Metagenome / Metatranscriptome Family F087424

Overview

Basic Information

• Family ID: F087424
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 110
• Average Sequence Length: 48 residues
• Representative Sequence: VDVFDPVAYAASLLVIVTSCALAVSVPALRAARIDPIATLRKD
• Number of Associated Samples: 90
• Number of Associated Scaffolds: 110

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 6.67 %
• % of genes near scaffold ends (potentially truncated): 84.55 %
• % of genes from short scaffolds (< 2000 bps): 88.18 %
• Associated GOLD sequencing projects: 85
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (74.545 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (16.364 % of family members)
• Environment Ontology (ENVO): Unclassified (25.455 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (55.455 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 52.11%
  β-sheet: 0.00%
  Coil/Unstructured: 47.89%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13460	NAD_binding_10	10.00
PF12704	MacB_PCD	4.55
PF12833	HTH_18	4.55
PF03551	PadR	2.73
PF07676	PD40	2.73
PF02687	FtsX	2.73
PF03786	UxuA	1.82
PF00679	EFG_C	1.82
PF01161	PBP	1.82
PF13419	HAD_2	1.82

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.73
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.73
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.73
COG0597	Lipoprotein signal peptidase	Cell wall/membrane/envelope biogenesis [M]	1.82
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.82
COG1881	Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family	General function prediction only [R]	1.82
COG1312	D-mannonate dehydratase	Carbohydrate transport and metabolism [G]	1.82
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.82
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.91
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.91

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.55 %
Unclassified	root	N/A	25.45 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.55 %
Unclassified	root	N/A	25.45 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.55 %
Unclassified	root	N/A	25.45 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	20.91 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.82 %
Unclassified	root	N/A	25.45 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.55 %
Unclassified	root	N/A	25.45 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.73 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.91 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Unclassified	root	N/A	25.45 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3.64 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.91 %
Unclassified	root	N/A	25.45 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	3.64 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.91 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Unclassified	root	N/A	25.45 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.64 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.82 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	0.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.91 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.91 %
Unclassified	root	N/A	25.45 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	3.64 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300002070|JGI24750J21931_1045189	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	677
3300002073|JGI24745J21846_1008520	All Organisms → cellular organisms → Bacteria	1156
3300002124|C687J26631_10000662	All Organisms → cellular organisms → Bacteria	14140
3300004156|Ga0062589_101091528	All Organisms → cellular organisms → Bacteria	754
3300004156|Ga0062589_101321069	All Organisms → cellular organisms → Bacteria	698
3300004463|Ga0063356_101431617	All Organisms → cellular organisms → Bacteria	1019
3300004463|Ga0063356_104779318	All Organisms → cellular organisms → Bacteria	582
3300004463|Ga0063356_105240460	All Organisms → cellular organisms → Bacteria	557
3300004463|Ga0063356_105726322	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	533
3300004480|Ga0062592_100581350	All Organisms → cellular organisms → Bacteria	947

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.27%
Host-Associated	Host-Associated	42.73%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.18%
Plants	Host-Associated → Plants	42.73%
Terrestrial	Environmental → Terrestrial	49.09%

Category

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.91%
Freshwater	Environmental → Aquatic → Freshwater	5.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.64%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.18%
Roots	Host-Associated → Plants → Roots	0.91%
Sediment	Environmental → Aquatic → Sediment	2.73%
Soil	Environmental → Terrestrial → Soil	48.18%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.82%
Ice	Environmental → Aquatic → Freshwater → Ice	0.91%
Loam	Environmental → Terrestrial → Soil → Loam	4.55%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.55%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.27%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.91%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	16.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.91%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	3.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	16.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.73%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.82%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300002070	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4	Host-Associated
3300002073	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4	Host-Associated
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24750J21931_10451892	3300002070	Corn, Switchgrass And Miscanthus Rhizosphere	IVLRATPLAAEIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
JGI24745J21846_10085201	3300002073	Corn, Switchgrass And Miscanthus Rhizosphere	VLRATPLAAEIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
C687J26631_100006622	3300002124	Soil	VAYAASALVIATACLIAMSVPILRAASVDPIATLRKD*
Ga0062589_1010915282	3300004156	Soil	SVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0062589_1013210692	3300004156	Soil	LMASPFASEIGDVVHVFDPLAYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0063356_1002577511	3300004463	Arabidopsis Thaliana Rhizosphere	AGTGLAAAVATLLLSTPAASEIGSLVHVLDPVAYITGVLVIASACLLASSLPMLRAARIDPIAALRNE*
Ga0063356_1014316172	3300004463	Arabidopsis Thaliana Rhizosphere	AIVLMATPVAAEIGSLVNVFDPVAYTASLLCIGTACVLAASIPALRAARIDPIATLRQD*
Ga0063356_1047793182	3300004463	Arabidopsis Thaliana Rhizosphere	DPVAYAASALVIVASCMLAVSVPALRAARIDPIVTLRMD*
Ga0063356_1052404601	3300004463	Arabidopsis Thaliana Rhizosphere	DPLAYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0063356_1057263222	3300004463	Arabidopsis Thaliana Rhizosphere	SPFASEIGDAVHVFDPLAYFASVLVIAAACLLGVSVPALRAARIDPIAALRKD*
Ga0062592_1005813502	3300004480	Soil	DVFDPAAYAASALVIATACLIAVSVPTLRAARIDPIATLRKD*
Ga0065712_107490441	3300005290	Miscanthus Rhizosphere	VLDPAAYGVSVITIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0065705_108166283	3300005294	Switchgrass Rhizosphere	AASEIGGVVKVFDPVAYAASLLVIITSCALAVSVPALRAARIDPIAMLRKD*
Ga0070676_116107101	3300005328	Miscanthus Rhizosphere	DVFDPVAYAGSLLVIVTSCALAVSVPALRATRIDPIATLKKE*
Ga0070668_1014433791	3300005347	Switchgrass Rhizosphere	VDVFDPVAYAASLLVIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0070675_1003041391	3300005354	Miscanthus Rhizosphere	VQVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD*
Ga0070673_1023211391	3300005364	Switchgrass Rhizosphere	VAIVLMATPAASETGGVIDVFDPVAYAASALVIATACLIAVSVPTLRATRIDPIATLRKD
Ga0070678_1014499982	3300005456	Miscanthus Rhizosphere	GASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0070704_1005866932	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	IGDWVHVLDPVAYGTSALTIVMSSALAVSVPALRAARIDPIATLRKD*
Ga0068857_1004499243	3300005577	Corn Rhizosphere	PVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0068854_1018968712	3300005578	Corn Rhizosphere	PGASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0070702_1001511004	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	DPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0066905_1016310452	3300005713	Tropical Forest Soil	ALDDSGEVGRMIHVLDPIPYVASALIIAMACLLATSIPTLRAARIDPIATLRKD*
Ga0068861_1015995842	3300005719	Switchgrass Rhizosphere	AGAGLAAALAILLLTLPGASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0075427_100367811	3300006194	Populus Rhizosphere	YATSALVIVTACLLAALVPTWRAVRIDPIATLRQQ*
Ga0068871_1021716491	3300006358	Miscanthus Rhizosphere	AILLAAVDSGIGGIVDVFDPVAYLASVLVIVTSCAVAVLVPALRASRIDPIATLRKD*
Ga0074054_118818402	3300006579	Soil	IASVLLIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0079222_124869662	3300006755	Agricultural Soil	VLTATATELQGWMHVLDPVAYIASVLLIATSCVVAVSVPALRAVRIDPIATLGKD*
Ga0075428_1004298111	3300006844	Populus Rhizosphere	TVNVLDPLAYVSSTLVIVTACLIAVSVPTLRAVRVDPITTLRKE*
Ga0075430_1009715643	3300006846	Populus Rhizosphere	VKVFDPVAYAASLLVIITSCALAVSVPALRAARIDPIAMLRKD*
Ga0075431_1005698101	3300006847	Populus Rhizosphere	AVATLLLSTPAASEIGSLVHVLDPVAYITGVLVIASACLLASSLPMLRAARIDPIAALRNE*
Ga0075433_110506622	3300006852	Populus Rhizosphere	AYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0075433_112997601	3300006852	Populus Rhizosphere	AYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0079215_106319071	3300006894	Agricultural Soil	AAGVLVIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0075436_1010513032	3300006914	Populus Rhizosphere	AAGAGLAAALSILLLALPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0079218_138083351	3300007004	Agricultural Soil	GLAAGGGLAAAVAIVLTATPLAAEIGDLDVLDPVAYGASVLLIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0099829_117564622	3300009038	Vadose Zone Soil	DIVHVFDPVAYAASILVIVTSCVLAVSVPALRAARIDPIATLRQD*
Ga0105106_106910212	3300009078	Freshwater Sediment	VAYAASLLVIVTSCVLAVSVPALRAARIDPIATLRRD*
Ga0105106_113755251	3300009078	Freshwater Sediment	VAYAAGLLVIVTSCALAVSVPALRAARIDPIATLRRD*
Ga0111539_100756691	3300009094	Populus Rhizosphere	VLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0111539_102697873	3300009094	Populus Rhizosphere	AVATMLMAVSDGEVGTMIKVFDPTAYTTSVLVIVVSCALAATVPALRAARIDPIATLRRE
Ga0111539_115149202	3300009094	Populus Rhizosphere	AAALAILLLTLPGAAEIADWVHVLDPAAYGAGIVTILLSCALAVSIPALRAARIDPIATLRKD*
Ga0111539_117293751	3300009094	Populus Rhizosphere	AGLAAALSILLLALPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPARRAARIDPIATLRKD*
Ga0105091_104608252	3300009146	Freshwater Sediment	VAYAASLLVIVTSCALAVSVPALRAARIDPMVTLRKD*
Ga0114129_109838833	3300009147	Populus Rhizosphere	DPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0114129_116346621	3300009147	Populus Rhizosphere	VAYAASLLIIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0105243_125971561	3300009148	Miscanthus Rhizosphere	GSELGAWVDVFDPVAYATSLLLIVAASMIATVFPALRAASLDPIATLRID*
Ga0111538_141344472	3300009156	Populus Rhizosphere	EIGDIVHVFDPLAYAASVLVIAAACLLAVSVPALRAARIDPIATLRND*
Ga0075423_111661072	3300009162	Populus Rhizosphere	GIVLIAIPGASSPLSQIVHVFDPVAYAASLICIVAACALAALIPAMRAAGIAPVDALRQD
Ga0075423_125638022	3300009162	Populus Rhizosphere	PAAYVTCVLVIASACLLAASLPTLRAARIDPIAALRNE*
Ga0105249_106492851	3300009553	Switchgrass Rhizosphere	VAYAGSVLVIVTSCALAASVPAWRAARIDPITTLRRD*
Ga0134111_102227241	3300010329	Grasslands Soil	SASLLVIVTSCALAVSVPALRAACIDPIATLKKD*
Ga0126377_131677612	3300010362	Tropical Forest Soil	LAAGGGLAIAVAIVLTATATELRGWMHLLDPVAYIACVLVIVTSCVLAVSVPALRVARIDPIATLRKD*
Ga0126383_108202791	3300010398	Tropical Forest Soil	MYSIFDPVAYAASLLVIVTSCGLAVWIPSLRAARIDPFETLRKD*
Ga0105246_101023445	3300011119	Miscanthus Rhizosphere	VFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0137374_101591243	3300012204	Vadose Zone Soil	VAYSASLLVIVTSCALAVSVPALRAACIDPIATLKKD*
Ga0157350_10108391	3300012499	Unplanted Soil	EIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD*
Ga0157302_103116182	3300012915	Soil	LPGASEIGDWVHVLDPAAYGVSVITIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0157375_102404693	3300013308	Miscanthus Rhizosphere	PVAYGTSALTIVMSSALAVSVPALRAARIDPIATLRKD*
Ga0134075_104152172	3300014154	Grasslands Soil	VAYSASLLVIVTSCALAVSVPALRAACIDPIATLRKD*
Ga0157380_132446901	3300014326	Switchgrass Rhizosphere	DPSAYATSLLVIVVSCTLAAAVPALRAARIDPIATLRRE*
Ga0173478_106869012	3300015201	Soil	VWVDVFDPVAYAASLLVIVTSCALAVSVPALRAARIDPIATLRKD*
Ga0180073_11110331	3300015256	Soil	IPDMVQVFDPVAYAASLLVIVTSCVLAVSVPALRAARIDPIATLRKD*
Ga0180121_101224581	3300017695	Polar Desert Sand	ATVLMAIPAASQIRDIVHIFDPVAYAATLLCIVMACALAALIPALRAARIDPIATLRQD
Ga0184626_103545491	3300018053	Groundwater Sediment	GDIVRVFDPLAYTVSLLCIVTACALAASIPALRAARIDPIATLRQD
Ga0184637_105319121	3300018063	Groundwater Sediment	VLMATPAASEIGNLVHVFDPVAYAASLLVIVTACVLAASVPALRAARIDPIATLRKD
Ga0190272_115205552	3300018429	Soil	SEIGDLKVLDPLAYGASVLVIVTSCVLAVSVPALRAARIDPIATLRQD
Ga0190272_117891572	3300018429	Soil	PAASQIGAVVRVFDPVAYAASLLLVVTTCTLAASIPAWRAALIDPIATLRND
Ga0190272_120966752	3300018429	Soil	GGIVHVFDPVAYAASLACIVTACVFAGFIPALRAARIDPMKTLRQE
Ga0190275_109613301	3300018432	Soil	AGGVIAAALAIVLMTTPVAAEIGDSVRVFDPVAYLASLLVIVTSCALAVSVPALRASRIDPIATLRKD
Ga0190270_110230991	3300018469	Soil	PIAAEIGGSVNVFDPVAYAAGLLVIVSSCVVAVSVPTWRAARIDPIATLRKD
Ga0190270_111571281	3300018469	Soil	LDPVAYASGLLVIVTSCALAVSVPALRAARIDPIATLRQD
Ga0190264_106690111	3300019377	Soil	AASQIGSVVHVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0210382_100173983	3300021080	Groundwater Sediment	VAYSASLLVIVTSCALAVSVPALRAACIDPIATLKKD
Ga0207657_102144974	3300025919	Corn Rhizosphere	LLLTLPGASEIGDWVHVLDPAAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0207659_114935412	3300025926	Miscanthus Rhizosphere	VFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0207701_115383882	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	ASEIGNLVQVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0207669_103825963	3300025937	Miscanthus Rhizosphere	DGSEIHGWVDVFDPVAYATSLLVIVTASICATLVPALRAACIDPIATLRQD
Ga0207704_109280132	3300025938	Miscanthus Rhizosphere	AEMGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD
Ga0207678_114593671	3300026067	Corn Rhizosphere	PVAYSASALVIATACLIAVSVPTLRATRIDPIATLRKD
Ga0207708_100911085	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VAIVLRATPLAAEMGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD
Ga0207675_10000807915	3300026118	Switchgrass Rhizosphere	IVLRATPLAAEIGDSVDVFDPVAYAASALIIATACLIAVSIPALRAARIDPIATLRKD
Ga0209131_13697242	3300026320	Grasslands Soil	YAASLLVIVTSCALAVSVPALRAACIDPIATLRKD
Ga0209998_100444972	3300027717	Arabidopsis Thaliana Rhizosphere	MATPAASEIGNVVHVFDPVAYLASALIIAAASLLGVAVPALRAARIDLIATLRRD
Ga0209382_113772493	3300027909	Populus Rhizosphere	PAASAIGDIVRVFDPVAYALSGLVVVTACALAAWVPALRACRLDPVATLRQD
Ga0209705_100788942	3300027979	Freshwater Sediment	VAYAASLLVIVTSCVLAVSVPALRAARIDPIATLRRD
Ga0247824_110139152	3300028809	Soil	YWCAHGGVIDVFDPVAYAASALIIATACLIAVSVPTLRAARIDPIATLRKD
Ga0247825_102641982	3300028812	Soil	MATPAAAEIGAVVDIFDPVAYAASALVIATASLIAVSVPTVRATRIDPIEILRKD
Ga0299913_113167191	3300031229	Soil	AASLFGGALIHVYDPVAYTGSLLVIVTACALAAAIPTWRAARIDPIATLRQD
Ga0310887_110239832	3300031547	Soil	AGIGSIVHVFDPMAYTASLLVIVTSCLLAVSVPALRAVRIDPIATLRKE
Ga0310886_101145033	3300031562	Soil	ALAVVLTSAAAEIGSIVHVFDPMAYTASLLVIVTSCLLAVSVPALRAVRIDPIATLRKE
Ga0307468_1022354902	3300031740	Hardwood Forest Soil	VAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0310900_109057892	3300031908	Soil	LAAAVAIVLMTTPIAAEMGDSIDVLDPGAYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0310901_102088951	3300031940	Soil	GDVINVFDPVAYAASALVIATACLIAVSVPTLRAARIDPIATLRKD
Ga0310885_106993221	3300031943	Soil	LMATPMASEIGNLVQVFDPVAYAASLLVIVTSCVLAASVPALRAARIDPIATLRKD
Ga0310884_100214522	3300031944	Soil	DSIDVLDPGAYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0307416_1038836812	3300032002	Rhizosphere	YLASALIIAAASLLGVAVPALRAARIDPIATLRRD
Ga0310897_102494121	3300032003	Soil	TPVAAEIGSLVNVFDPVAYTASLLCIGTACVLAASIPALRAARIDPIATLRQD
Ga0310899_100611071	3300032017	Soil	VHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0310899_101183352	3300032017	Soil	AYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0310890_106459301	3300032075	Soil	PLAYAASALVIATASLIAVSVPTLRAARIEPIAILRKD
Ga0310890_115483391	3300032075	Soil	VAAIVLMSTSLASEIGGVVDVFDPVAYAASLAVIVMSCAIAVSVPALRAARIDPIATLRR
Ga0310895_101329141	3300032122	Soil	IVLMTTPIAVEIGDSIDVLDPGAYAASLLVIVTSCVFAVSLPALRAARIDPIATLRKD
Ga0310895_107828952	3300032122	Soil	SLVNVFDPVAYTASLLCIGTACVLAASIPALRAARIDPIATLRQD
Ga0315910_101353723	3300032144	Soil	EVGMLITVFDPTAYATSLLVIVVSCTLAAAVPALRAARIDPIATLRRE
Ga0310889_101679181	3300032179	Soil	LSILLLALPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0310889_102062071	3300032179	Soil	TPASAEIAAVVDVFDPVAYAASALVIATASLIAVSVPTLRAARIDPIAILRKD
Ga0310889_102159191	3300032179	Soil	LPGAAELGDWVHVLDPVAYGVSVMTIVTSCALAVSVPALRAARIDPIATLRKD
Ga0316622_1004283281	3300033416	Soil	PVAYAASLLVIIMACVLAALVPGLRAARIDSMVALRQE
Ga0364925_0365168_429_542	3300034147	Sediment	VAYAASALVIATASLIAVSVPTVRAARIDPIAILRKD