Metagenome / Metatranscriptome Family F087448

Overview

Basic Information

• Family ID: F087448
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 110
• Average Sequence Length: 42 residues
• Representative Sequence: MTTVPISASEPQKPATPATPQQQTQGNPPKPADKPSEQQK
• Number of Associated Samples: 98
• Number of Associated Scaffolds: 110

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 71.56 %
• % of genes near scaffold ends (potentially truncated): 22.73 %
• % of genes from short scaffolds (< 2000 bps): 91.82 %
• Associated GOLD sequencing projects: 94
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (68.182 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.364 % of family members)
• Environment Ontology (ENVO): Unclassified (30.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (47.273 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 0.00%
  β-sheet: 0.00%
  Coil/Unstructured: 100.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF08379	Bact_transglu_N	4.55
PF04392	ABC_sub_bind	3.64
PF06684	AA_synth	2.73
PF03401	TctC	1.82
PF07536	HWE_HK	1.82
PF13467	RHH_4	0.91
PF13545	HTH_Crp_2	0.91
PF00027	cNMP_binding	0.91
PF13340	DUF4096	0.91
PF13581	HATPase_c_2	0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	4.55
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	3.64
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.82
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	1.82
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	1.82
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.91
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.91

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	31.82 %
Unclassified	root	N/A	68.18 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	31.82 %
Unclassified	root	N/A	68.18 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	31.82 %
Unclassified	root	N/A	68.18 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.45 %
Unclassified	root	N/A	68.18 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %
Unclassified	root	N/A	68.18 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14.55 %
Unclassified	root	N/A	68.18 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.82 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.82 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.91 %
Unclassified	root	N/A	68.18 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.91 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.91 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.82 %
Unclassified	root	N/A	68.18 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.91 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.91 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.91 %
Unclassified	root	N/A	68.18 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.82 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.82 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.91 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.91 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.91 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.82 %
Unclassified	root	N/A	68.18 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300023208|Ga0233424_10212259	All Organisms → cellular organisms → Bacteria	775
2170459014|G1P06HT01CP1G1	Not Available	653
3300001686|C688J18823_10199110	Not Available	1352
3300002568|C688J35102_117700524	Not Available	500
3300003312|P12013IDBA_1036330	All Organisms → cellular organisms → Bacteria → Proteobacteria	1416
3300003996|Ga0055467_10062067	All Organisms → cellular organisms → Bacteria → Proteobacteria	992
3300003998|Ga0055472_10256293	Not Available	553
3300004067|Ga0055485_10024242	Not Available	1208
3300004081|Ga0063454_100837603	Not Available	717
3300004082|Ga0062384_100525669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	788

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.91%
Environmental	Environmental	69.09%
Host-Associated	Host-Associated	30.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	11.82%
Microbial	Host-Associated → Microbial	0.91%
Plants	Host-Associated → Plants	29.09%
Solid Waste	Engineered → Solid Waste	0.91%
Terrestrial	Environmental → Terrestrial	57.27%

Category

Habitat	Taxonomy	Distribution
Bacteria	Host-Associated → Microbial → Bacteria	0.91%
Freshwater	Environmental → Aquatic → Freshwater	5.45%
Grass	Engineered → Solid Waste → Grass	0.91%
Marine	Environmental → Aquatic → Marine	2.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.09%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.45%
Roots	Host-Associated → Plants → Roots	4.55%
Sediment	Environmental → Aquatic → Sediment	3.64%
Soil	Environmental → Terrestrial → Soil	57.27%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.55%
Composting	Engineered → Solid Waste → Grass → Composting	0.91%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.18%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Lake	Environmental → Aquatic → Freshwater → Lake	1.82%
Loam	Environmental → Terrestrial → Soil → Loam	11.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Unclassified	Host-Associated → Microbial → Bacteria → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.45%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.64%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Microbial → Bacteria → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.91%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.91%

Habitat

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.64%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.91%
Micrasterias Crux-Melitensis (Mzch 98) Associated	Host-Associated → Microbial → Bacteria → Unclassified → Unclassified → Micrasterias Crux-Melitensis (Mzch 98) Associated	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.73%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.73%
Ore Pile And Mine Drainage Contaminated Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Ore Pile And Mine Drainage Contaminated Soil	0.91%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.55%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.73%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.82%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
2170459014	Litter degradation PV2	Engineered
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300003312	Ore pile and mine drainage contaminated soil microbial communities from Mina do Sossego, Brazil - P1 sample	Environmental
3300003996	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2	Environmental
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental
3300004067	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2	Environmental
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
2PV_04493460	2170459014	Switchgrass, Maize And Mischanthus Litter	MKDFSMTTVPVSASEPHEARTPATPQQQTQGNPPKPADKPIEQQK
C688J18823_101991103	3300001686	Soil	MTAVPISASEPQKPATPATPQQQTQANPPKPTDKPSEQQK*
C688J35102_1177005242	3300002568	Soil	MTTVPISASEPQTPATPATPQQQTQGNPPKPADKPSEQQK*
P12013IDBA_10363304	3300003312	Ore Pile And Mine Drainage Contaminated Soil	MTNVNLSTEEKKPANPPASPQQTQGNPPKPAEKPAEQQK*
Ga0055467_100620671	3300003996	Natural And Restored Wetlands	MTNVTISASEPQKPASPAPATPRQQTQGTPSKPADKPNEQQK*
Ga0055472_102562932	3300003998	Natural And Restored Wetlands	MSNVNISASEQQKPANPAPATPQQQTQGNPPKPADKAGEQQK*
Ga0055485_100242424	3300004067	Natural And Restored Wetlands	MTNIPVSASNNEQKPSTPANPQQQTQNNPPKPADKPSEQQK*
Ga0063454_1008376031	3300004081	Soil	MTTVPVSASEPQKPATPATPQQQTQGNPPKPADKPSEQQK*
Ga0062384_1005256691	3300004082	Bog Forest Soil	MTNTPNSVSGDQKPATPANPQQQTQNPPKPADKPSEQQK*
Ga0063455_1003040182	3300004153	Soil	MTTVPVSASEPQKPATPTTPQQQTQGNPPKPADKPSEQQK*
Ga0062590_1001041524	3300004157	Soil	MTIINITASNEPQKPANPAPATPQQTQGTPSKPADKPSEQQK*
Ga0062590_1001967192	3300004157	Soil	MTTVPVSAAEPQTPATPATPQQQTQGNPPKPVDKPSEQQK*
Ga0062595_1006142652	3300004479	Soil	MKGNTMTNVNITATNEPQKPANPAPATPQQQTQGNPAKPADKPSEQQK*
Ga0070658_117001761	3300005327	Corn Rhizosphere	MTNIPVSASDDTVKPATPVTPQQQTQGNPPKPADKPSEQQK*
Ga0070690_1008197102	3300005330	Switchgrass Rhizosphere	MTTVPVSASEPQKPATPATPQQQTQGNPPKPADKPIEQQK*
Ga0070691_104107582	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MTTVPVSAAEPQTPATPATPQQQTQSNPPKPADKPSEQQK*
Ga0070709_104910332	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTNVTNSASDPQKPAAPATPQQQTQSNPQPQGSPAKPADKPSEQQK*
Ga0070709_110499892	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTTVPISASEPQKPANPATPQQQTQGNPPKPADKPSEQQK*
Ga0066689_109402752	3300005447	Soil	MTNVPISASEPQKPANPAPATPQQQTQGNPNPKPVDKPSEQQK*
Ga0070698_1008635543	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VLSAKDITMTNVPISASEPQKPAAPAPATPQQQTQANPKPVEKPAEQQK*
Ga0070672_1007746322	3300005543	Miscanthus Rhizosphere	MTNASEQEKPATPAPTPQQQTQGNPPKPADKPSEQQK*
Ga0070686_1007023394	3300005544	Switchgrass Rhizosphere	KDFSMTIVPVSASEPQKPATPATPQQQTQGNPPKPADKPIEQQK*
Ga0070665_1001683904	3300005548	Switchgrass Rhizosphere	MTTVPVSASEPQAPATPQQQTHATPPNPADKPSEQQK*
Ga0068855_1005901541	3300005563	Corn Rhizosphere	MTDFKISGSTEQKPVNNPAPANPQQTQANPPKTDNKPSEQQK*
Ga0068854_1019743272	3300005578	Corn Rhizosphere	VNITASNEPQKPTPATPQQQTQGNPPKPADKPSEQQK*
Ga0068852_1014591032	3300005616	Corn Rhizosphere	MTDIKISGSTEQKPVNNPAPANPQQTQANPPKTDNKPSEQQK*
Ga0068858_1011430223	3300005842	Switchgrass Rhizosphere	MTIVPVSASEPQKPATPVTPQQQTQGNPPKPADKPSEQQK*
Ga0068858_1012404591	3300005842	Switchgrass Rhizosphere	VSAAEPQAPTTPASPQQQTQANPPKPADKPSEQQK*
Ga0070717_103084012	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTNVTNSASDSQKPAAPATPQQQTQSNPQPQGSPAKPADKPSEQQK*
Ga0066652_1003937271	3300006046	Soil	KDIAMTNVPISASEPQKPASPAPATPQQQTQANPKPVEKLAQQQK*
Ga0075024_1001530142	3300006047	Watersheds	MTTVPISASEPQKPATPATPQQQTQGNPPKPADKPSEQQK*
Ga0075024_1006185883	3300006047	Watersheds	KRFFYMTNAPVSAFNDTPKPATPAPRQQQTQTNPPKPADKPSEQQK*
Ga0075363_1004434652	3300006048	Populus Endosphere	MTTVPVSTSEPQTPATPATPQQQTQGNPPKPADKPSEQQK*
Ga0075367_101659802	3300006178	Populus Endosphere	MTTVPVSAAEPQAPTTPATPQQQTQGNPPKPADKPSEQQK*
Ga0075367_103893084	3300006178	Populus Endosphere	MTMTDVKISTSTEQKPATTPAPATPQQQTQSNPPKTGDKPNEQQK*
Ga0075367_109231223	3300006178	Populus Endosphere	MTIVPVSASEPQKPATPVTPQQQTQGNPPKPADKPGEQQK*
Ga0075370_106091492	3300006353	Populus Endosphere	MTIVPVSASEPQKPATPATPQQQTQGNPPKPADKPSEQQK*
Ga0066653_103046581	3300006791	Soil	MTNVPISASEPQKPASPAPATPQQQTQANPKPVEKLAQQQSKLA
Ga0075428_1010047212	3300006844	Populus Rhizosphere	MTNVSINASNEPQKPTTPASTPTPQQQTQGTPKPASDKPSEQQK*
Ga0075425_1018469642	3300006854	Populus Rhizosphere	MTTVPVSASEPQKPASPATPQQQTQGNPPKPADKPSEQQK*
Ga0068865_1013349331	3300006881	Miscanthus Rhizosphere	VPVSAAEPQTPATPATPQQQTQGNPPKPVDKPSEQQK*
Ga0075424_1015936482	3300006904	Populus Rhizosphere	MTNVPISASEPQKPASPAPATPQQQTQDNPKPATKPAEQQK*
Ga0115930_10358863	3300008886	Micrasterias Crux-Melitensis (Mzch 98) Associated	MTNIPVTASGDQKPETPATPQQQTQNPPKPADKPSEQQK*
Ga0066710_1025343892	3300009012	Grasslands Soil	MTNVPISASEPQKPANPAPATPQQQTQGNPNPKPVD
Ga0066710_1033827401	3300009012	Grasslands Soil	DTTTMTNVPISASEPQKPANPAPATPQQQTQGNPNPKPVDKPSEQQK
Ga0105095_100712873	3300009053	Freshwater Sediment	MTNVTISASEFQKPASRAPATPQQQTQGTPVKPADKPSEQQK*
Ga0111539_108903994	3300009094	Populus Rhizosphere	MTNTPVANNDPKPATPATPQQQNQGTPKPADKPSEQQK*
Ga0105245_113502892	3300009098	Miscanthus Rhizosphere	MTNVPVSGSNPDQKPSTPATPQQQTQANPPKPADKPSEQQK*
Ga0105245_118075473	3300009098	Miscanthus Rhizosphere	VFRKGNTMTNVNITASNEPQKPTPATPQQQTQGNPPKPADKPSEQQK*
Ga0105245_129661891	3300009098	Miscanthus Rhizosphere	MTTVPVSASEPQKPATPATPQQQTQGNPPKPVDKPSEQQK*
Ga0105237_120159651	3300009545	Corn Rhizosphere	MKGFSMTTVPISASEPQKPATPATPQQQTQGNPPKPADKPSEQQK*
Ga0105249_102188012	3300009553	Switchgrass Rhizosphere	MTTVPVSAAEPQTPATPATPQQQTQGNPPKPADKPSEQQK*
Ga0099796_102783282	3300010159	Vadose Zone Soil	MTTVPVSASEPQKPATPATPQQQTQGNPPKPADKPNEQQK*
Ga0134125_105310135	3300010371	Terrestrial Soil	MTDVKISASTEQKPANNPAPATPQQTQTNPPKTDNKPSEQQK*
Ga0105239_115479162	3300010375	Corn Rhizosphere	MITVPVSAAEPQAPTTPASPQQQTQANPPKPADKPSEQQK*
Ga0134126_104540383	3300010396	Terrestrial Soil	MTNVTNSASDPQKPATQAPATPQQQTQSNPQPAKPADKPSEQQK*
Ga0134122_103930802	3300010400	Terrestrial Soil	MTTVPVSAAEPQTPATPATPQQQTQGNPPKPADKPIEQQK*
Ga0137442_11085372	3300011414	Soil	MTNVTISASEPQKPASAAPVTPQQQTQGAPAKSADKPSEQQK*
Ga0150985_1025187973	3300012212	Avena Fatua Rhizosphere	SFHKKDMTMTNIPVSASDDTVKPATPVTPQQQTQGNPPKPADKPSEQQK*
Ga0137449_11039172	3300012227	Soil	MMNVTISASEPPKPASPAPVTMQQQTEGAPAKPADKPSEQQN*
Ga0137366_109801412	3300012354	Vadose Zone Soil	MTNAPVPSSGDQKPATPATPQQQTQTNPPKPADKPSEQQK*
Ga0150984_1009035481	3300012469	Avena Fatua Rhizosphere	NKSQVILKGITMTDPIRVPVTASGDNKPSTPATPQQQTQGNPPKPADKPSEQQK*
Ga0137407_105671951	3300012930	Vadose Zone Soil	IPVTASSDQKPATPATPQQQTQAPAPKPADKPNEQQK*
Ga0164303_111133711	3300012957	Soil	TVPISASEPQKPTTPAPQQQTQGNPPKPADKPIEQQK*
Ga0164302_101722222	3300012961	Soil	MTTVPVSAAEPQTPATQATPQQQTQGNPPKPADKPSEQQK*
Ga0164309_110835042	3300012984	Soil	MTTVPIAASEPQKPATLSPAVTPQQQTQGNPPKPADKPSEQQK*
Ga0075325_10131082	3300014270	Natural And Restored Wetlands	MTNVNISASEPQKPANPSPATPQQQTQGSPAKPADKPGEQQK*
Ga0075331_10786102	3300014310	Natural And Restored Wetlands	MTNVNISASEPQKPANPSPATPQQQTQGTPAKPTDKPGEQQK*
Ga0075355_11154242	3300014322	Natural And Restored Wetlands	MYSKNKTQVFLKGITMTDPIIVPVSASGDNKPATPTTPQQQTQANPPKPADKPSEQQK*
Ga0167637_10033112	3300015087	Glacier Forefield Soil	MTDTPVTGSTPEQKPAAAPATPQQQNQGSPKPADTKPNEQQK*
Ga0137409_111900931	3300015245	Vadose Zone Soil	NVPISASEPQKPASPAPATPQQQTQGNPKPADKPSEQQK*
Ga0163161_111851151	3300017792	Switchgrass Rhizosphere	HDKDISMTNASEQEKPATPAPTPQQQTQGNPPKPADKPSEQQK
Ga0190266_100119733	3300017965	Soil	MTNASEQEKPATPAPTPQQQTQGNPPKPADKPSEQQK
Ga0190266_105940621	3300017965	Soil	MTNIPVSASNNEQKPATPATPQQQTQSNPPKPADKPSEQQK
Ga0190266_106825202	3300017965	Soil	MTDVKISASEPQKPATPATAPATPQQQNQGTPKPADKPSEQQK
Ga0187805_102788722	3300018007	Freshwater Sediment	MVFRYFSKEFTMTNMPNSSNDQESVTSPTPQQQTQNNPPKPADKPVEQQK
Ga0190270_133636191	3300018469	Soil	MTNIPVSASSNEQKPATPATPQQQTQGNPPKPADKPSEQQK
Ga0190271_117130852	3300018481	Soil	MTNIPVTASGNEQKPVTPANPQQQTQGNPPKPADKPSEQQK
Ga0190264_123552051	3300019377	Soil	MTNTPAFANDEKKPATPATPQQNQGAPKPAEKQGEQQK
Ga0194035_10106663	3300020167	Anoxic Zone Freshwater	MTNVPVSGSTPEQKPAVAPATPQQQTQGTPKPAETAKPNEQQK
Ga0210400_100907114	3300021170	Soil	MTNVKISAFEPQKPVDPTPATPQQQTQSNPQKPAGKPGEQQK
Ga0210405_100654763	3300021171	Soil	MTSVTISASEPQKPANPTPATPQQQTQSNPTKPLDKPNEQQK
Ga0210384_118334301	3300021432	Soil	MTNVKISASEPQKPADPTAAAPQQQTQSNPQKPAGKPGEQQK
Ga0247746_10629901	3300022886	Soil	MTTVPVSAAEPQTPATPATPQQQTQGNPPKPVDKPSEQQK
(restricted) Ga0233424_102122592	3300023208	Freshwater	LVATGAIAMTNVNLSTKEKKPANPPASPQQTQGNPPKPAEKPAEQQK
Ga0207659_105615041	3300025926	Miscanthus Rhizosphere	MTTVPVSAAEPQTPATPATPQQQTQGNPPKPVDKPSE
Ga0207711_100172277	3300025941	Switchgrass Rhizosphere	MTTVPVSASEPQKPATPATPQQQTQGNPPKPADKPIEQQK
Ga0207667_104953745	3300025949	Corn Rhizosphere	MTDFKISGSTEQKPVNNPAPANPQQTQANPPKTDNKPSEQQK
Ga0207708_106313312	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MTTVPVSAAEPQTPATPATPQQQTQGNPPKPADKPSEQQK
Ga0256867_103454281	3300026535	Soil	MTNVNISASEPQKPANPSPATPQQQTQGNPAKPADKPGEQQK
Ga0209577_102734272	3300026552	Soil	MTNVPISASEPQKPANPAPATPQQQTQGNPNPKPVDKPSEQQK
Ga0179587_110519651	3300026557	Vadose Zone Soil	MTSIPISASEPQKPASPTPATPQQQTQANPKPADKPVQQQK
Ga0209515_100733615	3300027835	Groundwater	MTNAPVANSDPKPATPASPQQQTQGTPPKPADKPSEQQK
Ga0209488_101255212	3300027903	Vadose Zone Soil	MTNVPISASEPQKPASPAPATPQQQTQANPKPVEKPAQQQK
Ga0207428_107498953	3300027907	Populus Rhizosphere	MTNVTISASEPQKPATPAPATPQQQTQAAPKPADKPSEQQK
Ga0268264_103826151	3300028381	Switchgrass Rhizosphere	MTTVPVSAAEPQTPATPATPQQQTQGNPPKPVDKPSEQQ
Ga0308309_113965422	3300028906	Soil	ISASEPQKPADPTPAIPQQQTQSNLQKPAGKPGEQQK
Ga0308178_10959272	3300030990	Soil	MTDVKISASAEQKPANNPAPATPQQQTQANPPKPADKPSDQQK
Ga0308178_11431393	3300030990	Soil	GNTMTIINITSSNEPQKPANPAPAMPQQTQGTPSKPADKPSEQQK
Ga0170834_1128606771	3300031057	Forest Soil	MTNVTISASEPQKPTNPTPATPQQQTQDNPAKPADKPAQQQK
Ga0308181_10874441	3300031099	Soil	NVTISANEPQKPANPSQATPQQQTQGNPPKPADKPEQQK
Ga0299913_109664101	3300031229	Soil	MTNVNISASEPQKPANPSPATPQQQTQGTPAKPTDKPGEQQK
Ga0308179_10495721	3300031424	Soil	TISANEPHKPSNPSQATNQQQTQGNPPKPADKPEQQK
Ga0307505_102684622	3300031455	Soil	MTNIPVSNSTPEQKPATPAAPQQTQGNPPKPADKPNEQQK
Ga0170818_1034250491	3300031474	Forest Soil	MTTVQISASEPQKPATPATPQQQTQGNPPKPADKPSEQQK
Ga0310886_100606824	3300031562	Soil	VTIINITASNEPQKPANLAPATPQQTQGTPSKPADKPSEQQK
Ga0310813_119311722	3300031716	Soil	VLNLFIKDITVTNISITASESQKPATPSPTTPQQQTQGNPPKPADKPSEQ
Ga0326597_113825121	3300031965	Soil	MTNVVISASEPQKPANPAPATPQQQTQGNPKPAEKQGEQQK
Ga0372943_0577295_506_628	3300034268	Soil	MTNVPISASDPQKPATPATPQQQTQGNPPKPADKPSEQQK
Ga0370548_028259_25_153	3300034644	Soil	MTNVTISANEPQKPANPSQATPQQQTQGNPPKPADKPSEQQK