318507_100251343	3300032025	Soil	VFGTDYPFANPRVIAEMIKTYESGFLSDARRAEIDRANALALFPKYA
Ga0318559_100239051	3300032039	Soil	PRVVAQAVATYEGPFLPPERRTAIDRANALALFPKYAG
Ga0318558_106475302	3300032044	Soil	PDVIAEMVQTYESGFLSDARRAAIDRGNALALFPKYA
Ga0318506_102423392	3300032052	Soil	RVVARAVATYEAGFLPPERRTAIDRANVLALFPKYAG
Ga0306924_110047691	3300032076	Soil	RVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA
Ga0306920_1029503241	3300032261	Soil	DYPFANPRVIAEMIQTHESGFLSDARRAQIDRANALALFPKYA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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