Metagenome / Metatranscriptome Family F087183

Overview

Basic Information

• Family ID: F087183
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 110
• Average Sequence Length: 64 residues
• Representative Sequence: MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSHHESYQAQVEELRLDNASTDDKDILL
• Number of Associated Samples: 82
• Number of Associated Scaffolds: 110

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 98.18 %
• % of genes from short scaffolds (< 2000 bps): 85.45 %
• Associated GOLD sequencing projects: 77
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (56.364 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (19.091 % of family members)
• Environment Ontology (ENVO): Unclassified (57.273 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (50.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 57.14%
  β-sheet: 0.00%
  Coil/Unstructured: 42.86%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13392	HNH_3	20.91
PF13884	Peptidase_S74	19.09
PF07460	NUMOD3	1.82
PF00535	Glycos_transf_2	0.91

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	43.64 %
Unclassified	root	N/A	56.36 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	18.18 %
Unclassified	root	N/A	56.36 %
Viruses	superkingdom	All Organisms → Viruses	25.45 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	18.18 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	19.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Unclassified	root	N/A	56.36 %

Level 4

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.91 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	12.73 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	19.09 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Unclassified	root	N/A	56.36 %

Level 5

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	12.73 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Unclassified	root	N/A	56.36 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	19.09 %

Level 6

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	12.73 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	19.09 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	0.91 %
Unclassified	root	N/A	56.36 %

Level 7

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	0.91 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	8.18 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.91 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	19.09 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	1.82 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.91 %
Piscirickettsiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Unclassified	root	N/A	56.36 %

Level 8

Name	Rank	Taxonomy	Distribution
Aphanizomenonaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae	0.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	0.91 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	8.18 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.91 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1.82 %
Methylophaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Unclassified	root	N/A	56.36 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	19.09 %

Level 9

Name	Rank	Taxonomy	Distribution
Aphanizomenon	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon	0.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	8.18 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Roseivirgaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Roseivirgaceae	0.91 %
Unclassified	root	N/A	56.36 %
unclassified Bacteroidales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales	0.91 %
unclassified Methylophaga	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga	0.91 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	19.09 %
Weeksellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1.82 %

Level 10

Name	Rank	Taxonomy	Distribution
Aphanizomenon flos-aquae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae	0.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	0.91 %
Chryseobacterium group	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group	1.82 %
Methylophaga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp.	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Roseivirga	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Roseivirgaceae → Roseivirga	0.91 %
Unclassified	root	N/A	56.36 %
unclassified Chitinophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae	2.73 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	19.09 %

Level 11

Name	Rank	Taxonomy	Distribution
Aphanizomenon flos-aquae WA102	isolate	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	0.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	0.91 %
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	2.73 %
Chryseobacterium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1.82 %
Methylophaga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp.	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Unclassified	root	N/A	56.36 %
unclassified Roseivirga	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Roseivirgaceae → Roseivirga → unclassified Roseivirga	0.91 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	19.09 %

Level 12

Name	Rank	Taxonomy	Distribution
Aphanizomenon flos-aquae WA102	isolate	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	0.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium	0.91 %
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	2.73 %
Chryseobacterium gleum	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1.82 %
Methylophaga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Methylophaga → unclassified Methylophaga → Methylophaga sp.	0.91 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.36 %
Roseivirga sp. 4D4	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Roseivirgaceae → Roseivirga → unclassified Roseivirga → Roseivirga sp. 4D4	0.91 %
Unclassified	root	N/A	56.36 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	19.09 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001213|JGIcombinedJ13530_107345103	Not Available	518
3300001282|B570J14230_10231425	Not Available	502
3300002408|B570J29032_108874520	Not Available	529
3300002408|B570J29032_109833956	All Organisms → Viruses → Predicted Viral	1542
3300002835|B570J40625_100300292	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1629
3300003277|JGI25908J49247_10076500	Not Available	831
3300004768|Ga0007762_1594545	Not Available	783
3300005583|Ga0049085_10034468	All Organisms → cellular organisms → Bacteria	1868
3300005583|Ga0049085_10139984	Not Available	820
3300006484|Ga0070744_10137037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	703

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	95.45%
Terrestrial	Environmental → Terrestrial	4.55%

Category

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	4.55%
Freshwater	Environmental → Aquatic → Freshwater	83.64%
Marine	Environmental → Aquatic → Marine	11.82%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	0.91%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.45%
Lake	Environmental → Aquatic → Freshwater → Lake	48.18%
Lentic	Environmental → Aquatic → Freshwater → Lentic	26.36%
Lotic	Environmental → Aquatic → Freshwater → Lotic	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.55%
Unclassified	Environmental → Aquatic → Marine → Unclassified	4.55%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.91%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.91%

Subtype

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.73%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	4.55%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	10.91%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	37.27%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	23.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	4.55%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.91%

Habitat

Habitat	Taxonomy	Distribution
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.91%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.91%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.91%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	3.64%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	4.55%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	2.73%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	17.27%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.73%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	2.73%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.73%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	19.09%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	15.45%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.73%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	4.55%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.91%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	10.91%
Surface Water	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Surface Water	0.91%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.91%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental
3300002408	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental
3300004768	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (Metagenome Metatranscriptome)	Environmental
3300005583	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300006805	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA	Environmental
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1073451031	3300001213	Wetland	MKNKQLLQLVSNLNAVIGSQETKTQKKLVKIYERVKKHHEDYPAEVEILRLDNAQTDDK
B570J14230_102314252	3300001282	Freshwater	MKYKQLLQLVSSINAVIGNSETKTQKKLVKIYERVKKHHEDYQAEVEILRLDNAQTDDKDCLLLDEKGNY
B570J29032_1088745202	3300002408	Freshwater	MKYQQLQTLVASINAVIGSQETKTQKKLFKIYEKVKTHHEDYQAKVEELRLDNAQVDGNDCLILDEKGSYK
B570J29032_1098339565	3300002408	Freshwater	MKYQQLNTLVASINAVIGSQETKTQKKLFKIYEKVKTHHEDYQAKVEELRLDNAQVDGNDCLILDEKGSYK
B570J40625_1003002921	3300002835	Freshwater	MKNKQLLQLVSNLNAVIGNSETKTQKKLVKIYERVKKHHDDYQAEVEILRLDNAQTD
JGI25908J49247_100765003	3300003277	Freshwater Lake	MNYNKLNSLIANINAVIGNQETKIQKKLFRLYEKVKSYHESYQAQVEELRLDNASTDD
Ga0007762_15945451	3300004768	Freshwater Lake	MKFNQINTLVANLNVVIGSQESKTQKKLFRIFEKIKPHSEAFQSEIEGLRLDNAQVDDKDCLLLDDKGA
Ga0049085_100344683	3300005583	Freshwater Lentic	MKFNQINTLVANLNAVIGSQESKTQKKLFRIFEKIKPHSETFQSEIEGLRLDNAQVDDKDCLLLDDKGAFKFT
Ga0049085_101399841	3300005583	Freshwater Lentic	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKENIKK
Ga0070744_101370372	3300006484	Estuarine	MKYNKLNSLVANINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEK
Ga0070744_101958211	3300006484	Estuarine	MQYNKLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKD
Ga0075464_109344391	3300006805	Aqueous	MKKYQQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDD
Ga0102817_10799644	3300007555	Estuarine	MKYSQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSYHESYQAQVEELRLDNASTDSN
Ga0102859_11909563	3300007708	Estuarine	MQFKQLNTLVASINAVIGNAESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDSNDILLLDEKNGY
Ga0114340_11658033	3300008107	Freshwater, Plankton	MKYKKLLQLVSNINVVIGNQETKVQKKLYKIYEKIKPHHDDYNTEVEILRLDN
Ga0102829_13160372	3300009026	Estuarine	MKYNKLNSLVANINAVIGNSETKIQKKLFKIYEKVKSYHESYQAQVEELRLD
Ga0105099_104538443	3300009082	Freshwater Sediment	MKYKHLLQLVSSINVVIGNQDTKTQKKLFKIYEKVKAYHEDYQAEVEILRLD
Ga0105103_102573431	3300009085	Freshwater Sediment	MKNKDLLQLVANLNAVIGSQETKTQKKLVQIYNKVKPYHEAYNAEVESLRLDAAQTDDKDCLLLDDKGN
Ga0105103_106043153	3300009085	Freshwater Sediment	VSNLNAVIGSQETKTQKKLVKIYEKVKQHHEDYQAEVEILRLDNA
Ga0114977_100812731	3300009158	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGG
Ga0114977_104503172	3300009158	Freshwater Lake	MNYNKLKSLIANINAVIGNQETKIQKKLFRLYEKVKSYHESYQAQVEELRLDNASTDD
Ga0114966_104625753	3300009161	Freshwater Lake	MKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEK
Ga0114975_100432133	3300009164	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNAST
Ga0114975_100817853	3300009164	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEK
Ga0114975_103018641	3300009164	Freshwater Lake	MQFKQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKF
Ga0105102_100885861	3300009165	Freshwater Sediment	MKYKQLLQLVSSINVVIGNQDTKTQKKLFKIYEKVKAYHEDYQAEVEILRLDNAQTDDKDCLLLDDK
Ga0105102_102549743	3300009165	Freshwater Sediment	VSNLNAVIGNQETKTAKKLVKIYEKVKQHHEDYQAEVEILRLDNAQTDDKDCLLLDDKGN
Ga0114979_101725381	3300009180	Freshwater Lake	MNYNKLNSLIANINAVIGNSETKIQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYK
Ga0114974_103972313	3300009183	Freshwater Lake	MKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKNGYKFTKESIK
Ga0114974_104257913	3300009183	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILL
Ga0114982_10191193	3300009419	Deep Subsurface	MKNKQLLQLVSSINVVIGNQDTKTQKKLFKIYEKIKKHHEDYQAEVEILRLD
Ga0114960_105468061	3300010158	Freshwater Lake	MNYNNLSTLVASINAVIGNQETKIQKKLFKIYEKLKTHHEDYQAAVEELRLDNASADDKDIL
Ga0133913_104491813	3300010885	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSHHESYQAQVEELRLDNASTDDKDILL
Ga0133913_117809751	3300010885	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEK
Ga0157138_10065161	3300012352	Freshwater	MKNKQLLQLVSSINVVIGNQDTKTQKKLFKIYEKIKKHHEDYQAEVEILRLDNAKTDDKD
Ga0157138_10092113	3300012352	Freshwater	MKYKQLLQLVANLNAVIGSQETKTAKKLVKIYDKVKTHHESYQAEVEILRLDAAQ
Ga0157203_10405141	3300012663	Freshwater	MQYNKLNVLVASINAVIGNSESKTQKKLVKIYEKVKSYHESYQAQVEELRLDNASTDSNDILLLDEK
Ga0134315_10724311	3300014962	Surface Water	MNYNQLNQLVANLNAVIGSQESRTQKKLFRIYEKVKSHHEAYQAEVEGLRLDNAQVDSNDCLILDDKNSYK
Ga0181364_10774511	3300017701	Freshwater Lake	MKYTQLNTLVASINAVIGSQETKVQKKLFKIYEKVNSYHESYPAKVEELRLDNASTDDKD
Ga0181344_11898412	3300017754	Freshwater Lake	MKYKQLLQLVSSINVVIGNQDTKTQKKLFKIYEKIKKHHEDYQAEVEILRLDNAQT
Ga0181344_12169513	3300017754	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNA
Ga0181356_12411202	3300017761	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYERVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKF
Ga0181343_10519283	3300017766	Freshwater Lake	METTKMKYKDLNVLVSSINAVIGSQETKVQKKLFKLYEKVKPFHEDYNKQRDELRLDNAATDDKGVLIMVFFL
Ga0181357_11465103	3300017777	Freshwater Lake	MKYNKLNSLVANINAVIGNSESKTQKKLVKIYEKVKSYHESYQAQVEDLRFDNASTDSNDILLLDEKNGYKFTKENIKKLI
Ga0181349_12398152	3300017778	Freshwater Lake	MNYNKLNSLIANINAVIGNQETKIQKKLFRLYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKENIKK
Ga0181346_12096161	3300017780	Freshwater Lake	MKYNQLNTLVASINAVIGTQETKVQKKLFKIYEKVKSHHESYQAQVEELRLD
Ga0181346_13073652	3300017780	Freshwater Lake	MQYNKLNVLVASINAVIGNSESKTQKKLVKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEK
Ga0181348_11294303	3300017784	Freshwater Lake	MKYNKLNSLVANINAVIGNSESKTQKKLVKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEK
Ga0181348_11427593	3300017784	Freshwater Lake	MNYNKLNSLIANINAVIGNQETKIQKKLFRLYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFT
Ga0181563_101833454	3300018420	Salt Marsh	MKNYNQLNQLVVNLNAVIGGSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNAS
Ga0211734_107944983	3300020159	Freshwater	MKYKQLLQLVNNLNAVIGSQETKTAKKLFQIYNKVKKHHEEYQAEVEILRLDNAQTDDKDCLLLDEKGN
Ga0211726_101099461	3300020161	Freshwater	MKKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDIL
Ga0211726_109382614	3300020161	Freshwater	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSHHESYQAQVEELRLDN
Ga0194037_10160231	3300020164	Anoxic Zone Freshwater	MNYNNLSTLVASINAVIGNQETKVQKKLFKIYEKLKTHHEDYQAAVEELRLDNASADDKDILLLDEKGGYKFT
Ga0208481_10498842	3300020520	Freshwater	MKNKQLLQLVSNLNAVIGNSETKTQKKLVKIYEKVKQHHEDYQAEVEILRLDNAQTDEKD
Ga0222714_100529501	3300021961	Estuarine Water	MKYQQLQTLVASINAVIGSQETKTQKKLFRLYEKVKTHHEDYQAKVEELRLDNAQVDDKDCLVLSEKGEYRFTKEA
Ga0222713_106184912	3300021962	Estuarine Water	MKYKQLLQLVSSINVVIGNQDTKTQKKLFKIYEKVKAYHEDYQAEVEILRLDNAQTDDKDCLLLDEKGNY
Ga0181354_11905641	3300022190	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYK
Ga0181351_11511991	3300022407	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKEN
Ga0244775_112579732	3300024346	Estuarine	MQFKQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSYHESYQAQVEELRLDNASTDSNDILLLDEKG
Ga0244776_101148844	3300024348	Estuarine	MKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLD
Ga0208923_10132746	3300027320	Estuarine	MKYQQLQTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDSND
Ga0208975_10134921	3300027659	Freshwater Lentic	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLL
Ga0209443_12965941	3300027707	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNAS
Ga0209297_10260861	3300027733	Freshwater Lake	MKYNKLNSLVANINAVIGNSESKTQKKLVKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGY
Ga0209296_10170001	3300027759	Freshwater Lake	MKYNKLNSLVANINAVIGNSESKTQKKLVKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYK
Ga0209296_10450841	3300027759	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKTQKKLFKIYEKVKTHHEDYQAKVEELRLDNASTK
Ga0209246_101279741	3300027785	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKENIKKL
Ga0209246_103245802	3300027785	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYERVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKENIKKL
Ga0209353_101536553	3300027798	Freshwater Lake	MNYNKLNSLIANINAVIGNQETKIQKKLFRLYEKVKSYHESYQAQVEELRLDNASTDDKDILL
Ga0209353_101821323	3300027798	Freshwater Lake	MKYNKLNSLVANINAVIGNSESKTQKKLVKIYEKVKSYHESYQAQIEELRLD
Ga0209354_104263721	3300027808	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSHHESYQAQVEELRLDNASTDDKDIL
Ga0209191_10792961	3300027969	Freshwater Lake	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGY
Ga0247723_10180746	3300028025	Deep Subsurface Sediment	MKYNQLQQLVANLNAVIGSQESRTQKKLFRLYEKVKTHHEDYQAKVEELRLDNAAVGEKDILLLDEKGSYKFT
Ga0247723_10332583	3300028025	Deep Subsurface Sediment	MKNKDLLQLVANLNSVIGNSETKTQKKLVKIYERVKKHHEDYQAEVEILRLDNAQTDDKD
Ga0247723_10579711	3300028025	Deep Subsurface Sediment	MKYKQLLQLVSSINVIIGNQDTKTQKKLFKIYEKIKKHHEDYQAEVEILRLDNAQTD
Ga0247723_10744431	3300028025	Deep Subsurface Sediment	MKYQQLQTLVASINAVIGNSETKTQKKLFKIYEKVKTHHEDYQAKVEELRLDNAAVGEKDILLLDEKGSYKFT
Ga0304730_10280843	3300028394	Freshwater Lake	MKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKESI
Ga0315293_108510473	3300031746	Sediment	MKYQQLQNLVASINAVIGNAESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDD
Ga0315285_105207681	3300031885	Sediment	MKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNA
Ga0315904_112074501	3300031951	Freshwater	MKYQQLNTLVASINAVIGSQETKTAKKLFKIFEKVKTYHEDYQAKVEELRLDNAAVGE
Ga0315294_102211541	3300031952	Sediment	MNYNKLNSLIANINAVIGNSETKIQKKLFRLYEKVKSHHESYQAQVEELRLDN
Ga0315294_102625744	3300031952	Sediment	MNYNQLNQLVANLNAVIGSQESRTQKKLFRIYEKVKSNHEAYQAEVEGLRLDNAQVDSNDCL
Ga0315294_111373962	3300031952	Sediment	MQYNKLNTLVASINAVIGNAESKTQKKLVKIYEKVKSYHESYQAQVEELRLDNA
Ga0315294_113747652	3300031952	Sediment	MKYQQLQNLVASINAVIGNAESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKF
Ga0315274_116698911	3300031999	Sediment	MKYQQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDSNDIL
Ga0315274_120349112	3300031999	Sediment	MQYNKLNVLVASINAVIGNSESKTQKKLVKIYDKVKSHHESYQAQIEELRLDNASTDDKDILLLDEKGGYKFTKESIKKLTAQVKE
Ga0315289_111223883	3300032046	Sediment	MKYQQLQNLVASINAVIGNAESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKESIKKL
Ga0315284_116559562	3300032053	Sediment	MNYNKLNSLIANINAVIGNSETKIQKKLFRLYEKVKSHHESYQAQVEELRLDNAST
Ga0315270_110106561	3300032275	Sediment	MKYQQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKE
Ga0334722_103088891	3300033233	Sediment	MKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYK
Ga0334982_0308926_582_740	3300033981	Freshwater	MKNKQLLQLVSNLNAVIGSQETKTQKKLVKIYEKVKQHHEDYQAEVEILRLDN
Ga0334992_0093889_1_228	3300033992	Freshwater	MKYQQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKES
Ga0334996_0005801_8164_8376	3300033994	Freshwater	MKNKQLLQLVSNLNAVIGSQETKTQKKLVKIYEKVKQHHEDYQAEVEILRLDNAQTDDKDCLLLDDKGNYK
Ga0335003_0356984_2_256	3300033995	Freshwater	MKYQQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKENIKKLTAQVK
Ga0334979_0101091_1586_1795	3300033996	Freshwater	MKNKDLLQLVANLNAVIGSQETKTQKKLVQIYNKVKPHHEAYQAEVEILRLDNASTDEKDCLLLTDKGEY
Ga0334979_0524475_445_636	3300033996	Freshwater	MNYNQLNQLVANLNAVIGSQENRTQKKLFRIYEKLKSHHEAYQADVEGLRLDNAQVDSNDCLIL
Ga0334986_0148618_1_183	3300034012	Freshwater	MKYKQLLQLVNNLNSVIGSQETKTQKKLFQIYNKVKKHHEDYQAEVEILRLDNAQTDDKD
Ga0335023_0078386_1716_1916	3300034050	Freshwater	MNYNKLNSLIANINAVIGNQETKIQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDSNDILLLDEK
Ga0334987_0000965_2_178	3300034061	Freshwater	MKYKQLLQLVSSINVVIGNSETKTQKKLVQIYNKVKPHHEAYQAEVEILRLDNASTDEK
Ga0334987_0213181_2_178	3300034061	Freshwater	MKYKQLLQLVSSINAVIGNSETKTQKKLVQIYNKVKPHHEAYQAEVEILRLDNASTDEK
Ga0334987_0320836_837_1016	3300034061	Freshwater	MKNKQMLQLVSNLNAVIGNSETKTQKKLVKIYEKVKQHHEYYQAEVEILRLDNAQTDDKD
Ga0335028_0211372_2_145	3300034071	Freshwater	MKNKQLLQLVSNLNAVIGNSETKTQKKLVKIYERVKKHHEDYQAEVEI
Ga0335010_0034777_3585_3776	3300034092	Freshwater	MKNKQLLQLVSNLNAVIGSQETKTQKKLVKIYEKVKQHHEDYQAEVEILRLDNAQTDDKDCLLL
Ga0335031_0213329_2_229	3300034104	Freshwater	MKYQQLNTLVASINAVIGSQETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKES
Ga0335035_0162327_1213_1401	3300034105	Freshwater	MKYTQLNTLVANLNAVIGSQESRTQKKLFRIYEKVKSHHEAYQADVEGLRLDNAQVDGNDCLI
Ga0335051_0577437_322_516	3300034109	Freshwater	MKNKQLLQLVSNLNAVIGSQETKTQKKLVKIYEKVKQHHEDYQAEVEILRLDNAQTDDKDCLLLD
Ga0335055_0101920_1137_1310	3300034110	Freshwater	MKYQQLNTLVASINAVIGNSETKVQKKLFKIYEKVKSYHESYQAQVEELRLDNASTDD
Ga0335033_0366413_473_718	3300034117	Freshwater	MKYQQLNTLVASINAVIGSQETKVQKKLFRLYEKVKSHHESYQAQVEELRLDNASTDDKDILLLDEKGGYKFTKESIKKLTA
Ga0335013_0807487_348_524	3300034284	Freshwater	MKNKDLLQLVANLNAVIGSQETKTQKKLVQIYNKVKPHHEAYQAEVEILRLDNASTDEK