NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F087321

Metagenome Family F087321

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087321
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 48 residues
Representative Sequence MKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIA
Number of Associated Samples 73
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 79.09 %
% of genes near scaffold ends (potentially truncated) 31.82 %
% of genes from short scaffolds (< 2000 bps) 65.45 %
Associated GOLD sequencing projects 58
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (43.636 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean
(36.364 % of family members)
Environment Ontology (ENVO) Unclassified
(87.273 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(75.455 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76
1Ga0063038_1030692
2Ga0082015_10438451
3Ga0068470_10331092
4Ga0068471_14127012
5Ga0068487_10302333
6Ga0068487_10337594
7Ga0068475_11385953
8Ga0068502_10547092
9Ga0099956_10458642
10Ga0098035_11855432
11Ga0098040_100019063
12Ga0098044_10089438
13Ga0066366_100360072
14Ga0114898_100485314
15Ga0114898_10062851
16Ga0114898_10130449
17Ga0114898_10155017
18Ga0114898_10272326
19Ga0114898_10402311
20Ga0114899_10037185
21Ga0114899_100615911
22Ga0114899_10249387
23Ga0114904_100529611
24Ga0114905_10083925
25Ga0114905_10126299
26Ga0114905_10718095
27Ga0114905_10897023
28Ga0114996_100933219
29Ga0118716_11432582
30Ga0114993_102094681
31Ga0114903_11170931
32Ga0114903_11374801
33Ga0114902_10703261
34Ga0114908_10537342
35Ga0114932_102026625
36Ga0114932_104751732
37Ga0114900_10294081
38Ga0114900_10487172
39Ga0114911_11406901
40Ga0105173_10143964
41Ga0105173_10255352
42Ga0114933_101016882
43Ga0115002_100648375
44Ga0114999_102447581
45Ga0098047_100879871
46Ga0098047_102253543
47Ga0133547_119401912
48Ga0114934_105334451
49Ga0211502_10631451
50Ga0211623_102171023
51Ga0211578_101822273
52Ga0211691_100062002
53Ga0211691_101483022
54Ga0211643_105203711
55Ga0211503_100162068
56Ga0206685_101592912
57Ga0226832_100153044
58Ga0226832_100374554
59Ga0226832_100471525
60Ga0209992_100627476
61Ga0209992_102530693
62Ga0209992_104164732
63Ga0207901_10172432
64Ga0208011_10052978
65Ga0208790_10696792
66Ga0208919_11200453
67Ga0208182_10022681
68Ga0208182_100242210
69Ga0208182_10127179
70Ga0208182_10135915
71Ga0208182_10186435
72Ga0208179_100280113
73Ga0208179_10028461
74Ga0207894_10228562
75Ga0208813_10066669
76Ga0208449_10042611
77Ga0208030_10119488
78Ga0208030_10855872
79Ga0208315_100906111
80Ga0207903_10080884
81Ga0207903_10653762
82Ga0208934_10971962
83Ga0208316_10292432
84Ga0208684_10026581
85Ga0208684_10265691
86Ga0209757_100487254
87Ga0209757_102648492
88Ga0207966_10834933
89Ga0209034_100931212
90Ga0209089_101574603
91Ga0209403_101139466
92Ga0209402_101682431
93Ga0256382_10150004
94Ga0256382_11679232
95Ga0302132_100002738
96Ga0302123_100793974
97Ga0310121_102483483
98Ga0310123_108709091
99Ga0310124_101690381
100Ga0315318_101327942
101Ga0310344_1000139030
102Ga0310344_1000332716
103Ga0310344_100429632
104Ga0310344_110580952
105Ga0310345_100136311
106Ga0310345_102597355
107Ga0310345_109534612
108Ga0310345_112826092
109Ga0310342_1027108412
110Ga0326741_015325_306_458
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.00%    β-sheet: 8.00%    Coil/Unstructured: 56.00%
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5101520253035404550MKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIASequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
56.4%43.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Deep Ocean
Seawater
Marine
Marine Oceanic
Marine
Marine
Marine
Seawater
Marine
Filtered Seawater
Seawater
Hydrothermal Vent Fluids
Diffuse Hydrothermal Vent
Deep Subsurface
22.7%36.4%8.2%4.5%6.4%6.4%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0063038_10306923300003978Diffuse Hydrothermal VentMKHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIA*
Ga0082015_104384513300006090MarineMKIDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDID*
Ga0068470_103310923300006308MarineMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIA*
Ga0068471_141270123300006310MarineMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTREDIA*
Ga0068487_103023333300006315MarineMTLDDVFRIALKHFPLCHVGEDAEGEVVIFTGMMVDDNQELREMTNEDIA*
Ga0068487_103375943300006315MarineMRLDDVFRIALKHFPLCHVGEDVEGEVVIFTGMMVDKNQELREMTDEDIA*
Ga0068475_113859533300006318MarineMTLNEVFQIAQEHFPLCHVGEDSEGEVIIFTGMVRNENSMSELREMTDEDIA*
Ga0068502_105470923300006336MarineMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTREDIT*
Ga0099956_104586423300006411MarineMRLDDVFRIALKHFPLCHVGEDIEGEVVIFTGMMVDDNQELREMTDEDIA*
Ga0098035_118554323300006738MarineMKHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREITVEDLD*
Ga0098040_1000190633300006751MarineMTLDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDID*
Ga0098044_100894383300006754MarineMTLDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDLD*
Ga0066366_1003600723300007283MarineMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDDNQELREMTNEDIA*
Ga0114898_1004853143300008216Deep OceanDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTDEDID*
Ga0114898_100628513300008216Deep OceanMKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELRE
Ga0114898_101304493300008216Deep OceanMKHEDVFKIAIEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTREDIA*
Ga0114898_101550173300008216Deep OceanDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIT*
Ga0114898_102723263300008216Deep OceanDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTHEDIA*
Ga0114898_104023113300008216Deep OceanMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELRE
Ga0114899_100371853300008217Deep OceanMTLDDVFRIALKHFPLCHVGEDVEGEVVIFTGMMVDKNQELREMTDEDIA*
Ga0114899_1006159113300008217Deep OceanMKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTDEDID*
Ga0114899_102493873300008217Deep OceanLKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTHEDIA*
Ga0114904_1005296113300008218Deep OceanMKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMT
Ga0114905_100839253300008219Deep OceanMKHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIT*
Ga0114905_101262993300008219Deep OceanFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTHEDIA*
Ga0114905_107180953300008219Deep OceanMTLDDVFRIALKHFPLCHVGEDSEGEVIIFTGLISEENQELREMTNEDIT*
Ga0114905_108970233300008219Deep OceanMKLDDVFRIALKHFPLCHVGEDIEGEVVIFTGMMVDKNQELREMTDEDIA*
Ga0114996_1009332193300009173MarineMRHEDVFRIAVEHFPLCHVGEDAGGEVIIFTGLVSDENQELREMTHEDIE*
Ga0118716_114325823300009370MarineMTLDDVFRIALKHFPLCHVGEDIEGEVVIFTGMMVDDNQELREMTDEDIA*
Ga0114993_1020946813300009409MarineMKLDDVFRIALKHFPMCHVIEDMEGEVVIFTGLVSDKNQELRDMTHEDIK*
Ga0114903_111709313300009412Deep OceanMNSTRWMSFNRKKPMKHEDVFKIAIEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTREDIA*
Ga0114903_113748013300009412Deep OceanMKLDDVFRIAVEHFPLCHVGEDNGGQVIIFTGMVRDGNTKSELREMTDEDID*
Ga0114902_107032613300009413Deep OceanMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELR
Ga0114908_105373423300009418Deep OceanMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTNEDIT*
Ga0114932_1020266253300009481Deep SubsurfaceLVISTRGHSPDRRSLTLMTLDDVFRIALKHFPLCHVGEDSEGEVVIFTGMMVDKNQELREMTHEDIA*
Ga0114932_1047517323300009481Deep SubsurfaceMTLDDVFRIALEHFPLCHVGEDSEGEVIIFTGMVRNENTMSELREMTDEDIA*
Ga0114900_102940813300009602Deep OceanMKLDDVFRIALKHFPLCHVGEDNGGQVIIFTGMVRDGNTKSELREMTDEDID*
Ga0114900_104871723300009602Deep OceanMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTDEDID*
Ga0114911_114069013300009603Deep OceanLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTDEDID*
Ga0105173_101439643300009622Marine OceanicMKLDDAFRIALEHFPMCHVGEDSEGEVIIFTGMMVGENQELREMTIEDIT*
Ga0105173_102553523300009622Marine OceanicMKHEDVFKIAVEHFPLCHVGEDAEGEVIIFTGLVSDENQELREMTHEDIE*
Ga0114933_1010168823300009703Deep SubsurfaceMTLNEVFQIAQEHFPLCHVGEDSEGEVIIFTGMMVDDNQELREMTHEDIA*
Ga0115002_1006483753300009706MarineMKHEDVFRIAVEHFPLCHVGEDAGGEVVIFTGLVSDENQELREMTHEDIE*
Ga0114999_1024475813300009786MarineMKLDDVFRIALKHFPMCHVIEDMEGEVVIFTGLVSDKNQELREMTHEDIA*
Ga0098047_1008798713300010155MarineRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDID*
Ga0098047_1022535433300010155MarineMTLDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHED
Ga0133547_1194019123300010883MarineMKLDDVFRIALKHFPMCHVIEDMEGEVVIFTGLVSD
Ga0114934_1053344513300011013Deep SubsurfaceMTLNEVFQIAQEHFPLCHVGEDSEGEVIIFTGMVRNENSMSELREMTDED
Ga0211502_106314513300020332MarineHFPLCHVGEDIEGEVVIFTGMMVDDNQELREMTNEDIA
Ga0211623_1021710233300020399MarineMMKHEDVFRIAVEHFPMCHVGEDSEGEVIIFTGLISDENQELREMTDEDIA
Ga0211578_1018222733300020444MarineMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIA
Ga0211691_1000620023300020447MarineMKHEDVFRIAVEHFPMCHVGEDSEGEVIIFTGLISDENQELREMTDEDIA
Ga0211691_1014830223300020447MarineMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTREDIA
Ga0211643_1052037113300020457MarineMKTLDDVFRIALEYFPLCHVGEDIEGQVVIFTGMMIDDNQELREMTNEDIA
Ga0211503_1001620683300020478MarineMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDDNQELREMTNEDIA
Ga0206685_1015929123300021442SeawaterMKIDDVFRIAVEHFPLCHVIQDQEGEVVIFTGMIVDDNETLREMTREDIA
Ga0226832_1001530443300021791Hydrothermal Vent FluidsMTLDDVFRIALKHFPLCHVGEDAEGEVVIFTGMMVDDNQELREMTNEDIA
Ga0226832_1003745543300021791Hydrothermal Vent FluidsMRLDDVFRIALKHFPLCHVGEDVEGEVVIFTGMMVDKNQELREMTDEDIA
Ga0226832_1004715253300021791Hydrothermal Vent FluidsMRLDDVFRIALKHFPLCHVGEDVEGEVVIFTGMMV
Ga0209992_1006274763300024344Deep SubsurfaceMTLNEVFQIAQEHFPLCHVGEDSEGEVIIFTGMMVDDNQELREMTHED
Ga0209992_1025306933300024344Deep SubsurfaceSPDRRSLTLMTLDDVFRIALKHFPLCHVGEDSEGEVVIFTGMMVDKNQELREMTHEDIA
Ga0209992_1041647323300024344Deep SubsurfaceMTLDDVFRIALEHFPLCHVGEDSEGEVIIFTGMVRNENTMSELREMTDEDIA
Ga0207901_101724323300025045MarineMRHEDVFRIAVEHFPLCHVGEDAEGEVVIFTGLVSDENQELREMTHEDIK
Ga0208011_100529783300025096MarineMTLDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDID
Ga0208790_106967923300025118MarineMTLDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDLD
Ga0208919_112004533300025128MarineLKHFPLCHVGEDVEGEVVIFTGMMVDKNQELREMTDEDIA
Ga0208182_100226813300025251Deep OceanMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREM
Ga0208182_1002422103300025251Deep OceanMKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTDEDID
Ga0208182_101271793300025251Deep OceanMKHEDVFKIAIEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTREDIA
Ga0208182_101359153300025251Deep OceanMKHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIT
Ga0208182_101864353300025251Deep OceanHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIT
Ga0208179_1002801133300025267Deep OceanMKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIT
Ga0208179_100284613300025267Deep OceanMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDE
Ga0207894_102285623300025268Deep OceanMKIDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDID
Ga0208813_100666693300025270Deep OceanMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIT
Ga0208449_100426113300025280Deep OceanHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTHEDIA
Ga0208030_101194883300025282Deep OceanFPLCHVGEDTEGEVVIFTGMMVDENQELREMTHEDIA
Ga0208030_108558723300025282Deep OceanMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIT
Ga0208315_1009061113300025286Deep OceanMTLDDVFRIALKHFPLCHVGEDVEGEVVIFTGMMVDKNQELREMTDEDIA
Ga0207903_100808843300025287Deep OceanMKHEDVFRIAVEHFPLCHVGEDAGGEVIIFTGLVSDDNQELREMTHEDIA
Ga0207903_106537623300025287Deep OceanMKLDDAFRIALEHFPMCHVGEDSEGEVIIFTGMMVGENQELREMTIEDIT
Ga0208934_109719623300025293Deep OceanMKLDDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIT
Ga0208316_102924323300025296Deep OceanMTLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTDEDID
Ga0208684_100265813300025305Deep OceanFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTHEDIA
Ga0208684_102656913300025305Deep OceanLKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIT
Ga0209757_1004872543300025873MarineMKIDDVFRIAVGHFPLCHVIQDQEGEVVIFTGMIVDDNETLREITVEDLD
Ga0209757_1026484923300025873MarineMKHEDVFRIAVEHFPLCHVGEDAEGEVVIFTGLVSDENQEL
Ga0207966_108349333300026119MarineMKLDDAFRIALEHFPMCHVGEDSEGEVIIFTGMMVGDNQELREMTIEDIT
Ga0209034_1009312123300027755MarineMTLNEVFQIAQEHFPLCHVGEDVEGEVVIFTGMMVDKNQELREMTDEDIA
Ga0209089_1015746033300027838MarineMKHEDVFRIAVEHFPLCHVGEDAGGEVIIFTGLVSDENQELREMTHEDIE
Ga0209403_1011394663300027839MarineMKHEDVFRIAVEHFPLCHVGEDAGGEVVIFTGLVSDENQELREMTHEDIE
Ga0209402_1016824313300027847MarineMKLDDVFRIALKHFPMCHVIEDMEGEVVIFTGLVSDKNQELREMTHEDIA
Ga0256382_101500043300028022SeawaterMTLDDVFRIALEHFPLCHVGEDTEGEVVIFTGMMVDKNQELREMTHEDIA
Ga0256382_116792323300028022SeawaterMKLDDVFRIALKHFPLCHVGEDTEGEVVIFTGMMVDENQELREMTNEDIA
Ga0302132_1000027383300031605MarineMKLDDVFRIALKHFPMCHVIEDMEGEVVIFTGLVSDKNQELRDMTHEDIK
Ga0302123_1007939743300031623MarineMRHEDVFRIAVEHFPLCHVGEDAGGEVIIFTGLVSDENQELREMTHEDIE
Ga0310121_1024834833300031801MarineMKLDDVFRIALKHFPMCHVIEDMEGEVVIFTGLVSDKNQELRDMTHEDIA
Ga0310123_1087090913300031802MarineMKLDDAFRIALEHFPMCHVGEDSEGEVIIFTGMMVGDNQ
Ga0310124_1016903813300031804MarineRIALKHFPMCHVIEDMEGEVVIFTGLVSDKNQELRDMTHEDIA
Ga0315318_1013279423300031886SeawaterMKIDDVFRIAVEHFPLCHVIQDQEGEVVIFTGMIVDDNETLREMTHEDIT
Ga0310344_10001390303300032006SeawaterMRLDDVFRIALKHFPLCHVGEDVEGEVVIFTGMMVDK
Ga0310344_10003327163300032006SeawaterMTLDDVFRIALEHFPLCHVGEDIEGEVVIFTGMMVDENQKLREMTNEDIA
Ga0310344_1004296323300032006SeawaterMTLNEVFQIAQEHFPLCHVGEDSEGEIIIFTGMVRNENSMSELREMTDEDIA
Ga0310344_1105809523300032006SeawaterMTLDDVFRIALKHFPLCHVGEDIEGEVVIFTGMMVDDNQELREMTDEDIA
Ga0310345_1001363113300032278SeawaterRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTHEDIA
Ga0310345_1025973553300032278SeawaterMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQEL
Ga0310345_1095346123300032278SeawaterMMKHEDVFRIAVEHFPMCHVGEDSEGEVIIFTGLISDENQELREMTHEDIA
Ga0310345_1128260923300032278SeawaterMRHEDVFRIAVEHFPLCHVGEDSEGEVIIFTGLISDENQELREMTNEDIT
Ga0310342_10271084123300032820SeawaterMRLDDVFRIALKHFPLCHVGEDAEGEVVIFTGMMVDDNQELREMTNEDIA
Ga0326741_015325_306_4583300034654Filtered SeawaterMTLYEVFRIAQEHFPLCHVGEDCEGEVVIFTGMVLDENKKLREMTHEDIA


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